Array 1 67850-66477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYB010000030.1 Streptomyces sp. RK23 RK23_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67849 29 100.0 32 ............................. GCCGCATACAGCTCCGGCAGCATGCTGATGCC 67788 29 100.0 32 ............................. GGCAACCTCACGAGTTCGGGCTCGTGTTCGCC 67727 29 100.0 32 ............................. AGCACCGCGACCACGCACAGCGCGGTGATCGG 67666 29 96.6 33 ............................A CGCCGAGTTCGACCGGACCGTGGTCCTGGGCGA 67604 29 100.0 32 ............................. AGGATCCGATCGCCGCGCCGGTAGCTGTCCTG 67543 29 100.0 32 ............................. CTCGAGCAGTTCGACAAGCTCGTCAACATCCA 67482 29 100.0 33 ............................. CACGCAGCGCGCCCGGTCCGTGGATGGCCCGCT 67420 29 100.0 32 ............................. AGGTCAGCCCTGGGGGCGGATGAGTTGACGTA 67359 29 100.0 32 ............................. TTCGCGAAGTTCTCGGCGGTCACCGAGGCGTC 67298 29 100.0 32 ............................. GTCTGCGCGAGGTGGTCGGACGGCTTGAGCGG 67237 29 100.0 32 ............................. GTTCGGTGGTGACGTGCGGCTTCATGAGGTCA 67176 29 100.0 32 ............................. AAACTCACTGCACTGTGTAGTTAGTTCAGTGA 67115 29 100.0 32 ............................. AACGGATCAGACACGGCGGCCGCTGTCATCAC 67054 29 96.6 32 ............................T GCTATACCAACCAAGGGGCCGTGGTCTAGGAT 66993 29 96.6 32 ............................G GTACCCCGCACGCGCTCCATGAGCGCGTGCCG 66932 29 100.0 32 ............................. CCGGACCGTACGCCCGCCCTTGGGTGGACTGA 66871 29 100.0 32 ............................. GGCCGGGCAGTCTTCACCGCGGCCAACGGCTG 66810 29 100.0 32 ............................. CGGTCGACGATGGTTCGCAGGATGCTGCGGTG 66749 29 96.6 32 .........................C... AGGCCCTGCGCTCCGACGGCCGGGTACCAGGA 66688 29 100.0 32 ............................. ATGACGCTCGGGTTCACTGCGATCGAGCTGAA 66627 29 100.0 32 ............................. GGCAAGCCCTACCAGTGGGGCGGCAACGGCAA 66566 29 96.6 32 ..............T.............. AGCGCCTTCCACACGCCCGGAAAGTCGATCGT 66505 29 93.1 0 ...............A.......A..... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGCCGGACCGGCCGCGGTTGAAGGTGGTGACATCCCACCCTCTCGCCAACGCGGTCTCCACAATCGCCTTGCCCAGGAACCACGTTCCGCCCATGACGAGAATCCTCATGCCCCTGATCCTGCCCTGCCCGGGGCGCGGACGACAGGGCGGGCGGCGCCGCCGGCCGAGCAGTGAGTGCAGGGGCTCGCATGTCAGAGGCGACTGCAATGCTGGGAGGGTGATCGGTGGCCCCCTGGAAAACCTGCTCGACGTCGACAGACGGAACCCTGTGCACGCCAGCTGGGCTGCCGACACCAGCAGGTGAGCTCAAGCTGACGCCCGAGCGGCTCCACGCGGGGCTCATCCAACACTGTGCGAGGGAGGCCCTTGTTCAGCGGCGGACGATAGGTCTGCTTTGAAGTGCCCTATGGATGGACACCCTTGCATGTCTCATTTGCCGGATTCTGCAAAGCTTGCTGAAAACGCGCTCCTACGACCGTAAACTCGCAGGTCAATCAGT # Right flank : CAACTACGAGGGGCACGGCTCCCGCTTTCCAATGGGCAGCCGGCGATGCCCGGCAGGTCAGGGTGCCGCGGTGTCGTCCGGGCAGGCGGTGAGAAGTGCCCGGGCGCGGTTTCGGAGGGCTTTGTCCTGGCGAATGAGGCGATCTTCGACTCCCGAGCGGACCACCCGGGCGTCGCCGTCGGCGAGAGCGGCAAGTCGGCGCGCGTGGTCGTCGGTCAATGCGTCGGGGCCGAGTGCTTCCAGGGCGTCGCAGGCGCCTGCCGGATCGGCATCCGATTCGGCCGACCGCAAGGCGGCCTCGGCGAGCGTGGTGCGGTCCAGCGAGGCAGGTTCGGCCACGGCCGTGAGGGCCAGCACCGCGGCCGGTGCCTGTACCGGATCGTTCAGGGCGGCTTCCAGGTGGGCGGCGAGCGGCCGTCCCGCGGGGCCGAGGAGGGCCGTCGTACGGGCGGCGCGCACCACCGACCACTGGGACCAGGGGTTCTGTTTGGCGCGTGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91287-90480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYB010000030.1 Streptomyces sp. RK23 RK23_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 91286 29 100.0 32 ............................. GCCGGCGTCAGGAAGCGCGCCGTCCCGCTGCT 91225 29 100.0 32 ............................. GAGCAGCGCGTAAGTGCGGGCGCTCTCGTTCT 91164 29 100.0 32 ............................. TCGCTGACCTGCGGTTCGTCGTCGAAAAGCAA 91103 29 100.0 32 ............................. GCCATCACCGTCGGGAAGATCGACGCCGGGGC 91042 29 100.0 32 ............................. GTCTACAACCGGCATGTGTGGCAGCTTGCAGA 90981 29 100.0 32 ............................. GAAAGGGTCGGCGGCTGCAGGTAGGCGTTGGC 90920 29 100.0 32 ............................. GCGCTCGGGATCTGGGCGGGCAGCCGGGATTC 90859 29 100.0 33 ............................. CACGTGAGCCGTGCCCCGTGCTGCCGGGCGTTC 90797 29 96.6 32 ...............A............. GCGCACCTGGTCGAGACCGGCGCCCAATACGC 90736 29 96.6 32 ...............A............. GCGACGCGTGTCCGGTGCTGGTTGGAAGGTGA 90675 29 93.1 32 ........................T.G.. GACATCCTGCGTCAGGCCATCACGGCCCTCAT 90614 29 93.1 34 ........T..........A......... GCGTACAGGCGCCTGGCCGGCTCACCCTCGCCGA 90551 28 75.9 14 ........T.....G..A...G-.CA... GGCGGCCCTTACAC C [90541] Deletion [90510] 90508 29 79.3 0 ...T......TC........A.A.C.... | ========== ====== ====== ====== ============================= ================================== ================== 14 29 95.3 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCCGCTTTGCAGCCGTCGACGTGGACGCCCTGCGGGCCATCGCCACGCTGGCCGAACACCATGGCGGACGACTCGCGGTCACCCTGCCGCCCGGCCTCACCCACACCGCATCCCACCGGGCACCGGGACCGCAGAGGTCTACCTCGTCTTCCAGATCACTTGCGCTGTCATCGTCACCGTCGGCAGTCCGGTCCGCGTCGACAGCGTGCCCAACCCCCACGTTCCGGGGCCTGCAGTGACCCCGAGCCGGGGGTGGGCCCAGCACGGTGAGACCGTTCGCGTGCTGCGGGACCTGGCGCGCCCATCACCAGGGTCGGACAGGGCGCAGGGAGGACCGCGTGTCGCCACAGCCGCAGCCTCCGCTGAACGGCCATCGTTCCTGCCACCCAGATGCTCGTACACGCCCTATGGAGACCCACTGCCAGGTGTCCGATTTGCCGGGTTCTGCAAAGCTTGCTGAAAACCCGCCTGCGCGCCCATAGAATCCCAGGTCAGACAGT # Right flank : ACCCCGGTCCTCGCAGTCGGCGATGGGACCCTCGGATTCTGGTAGGCCATGGCCGAGGGTTTCTCTGCCACTCGGCATAAGAGGCGCTGGGTTCACAAGATTGCCAATGTCGCGAACGTCCTGCCAAAGTCCGCCCAGCTCGCCCCCATCGCATAACGACGGGGGCGAGTGCTGTCAGGGCCAGGGATCGGGCCAACGGCGTCGGGTGATTCTGTCCGGCCCCTGCTCTTTGCTGGGCTTAGCTGAGGGTTTGGAAGTCGAGCCAGCCGCCGGTGCCGACGGATGTGGGGGTGCCGTGTCCTGTGGTGGTGATGGCGGGGTAGAAGTAGAGGCCCTTTCCGGTGTCTGGGCTGGTGGCCCAGAGGTCTGGTTTGTTGTCGTTGTCGGCGTCGCCGCCTGAGGTGATCAGCGGTCGGCTTGTCGGGGTCCAGCCGTGTCCGATTTCGGTGCGGGTGGCGCCGACTCCCAGGCCTTCTCCGGCGGGGCCGGTGCCGGGGTAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 108523-108003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYB010000030.1 Streptomyces sp. RK23 RK23_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 108522 29 100.0 32 ............................. GCGGTGAGGCCCCGGCGTCGGCACAGACACCG 108461 29 100.0 34 ............................. CCGGACGCGAAGGCGTCCAGCCACTTCGGCACCG 108398 29 100.0 32 ............................. GAGCAGTGGCAGCGCCGGGCCGTGCAAGTCCT 108337 29 100.0 32 ............................. TTCGCGCTCGCCGCGGCCGCCGGGGTGGGCAC 108276 29 100.0 32 ............................. CGAGCCCCCGCCGGGATCAAGACGGCGGGGGC 108215 29 100.0 32 ............................. TACCGGCCTGTTCGTGGGCACGGCGCCGCTCC G [108194] 108153 29 100.0 32 ............................. GGAGAGCGCGTCTTCTTCGGGTGGAGCGACCG 108092 29 100.0 32 ............................. TCCCGCGTGCACCGGGGGACGCTCGTCCCGGT 108031 29 93.1 0 .......................A.C... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 99.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGGCAAGCGAACGCCGGGGTGGCCTTGCCGATGTCGTGCACGCCCGCGAGCCACACGGCAAGTACACGCGCGTCCGACTCTCCTCGAGGCATCGCCTCGGCGATCAGCCGCCGCACTGCTACGGGCAGCCACCGGTCCCATAACAGGCCCGCCACTGCGGCACTGTCCTCCATGTGCCGCCACAGCGGGAGCCACCCATCGGTCTTACGGTCATGCTTGGCCCACACGGCCCTGGCCGGCTCCCCAAGCCGACGCAACAGGCCGGAACGGGTGTTCCCCCCATCACTCATGAGTGATTCATACAGGGAAAACCAGGCTTGCCCCATCAAAACCAGCAAAGAGGAGAGTCGGCCGAGAGGCAGCACTTCCTACTCATAGGATGATCGGCTAACCATGGACGTGTCTACGGAACCTACCCTTCGCTTCATGTCCTATTTGTCGGAATCTCTAAAGCTTGCTGAAAACACGCCTCTACGGCCATGAACTCGCAGGTCAAACAG # Right flank : AGCTCCCGCATCGACCCGGTCGCCCGGCGGAGGCCCTCCGCGGAGGGCTACGCGCCGTCCACCCGCGCCGACGAAGCAGTCGACGCGATCTCGGACGAAGGAAGGGGCACCGCAAAGTCGTACAGCCGCCCCCGGATGTGGTGAACGAGCGGGGAGTCCGGGCCGTGGATGTCAGTGGCGACGGTCAGTAGGGCGGCGCCAAGGCGCTGTCGGTCCGGCTCCGGCGGAACGGATCGCCACAGGCTGTAGGCGCGGCGGGTGGCCGCTTCGACGTCGGGGTGGCCCGGGCCCTGGATGGTGACGCGCAGCTGCGCGGCGTGCAAGTACCAGGACAGGCCCGACGCGTGGTCGCTGGCGAGGGCAGCGAGGTAGCCGCGTACTTCGCGGACCTGGATCGTGTGCAGATGCAGTTCGCCGTACTCGGCGGTGGCGTCCTGGTCGATCCGGGCGGCGAGGGCGGTGGCGTCTGGGAGGTGGCCGGCCCCGGCGATTTCGGCGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 118271-119188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPYB010000030.1 Streptomyces