Array 1 1140-135 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFNH01000005.1 Escherichia coli strain JML039 sequence005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1139 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 1078 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 1017 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 956 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 895 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 834 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 773 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 712 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 651 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 590 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 529 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 468 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 407 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 346 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 285 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 224 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 163 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8825-9341 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFNH01000061.1 Escherichia coli strain JML039 sequence061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8825 29 100.0 32 ............................. ACGCCCTCGAGTGGTTTCGATTTTCTCACCAC 8886 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 8947 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 9008 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 9069 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 9130 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 9191 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 9252 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 9313 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //