Array 1 50-2058 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLQ010000012.1 Acinetobacter ursingii isolate Acinetobacter_ursingii_BgEED03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50 28 100.0 32 ............................ AAGGGTAAACTTAAAGCGAAATATCCAGAGCG 110 28 100.0 32 ............................ TTTTTTGTTTTGTACTGGACGTACAGATGTGA 170 28 100.0 32 ............................ ATTGGCTGTAAAGTGTTGAATAGGATTAGTAT 230 28 100.0 32 ............................ TTTCTACTAAATCTTATATCAGGATTATTAGA 290 28 100.0 32 ............................ ATTTTTACAGTAAAAATTAACTATTTCTTGTA 350 28 100.0 32 ............................ AAACACACATATCAGGATAAAATATTTTATCT 410 28 100.0 32 ............................ AGAATGCCCCGATGTTGGTTATCCAATTAATG 470 28 100.0 32 ............................ TGTGGCGTAGAAATAAGCTTGTAATTATCCAA 530 28 100.0 32 ............................ TGTATTACAAATAGGGGTAGATACCTGCGTGT 590 28 96.4 32 ....................A....... AACAAAAGTAATTGTACCATCAGCCGAAGCTA 650 28 100.0 32 ............................ AAGACAATGCGTTCTTCATTGTCGATCTGCCA 710 28 100.0 32 ............................ TAGATAGATTTGTGCTTCGGGCTTATCAACCT 770 28 100.0 32 ............................ AAGCGAAAAATGCTGACAAAATTGCAATGGAT 830 28 100.0 33 ............................ CTAATTTCATAACATTTGATTAGATTATAAACT 891 28 100.0 32 ............................ GTTTGCATCTTTTGGCATTTCAATATACCAAC 951 28 100.0 32 ............................ AAATTAAAGTATTATCTAATCCTGAACTTATT 1011 28 100.0 32 ............................ GTAAAGCCACGCTTACGCAACATGTTATGCAA 1071 28 100.0 32 ............................ ACAGTTGATAATTCAGCAACTTTATTAACTAA 1131 28 100.0 32 ............................ TGTGCCGATTGCACCAGTGAGCATATAGATCA 1191 28 100.0 32 ............................ AAGGGTAAACTTAAAGCGAAATATCCAGAGCG 1251 28 100.0 32 ............................ TTTTTTGTTTTGTACTGGACGTACAGATGTGA 1311 28 100.0 32 ............................ CATCAAAATCAGTTTCTCGGTAAACTTTTTCT 1371 28 100.0 32 ............................ ATTGCATTGAAAACATATTTTGTTGTCTTTTT 1431 28 100.0 32 ............................ AGTTCCAGAATTACTATTTCCGTTTTTAGCAA 1491 28 100.0 32 ............................ TTTGGCAATGTTAATAAAAGTATTTCATTTCA 1551 28 100.0 32 ............................ ATACAACAGTCCTAATCAACCCCAATATACGG 1611 28 100.0 32 ............................ TGAAGATAATGAAATTGACTGTAGTGATCTAA 1671 28 100.0 32 ............................ ATCCAAAGAAAAAGCGCCTGAGCCTGAAAAAG 1731 28 100.0 32 ............................ TGTCGGGGGACGTTCGCAATAAGTACCTGTAC 1791 28 100.0 32 ............................ ATATTGGTCAACTTTATAAGCTTTAACTTCGA 1851 28 100.0 32 ............................ TAAATTTGAATTCGAATTTATAAGATGGAGTT 1911 28 100.0 32 ............................ GCTAGCCGCATTGACACCAGCAACTGCTGAAA 1971 28 100.0 32 ............................ TTTAACATAAACAGTTCGACCATCCCATTTCA 2031 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.8 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : CATACGCCACTTAGAAAATTGGCTGTAAAGTGTTGAATAGGATTAGTATG # Right flank : ATGCAAACGATGTGTAAAAGGTTAAGCGGATTGGTCCACGAGAGTAGAATATGGAATCTAGCCGATCATAAAAATGAGTTAAAAAGGAATGATATAAACAAAAACGCACTGCTTCTGGCGAAACAGTGCGTTAAGTTAATAAGATTATGCTGGTAAATCGAACCAGATCATTTCACTATCTTCAAGTGCATGAATCGTAGTTTTCTCATCAAACAATAAAGCATCACCTACTTTAACAATTTGATTCTCAATCATAATTTGACCTTTAATCACATGCACATAATTGTGCTTTTGAGTTGCAGCAATCTCAAGTGTTTTACCAGCTTCTAACACAGCCGCTTTCACTTCTGCATTTTGGCGAATATGCATAGCAGCATTATCATTTGGTCCTGCAATCAAGTGCCATTGGTTTGGCTGTTCACTCGGATCAAGTTTGATTTGTTGATACGTTGGTTCAGCATCGCGTACATTTGGATGAATCCAGATTTGAAATAGATGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43425-44833 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLQ010000015.1 Acinetobacter ursingii isolate Acinetobacter_ursingii_BgEED03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43425 28 100.0 32 ............................ GTTAGGCATCAAAGTGTTTAAATACATTCGTT 43485 28 100.0 32 ............................ AAAATAGGTTGGCTATGAATAGATATCCAAAT 43545 28 100.0 32 ............................ ATTCATAGCTTGCATGGTGAAAACATCTTGAA 43605 28 100.0 32 ............................ ATCAGGATCGTCTGAACTTAACGGGGGTAGCC 43665 28 100.0 32 ............................ GTTGGCATCTTTTGGCGTTTCGATATACCAAC 43725 28 100.0 33 ............................ TCAAGATTCGCGTCCTCAAGATTCGCGTCCCAA 43786 28 100.0 32 ............................ CATGATTTTTTAGGCTGCGCATACGGTGAAGA 43846 28 100.0 32 ............................ AACTGTGAAGCAAATGGAAAAATGGCGTTCCG 43906 28 100.0 32 ............................ TTGCCCCTTTGTTGCGTAAAGCTGCGCTTTTC 43966 28 100.0 32 ............................ CTTAACGTAAACAGTGCGACCATCCCATTTCA 44026 28 100.0 32 ............................ TTACGCAACGCTTTTTCACGATAACCTGGCGC 44086 28 100.0 32 ............................ TTACTACCCATACATTGGCTACGGCTATGTTC 44146 28 100.0 32 ............................ AGTAGATGCACAGTAGAACTGTGATGATTCCC 44206 28 100.0 32 ............................ ATTCAAAATCACCAAGCCAACGCGAGCGATCT 44266 28 100.0 32 ............................ ATACGCTTGAAGATGATGACAATGACGTGACC 44326 28 100.0 32 ............................ ATACGCTTGAAGATGATGACAATGACGTGACC 44386 28 100.0 32 ............................ CTGAGTTTATCGATGGTGATAATGCAAATTTT 44446 28 100.0 32 ............................ TAAAACAAAATCATCATTAGTCATATTAAATA 44506 28 100.0 32 ............................ ATTGGGAGTTACACGATTAAAAGGCTTATCAA 44566 28 100.0 32 ............................ TGTTGTTAGATATATAGCCATTTTAATTAACC 44626 28 100.0 32 ............................ TGATGAACTCATTAATTTAATTTCTTGCTCTG 44686 28 100.0 32 ............................ TTAATGGTCGGCTCTCGTGAATCAGGCAAAAT 44746 28 100.0 32 ............................ TGATGAACTCATTAATTTAATTTCTTGCTCTG 44806 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : TGGAGCAACTGAATCTAACTCATTGGTTAGCAAGGCTGCAAGATTATGTACATGTCTTATCTGCTCGTAAAGTTCCTGAGGATAAGATCAACGGCTATGCTACTTATTTTAAAGTTAATCCAAAATTGACGGTTGAGCAGCGTGTTGTTCATCAGGCAAAACGTCGTGGAATCTCAATTGAAGAAGCACAGGAACACTTTAAAGCATTGGATCTGACAGAGACTTTTGAACCTTATATTAATATGAAAAGTCAAACTAATGATATGAACTTCCGTTTGATTATTGGAAAAAGACGTGTTGATGAAGCAAATATTGGAAAATTTGGAAGCTATGGATTAAGTCGTACATCTACAGTACCCGAGTTTTAACCCAATATTTTTTAGACTCTTTAACAGCTTAATAAAATCAATAAGTTATAACTTTGCTTTAAAACTTTGGGTATTACATACTTTTTAGGGTTAAAGCACTGTTATAACTTTATTTTTTGCTTTATTCTTATT # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 140395-139346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLQ010000055.1 Acinetobacter ursingii isolate Acinetobacter_ursingii_BgEED03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 140394 28 100.0 32 ............................ AAGTTATTTAAATCTGCTGCTATTCTCTTTGG 140334 28 100.0 32 ............................ AGTAAAACTTTCTTTGCAAAATTGCTGAGTAA 140274 28 100.0 32 ............................ AAAACCACCACCAACAGCCTCCTCAAATGCAT 140214 28 100.0 32 ............................ GTGGTTATATTGCCTACAACATCATTGTTACC 140154 28 100.0 33 ............................ AGTGCAATTTACATTGGTGTTTTCAAATTTGGT 140093 28 96.4 32 ....T....................... ATGATAAGCAATCAAGTCACGATCATTGGGTT 140033 28 96.4 32 ....T....................... GAAAGCTTGAGTGAATGCAAGAAGCGAAAGGT 139973 28 100.0 32 ............................ TAATAAACCATTTGAAAACAGTGATATACAAA 139913 28 96.4 32 .T.......................... TAACAAACCATTTGAAAACAGTGATATACAAA 139853 28 96.4 32 .T.......................... GTACCCAACAATCAGATCATCCATTGCCTCAT 139793 28 96.4 32 .T.......................... TGGTGAAACCAACATGTTATTTTTTGATTTTT 139733 28 96.4 32 ..........A................. AGTCCATGACATCTCGGCTTTAATTTAAGCCA 139673 28 92.9 32 .........TA................. TGTTGATAAGCCTTAGCCTTCGCTTCTTGATA 139613 28 92.9 32 .T........A................. TTTACTCATACGAATACGTTGAAAAAGGCGGT 139553 28 96.4 32 ....................C....... AACATGCGGAAAGTTTAAACATCCGCCTCCAC 139493 28 96.4 32 ..........A................. AATCAACACAGATAATTTGCTTTTGCTCAACT 139433 28 96.4 32 ....T....................... ATGTAACACCATCAAAACTAGCAACAATACCC 139373 28 78.6 0 .T..............G..A....TTT. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 96.2 32 GCTTCCTATCGCATAGATAGTTTAGAAA # Left flank : CTTAAAAATTCAGCTTTTTCGCTTGGTAAAAGTTTTGCATCCAAAATCTCGGCATCTGCGGCCCATTCTAGAGAAAGTGTTTGTAAAACTAGCGCAGAGCTTTCTGCAAAATAATCTTCGGTTCCCTGACCTAAATGAGCATCGTATTGACGTAATGCAGTCACTCCAAAACGAATAAAATCACGAATTGTTGTTAAGTTTTCTGCGGCTTCCTGTAATTGTTCAGGATTAATGGTCGGTCGCTCCACTCAGGGGTCTCCAAAAGATGATGATGCAAAACGGCTTATGATACCTTGTTTTGTCTTGCTTTTTAATGCCTAAAGCGAGTGGATTCAATTTTAAATCAAGTTGACTTATTGCTCTTTTTAAATCAATATTTTTCTTACCCTTTAATAATATAATAAAATCATAAGCTTATGATTTAACTTGTTTTTAAAGCATAATATTAAATTATTAAAATAACTTATTGTTATTAAATGATTTATTAATAAGAGTTTATA # Right flank : TTTTCGAGACTCCAAACATTTTGTTTTTAATTGCTGCATCGCTAAAGGATCCATCGGTGCAGTCATCATGGCCCGATAAGCCAAACATTCCTGCGTTTCTTCTGTTGCTTGAGATTTGGCATTCAAGCTATGACATCCCATCAGTCCCACAGAGAAAATACATCCTAAAATAAATTTGATGAACATTGGATTTTCTATAAATCAGTATTTGCCGATATCCATTCCAATTTTAAAACGCAAAACAGCAAATAGAAACCATTGAATAGACTTGTTTCATAAGTCCTTTTCATTCCTGCCTATGGGAGAAAATAAAGAGGGTTTAAACAATGATGAAAGACGTCATAGTGTATAGATCTTTTAAAATTCGCTTATTTTCTTAAAATCTTCTGCCAATATATAAGCATTTTAAAAAGATGAGCTTAATACAATGACAAATCCAGATATTCAAAAGGTAGAACTCGCAAAAGCCTATCGTTTACTTAATCATGGCCCTACTGTAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCCTATCGCATAGATAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GCTTCCTATCGCATAGATAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49-7822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLQ010000035.1 Acinetobacter ursingii isolate Acinetobacter_ursingii_BgEED03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49 28 100.0 32 ............................ TGATGACGGTTGTACACGAACGCAAAACGGCT 109 28 100.0 32 ............................ TAAACAAGTTGAAGACTATTTCTTTAATTTAA 169 28 100.0 32 ............................ AATTAAAACAATGGCATAGCATCTTAAAAATA 229 28 100.0 32 ............................ CATATCACGAACATTACTGTCCACGTCACGGC 289 28 100.0 32 ............................ TTTGTTAAATGCCCTTAGCTTATCAACAATGG 349 28 100.0 32 ............................ ACAAAATCAGGGAAATTATTTAACTTGGTGTA 409 28 100.0 32 ............................ GCCCGCAATTTCACGTGCTGCTTGTGTGGCAG 469 28 100.0 33 ............................ CATTGGAGAAAGTTTCACAACTATGATGATGGA 530 28 100.0 32 ............................ TTGTGATTGATCTAGCGGGACTTCACAGTACA 590 28 100.0 32 ............................ TACCAGATTTCGAATTGCAATATACAAATGTT 650 28 100.0 32 ............................ TTTAACGCGTAAACCGAAGCCTGTGAGCTCAG 710 28 100.0 32 ............................ ACAAAAGTTGCAAAATATTTATGACCCGTGAC 770 28 100.0 32 ............................ AACATTGCATTCAATATCGGATATGCCATTTG 830 28 100.0 32 ............................ AGTTATGAGCCGTATGTCCAGATCAAGGCAAG 890 28 100.0 32 ............................ ATTTCTTCATAACCATATGGGTCTTACCTTGA 950 28 100.0 32 ............................ TGTAATGCATCATAACCATTTAATGCCCAATT 1010 28 100.0 32 ............................ AAGCAAAATAACGTATACCCTTTTTATCAACC 1070 28 100.0 32 ............................ TTTTAGACAAGCTTATGAATCAAACTTCATGG 1130 28 100.0 32 ............................ CGTATTACTAGGGGGGGAAACTTTCTCAAAAA 1190 28 100.0 32 ............................ ATGGTGAAATTAACCCAGTCAATGACGGCAAT 1250 28 100.0 32 ............................ AGATTTGTGCGATCTTGCCAGTTAAATACCTC 1310 28 100.0 32 ............................ AATTAATGTTGTTCAATCTGCAAATGCACCGA 1370 28 100.0 32 ............................ CGATATAGAAAGCATAATTGTATTATTCTGAC 1430 28 100.0 32 ............................ GTCCGTAACTTCTTCAGTAGATTTGTATTGTG 1490 28 100.0 32 ............................ AGATCAGTGCATAAAAACGAAGATGGCACCAT 1550 28 100.0 32 ............................ TTGGTGTGGGTATCATTACTGGTGCTCCTGTT 1610 28 100.0 32 ............................ TAACTAAAGATATAAACCATCATTAAAATTCT 1670 28 100.0 32 ............................ AATGAATGCTAAGGTAGGCCAACGTTTAGATT 1730 28 100.0 32 ............................ CAGTACCAACTAGACCAACACGAGTTAATTTA 1790 28 100.0 32 ............................ ACCTGATGTTAATGTGCCAGTCAATTTAATGG 1850 28 100.0 32 ............................ GATAATGATTGATATGGCTTTATCTAAACCAG 1910 28 100.0 33 ............................ AACTGTACTTAGGTATTCACGATACTCTTCTTT 1971 28 100.0 32 ............................ TGAAACGTCCAAAATTTATCATCACCTGCAAA 2031 28 100.0 32 ............................ TTTAATGTTTGAACATGGATATCACTTTATTA 2091 28 100.0 32 ............................ AGTCGTAAAGGCTCATATTCAGACAATAAACC 2151 28 100.0 32 ............................ CATGATTTTTTAGGCTGCGCATACGGTGAAGA 2211 28 100.0 32 ............................ AACTGTGAAGCAAATGGAAAAATGGCGTTCCG 2271 28 100.0 32 ............................ TTGCCCCTTTGTTGCGTAAAGCTGCGCTTTTC 2331 28 100.0 32 ............................ CTTAACGTAAACAGTGCGACCATCCCATTTCA 2391 28 100.0 32 ............................ ACAAGCCACTCTTGCAGGGCAGCGGACTGCAC 2451 28 100.0 32 ............................ GTTAATGCAAAGAAACCCATCGTTTTCACTTC 2511 28 100.0 32 ............................ TCGCTACGCGTAACGCGGGGCGCGCGCTAGGA 2571 28 100.0 33 ............................ ATATGCAAGACGGTGGTAGTTCTATATATGTAT 2632 28 100.0 32 ............................ AATTCCATAGTTTCGATCTTGATGCAAAATTC 2692 28 100.0 32 ............................ AACAACAGCTCAAGTGTCGCGCAATCAAGGCG 2752 28 100.0 32 ............................ ATACAGCCGTTGATGATACCTTGCTTGAAGCA 2812 28 100.0 32 ............................ TATTCGTACTGGAAAAACATTATTTGTTGTTC 2872 28 100.0 32 ............................ TAATTATGCGATAACCAATATAAATAGAAATA 2932 28 100.0 32 ............................ GATCTGGGAAAACATATTGATTGTCACCAGCT 2992 28 100.0 32 ............................ GCATAGATAATGTCAGTATCACGATCCCAAGC 3052 28 100.0 32 ............................ AAACCCTAATGCTGAAAATGATCGGGCGCAGA 3112 28 100.0 32 ............................ TAACTGCAATGGCCGTAGACCGACTAAATCCA 3172 28 100.0 32 ............................ TATGATTGACAAATATTTCGGTACGTCTTTTA 3232 28 100.0 32 ............................ CAAGCCTGGCGGAATTGTCGGAACATGTCAAC 3292 28 100.0 32 ............................ ATCGCAAGCTCAGGCAGTGTGAAAGCCAAAAC 3352 28 100.0 32 ............................ ATGCAATTGGTGCAAACGGACATAACGCCCGA 3412 28 100.0 32 ............................ TGTTTCAGTTTAAAAATTATGTCTGTAGCAGT 3472 28 100.0 32 ............................ GACTCGCCGCAGCAGATCAGCTACTAACATCC 3532 28 100.0 32 ............................ ATCAGAAAGAGCAACATCACCGAACGCTGTGG 3592 28 100.0 33 ............................ CCGAAGGCACAGAATTTAGAAAAGAAGCTGAAG 3653 28 100.0 32 ............................ AGCCATGACCGCTTTAGATATGATCGCGCCAA 3713 28 100.0 32 ............................ TAATATTAACGCTATCGGGATAATAGCCAACG 3773 28 100.0 32 ............................ GAACATGCCGAGAATCTTACGACCCACAAACA 3833 28 100.0 32 ............................ AAACAGATCCGCCTTTCCAGACTTGACATGTT 3893 28 100.0 32 ............................ TGAATGTCCCGAACCCGGTTATCCAATTAACG 3953 28 100.0 32 ............................ ATTGCAGCATCCAGGCGCAAAAATGAATACAT 4013 28 100.0 32 ............................ TTGTCCAGCCTGTGGAGGTAATGACCGTTTTC 4073 28 100.0 32 ............................ TCATATTCCCGATACTCTGGTATATCAGCGTC 4133 28 100.0 32 ............................ CTCGAGCCGCAGATGATGAGACAGAGGATTAA 4193 28 100.0 32 ............................ CCATTGACTTGGTGAAATAAAATTATATTGTC 4253 28 100.0 32 ............................ GTTATTTAAATCTTCAAGATAGCCATCTATGC 4313 28 100.0 32 ............................ ACCTAAGCCTTGTGTACCTGCATTCACATAAG 4373 28 100.0 32 ............................ AAAAAACTGAAATTGGATAGACTTCTGGGTTT 4433 28 100.0 32 ............................ TGCTTTTGAGCAATATCAACTGGCTGCATTTC 4493 28 100.0 32 ............................ TTTGCTGATCATCAGAAGATATTCTTTAGCCT 4553 28 100.0 32 ............................ TCATCGAATAAAAACGGAAGATGGGTATTTAT 4613 28 100.0 32 ............................ AGCTAATGTAACCAAAATATCAGGATTTTGAA 4673 28 100.0 32 ............................ AGATACAGCAGCAAATATCGGGGCAATGCAAA 4733 28 100.0 32 ............................ ATCCTCGTCAGCAATTCCAAGTTTAACAGCGG 4793 28 100.0 32 ............................ AATTCAAGCGACATCGAATGCGATTCAGTCGG 4853 28 100.0 33 ............................ ACAGGCGCAATAGTTTGTGCGGTCCGTTGTGCC 4914 28 100.0 32 ............................ AGACCAACTAAAAAAAAGTACCAAACAAGGAT 4974 28 100.0 32 ............................ AGTATTTAAAAGTAGCAAAATATAATCATGCA 5034 28 100.0 32 ............................ TATTGAACAAATTCGCTGCGTCCCACTTTCCG 5094 28 100.0 32 ............................ TGAACCATTTCCAGAACCGTCACCATCGCCAG 5154 28 100.0 32 ............................ TTCAAGACTTCGATATGTACAATAGTCGATGA 5214 28 100.0 32 ............................ TGACTGATCTGCAAGATCGGTCATGATGAATA 5274 28 100.0 32 ............................ TTCTGAAAAGCATATTGATTGGTCTACACCGT 5334 28 100.0 32 ............................ TACATCTGGTTTTAAACGATAAAACTTTAGTG 5394 28 100.0 32 ............................ AGCACCGTCTTATGAGAACCGTTCAACTTTAC 5454 28 100.0 32 ............................ TGAAGCGAAGATTGTTCTATTTTTAAGCGTAA 5514 28 100.0 32 ............................ ATCTGATCCAAGCCCTTGTCATAACGCTGTGA 5574 28 100.0 32 ............................ TCAGATTTGAGGTTCTGGAGAAACACTTTTGA 5634 28 100.0 32 ............................ GTTCTGAGTTCTTGTACAGCCATCATCAGGGA 5694 28 100.0 33 ............................ GCTGCAAAAACCGAAGAATTACCGCAATGGTTT 5755 28 100.0 32 ............................ CAGAGGGAGTACAACCGATTAAGCCACTGGCG 5815 28 100.0 32 ............................ TAGTAAAGCGCCAGATTCAACAGTATTGAATT 5875 28 100.0 33 ............................ ATCATCCAGACGTTTAGATAAATCGTCGAAACT 5936 28 100.0 32 ............................ AACAGGGAACAAAACTCCAAGTTTCACAGGAA 5996 28 100.0 32 ............................ TAAGCCTGGCGGAATTGTTGGAACATGTCAAG 6056 28 100.0 32 ............................ ATAGTTCCAGTAGCAGCAATCGTTGCAACTAC 6116 28 100.0 32 ............................ TTGTCCCTTTTTCTGAAAATCTAGATACTAGA 6176 28 100.0 32 ............................ TATTGCTCGCCTTTCGGGAAAAATGACCAAAC 6236 28 100.0 32 ............................ TTTATATAGACAGGCTAAAGGATGAAAAATTT 6296 28 100.0 32 ............................ ATAGCAACAAAAAATAGACCTGCTGCCTTTAA 6356 28 100.0 32 ............................ ATACACACCCATGAAACCTATTGTTGATGGTA 6416 28 100.0 32 ............................ ACCAGATATAAAGCCCAGTGTATGGGCTGAGA 6476 28 100.0 32 ............................ TGCTCATTCCAATCAACGTCCAGACTATCGAC 6536 28 100.0 32 ............................ AAACAAAGTAAAACCCGAACTTCGAGATACTG 6596 28 100.0 32 ............................ TGATATTCACAATTTACTCAGCAATTCGTATT 6656 28 100.0 32 ............................ TTTGATTTCAGATAGCCGATTGTTATTGGCTA 6716 28 100.0 32 ............................ CAGCTAGTACATTCAACATACCAATGGGTGCC 6776 28 100.0 32 ............................ AGGCGCCAAAATTTATTGGTGGGCTACAAGGC 6836 28 100.0 32 ............................ ACTCTGCCTCACGCTGAACTGGAAAATGACAA 6896 28 100.0 32 ............................ ACAAACAATTAATAATCAAAAAAGTCTATCCA 6956 28 100.0 32 ............................ ATTATGGTATTGACCAGTAATCATTCCTTCAA 7016 28 100.0 32 ............................ TATTTACTGAATTTGGATTTATCAGGATTTAC 7076 28 100.0 32 ............................ ATCAAAAAAGATTTGAAACGCAAGCAAGCACG 7136 28 100.0 32 ............................ TACACATAAAGCAAATATATATCACTTAGAGG 7196 28 100.0 32 ............................ AGAGCGTTTACCCGAAGTTGAATAAGTTCTTC 7256 28 100.0 32 ............................ TCATGCTTAAGTATAAAAAACCTGTAGTTAAG 7316 28 100.0 31 ............................ TGGTGAATTTTGGCTTTACCTTGGCCATGAG 7375 28 100.0 32 ............................ GACATAAGCAGTACGTCCTGAACCATCTGGAC 7435 28 100.0 32 ............................ TATTGAACAAATTCGCTGCGTCCCACTTTCCG 7495 28 100.0 32 ............................ AAACTTTACGAAGTGCAGCTTCAACACGAAGT 7555 28 100.0 32 ............................ CGAACCCGGTTATCCAATTAATGTTGTTCAAT 7615 28 100.0 32 ............................ ATATTGAACAGAATCAATGATCTGAATTGATT 7675 28 100.0 32 ............................ TTAATGTTTGAAAATGGATATCACTTTATTAC 7735 28 100.0 32 ............................ ACTGACATGTGACCCATTTTTCACAATCTGAA 7795 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 130 28 100.0 32 GTTCATGGCGACATACGCCACTTAGAAA # Left flank : ATACGCCACTTAGAAATGATGAACTCATTAATTTAATTTCTTGCTCTGG # Right flank : TTTTTTGTTTTGTACTGGACGTACAGATGTGAGTTCATGGCGACATACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGACATACGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGACATACGCCACTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //