Array 1 11753-10859 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFMPQ010000055.1 Cognatishimia sp. F0-27 scaffold_55_length=25727, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     11752	    36	  88.9	    30	C...AC........G.....................	CGACTTCAGGTAAACCACATCGCCACGCTT	T [11743]
     11685	    36	 100.0	    30	....................................	GGAGAAATACCACGAGAGCCGTCGCGCCAT	
     11619	    36	 100.0	    30	....................................	ACCGCCCGCCGGAATAAAACCGCCAATTTT	
     11553	    36	 100.0	    30	....................................	TACGCGGCTGGATCTGCGGATGTGGCGGAA	
     11487	    36	 100.0	    30	....................................	CTTCCGCTATCACAAAGACCGGAACTTCTC	
     11421	    36	 100.0	    30	....................................	CAAATCCCGCAACGCATCCCGAAAATTCAG	
     11355	    36	 100.0	    30	....................................	CGCGCTTTGCGATCAGCAGGCCGCGCGCGT	
     11289	    36	 100.0	    30	....................................	CGAGCCTGCGAGCGGATTCTTGAATTTTCG	
     11223	    36	 100.0	    29	....................................	CAAATCGCAAAAGACGCGCGCCCGGATTT 	
     11158	    36	 100.0	    30	....................................	TTCGGGCGCGGGTGGTCGCGGCGGGTGAAT	
     11092	    36	 100.0	    30	....................................	GCATCTGCATTGCGCCCAGATCGAAGGCTT	
     11026	    36	 100.0	    30	....................................	GAGCTGGTCGAACAGGTCATTTACACGCAG	
     10960	    36	 100.0	    30	....................................	GAAGCTGTCAGCGTTGCGGTCGTTCCGCTA	
     10894	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.2	    30	GTTGCGGCTGGACCCCGAATTCTGAACAGCTAAACT	                              	       

# Left flank :   TCGGATGCCCACCAGTTCTCAAAGACATCGGCCAAACGCCAATCTTTCGCCAAGCGTCGCAAGAGCACTTCTCGACGTTCTTCAATGTCGGACGGAGTCCAGGTCGAATAGGAGCGCACCTCGTTGGTCAGTGTAAAGGCGCTTGAATCTCCAGGCGCGAAGTATTGGTTATTCTTGACATCAAATTCAAAATTGCGCGCTGCAGATTTCTTTCGGAAATTCAGCAGCACAAGATTTCCCAGGGTGTGTAGCCAAGAACTGTGTTCTTCGGGATCAGAGAACCAGTCCGCCCATTGAGAGTTGTCCGGGAGAGTTCGTGGGCAGACGTGTTCGACCGAAATCGTTGGATAGTCATAAACTGCCGATCCGTCCGTCGAGGCTTGCTCCAACCGGAGAAAGATCGGTTTCACAAACCGCGTTGCAAGATACACGTCACCGTCCAGGGCGTTGAACAGAGCGAATGCTTCCGCTTGGGTGAGTGTAAAACCTGTCGAGCGTTC
# Right flank :  CGATCCCCTTCCAAACTCCTGAAATCACAGGAGTCTTGGGAGGGGACGGGTGAGGCAAACCGAGGAATCTTCATCAAAACAGCGCCAGTTGTTCTGGGTTTTTCCGGGCCGCCCTGCGACCCTGATCCGAGAAATGAACAATATCACGATACTGCCGATCGGTGAAGTTGAGGATCTGAATGTCGCCCTTGTCCGGCAGATGTCGCTCTATACGGTTCACGCGTGTTTGGAACGCCTCCTTGCCGTTGACGAAACGGCAATAGACCGAAAACTGACTGCGCTCAAAACCTTCATCCAGCAGGAAGTTCCGAAAGTCCGTCGCCGCCTTCCGCTGCGGCTTGGTGTCGGTGGGCAAATCAAACATCACGAGAATCCACATGATTCGGTATCCAGACAGGTAGACAGGTGCAGTGGTCATGACCCTAACCCCGAAAGGGTAAGAACATCGGGCGGCGAAGGAAGGGCAAGGTTCAGGCGTCTTGTCTCAAAGCTCTGACCCA

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGCGGCTGGACCCCGAATTCTGAACAGCTAAACT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [8,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.20,-5.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,5.24   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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