sp. RK23 RK23_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118271 29 100.0 32 ............................. CTCGAACGAGGGAGCAGGCCATGAAGTACTTC 118332 29 96.6 32 ............................A CAACGGGGCCTGGCAGCGCCCGTAGCCGTGCC 118393 29 100.0 32 ............................. TCGCGGCGGTCGCGCACGCCGAGGAAACCGCC 118454 29 100.0 32 ............................. AACCCCCGGCAGCTCCGCTCGAAGACGTGCGG 118515 29 100.0 18 ............................. GCCCACCGTCCGGACCCT Deletion [118562] 118562 29 100.0 32 ............................. GTCGCCGAGATCATCGGCGGTGTCTTCAACGC 118623 29 100.0 32 ............................. GCGACCGAGGGCTGGCGCCGCGGGGACCGCTG 118684 29 100.0 32 ............................. TACAAGGAGTGGTCCGACGATCTGTCCGGCGA 118745 29 100.0 32 ............................. TGGGCCACGGTCAGCGCGAAGCCGTCGCCGCT 118806 29 96.6 32 T............................ ACCGCTTGCCCGGTCTGGTGCCCAGCGCATGG 118867 29 100.0 32 ............................. GCGGTACACCTCCGCACCGTCCTCGCCCACCC 118928 29 96.6 32 .......................A..... ACCGGTCAGGGCGAGGATCGGGTCCCACCAGT 118989 29 93.1 33 ...........G...C............. TACCTGGCCCCAGACGGGCAGGTCGCCGCGAAG 119051 29 89.7 32 .............AT.........A.... TGCTTCAGCCACCACCTGTACGCCGAGCCGTA 119112 29 89.7 16 ..........T...T.........A.... GCTCTCCTGATCGAGG Deletion [119157] 119157 29 86.2 0 ...GC.....T......T........... | T,GT [119167,119171] ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.8 30 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTCGCCTCCGGCACCAACTACGACGGCCCCGAGGACTACGGGGACGAGCTCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCCGGCCTGCGCGGCTTCCTCACCCGCTGGCTGCTGGAGATCTCCGCCGGGGTCTTTGTCGGCAACCCCTCCGCCCGCATCCGCGACGCACTCTGGGAAGAAGTCCAGCAGTACGCGGGCCAGGGCCGCGCCCTGCTGGCTCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACGCACGACCACGCCTGGCACCCGACCGACCACGAAGGCATCACCCTGATCCACCGCCCCGACCCCAACGCCCCCGGCCCAGCTCCCCAGAACGGACCACCATCCGGCTGGAGCAGAGCAGCCAAACGCCGACGCTTCGGCAGAGGCTGACATCTTGAGTACCTTATAGCCGATTTGTCAGAATCAATGAAGATGCTCGAAAATCGTCTCCGGCGTCAGCAAAAACGCAGGTCATCCAGT # Right flank : CCGGGTGGCCCACGCCTTGGAGTTCCGGCCAAGGGCATAAACGATCACCGGCGCCAACGCGGGGACAACCTCGACGGATAGCACCGTGGAGTTACTTCCTGCTCTGCTCCCTGGACTGCGTCGGCTGCGGGGGCGCGACAGAGGCCCGCTGGTGCTGCACCGTCAGCTTGGGCTGTTCCTGCCGAAGGGCGAGGCGTCCCGTCGTCTCCCGGTCGTGCAGGTCGGGGAACTTCTCGGCGATCGTGCCGCGCAAGGCATTCTCGGTGCGGGCGTGGGCGGCTTGGGCGCGGCAGCTGGCGGCGAGCTTCCGGGATTCCCCGGCCTGGCGGGTCGCGCGGCTGACGTCGTCGCGGTCGCGTTTGTCGATGCTGTGGCCGTGTCGGGCGGCGGTGGAGCGCATCTCGAGGAACCGTTCGACGGCCGTGTCCGCGCGGTCGGGCACCTGCTGACCTGCAGCGCCGAGGGGCTGGGCGATCTGGCTGTCCCGGATGGTCTCCCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //