Array 1 2964-1102 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOPS01000015.1 Escherichia coli strain MOD1-EC6869 MOD1-EC6869_15_length_88151_cov_59.9986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2963 29 100.0 32 ............................. CGTAGATCTAAATCTTCTTTTATTTCATAACC 2902 29 100.0 33 ............................. TGACGAGTCGAAACCGGTTATCTGTAATTGCAC 2840 29 100.0 32 ............................. CGACGTTTTCCAATATCACCCAACAATCAATT 2779 29 100.0 32 ............................. CGCCGAGGCTCACTGCGCTGTAATCACAAATG 2718 29 100.0 32 ............................. CTTCTGCATCTCGTCAACCTCCCTAAATGCCT 2657 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 2596 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 2534 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 2473 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 2412 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 2351 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 2290 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 2229 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 2168 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 2107 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 2046 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1985 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1924 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 1863 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 1802 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1740 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 1679 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 1618 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 1557 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 1496 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1435 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 1374 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 1313 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 1252 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1191 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1130 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60105-59466 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOPS01000017.1 Escherichia coli strain MOD1-EC6869 MOD1-EC6869_17_length_84783_cov_58.3546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60104 29 100.0 32 ............................. TTAATACGGCGGTTGGCACTCGAATTAAAAAA 60043 29 100.0 32 ............................. TCGGGGATCGTAGAGTTTTTTACCCCAAACCT 59982 29 100.0 32 ............................. CGTATAAAATCTATGCGTTTTTTACGCCATTA 59921 29 100.0 32 ............................. CACCAGGGCAAAACATGGACAGCATCGGCGAA 59860 29 100.0 32 ............................. GAGCTGCGGAAATACGCGCGGGGGGCGAAAAA 59799 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 59738 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59677 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59616 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59555 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59494 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //