Array 1 24796-23547 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVH01000003.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1604B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24795 29 100.0 32 ............................. GCGAGATCACCGCAGACGAGTTCAACAAGGCA 24734 29 100.0 32 ............................. GGTGGGCGACCAGTGCGAACGGTGGTGTCGCA 24673 29 100.0 32 ............................. GCGCGCGCGAAGCCCCGAACGTTGTCCTCGAA 24612 29 100.0 32 ............................. GGTCAGGCATGCGGCCACCACCGGGACGCGGA 24551 29 100.0 32 ............................. AATCTGCTTGCCCTCGGCGTCGATGTCCGCGT 24490 29 100.0 32 ............................. CATCCCGTTTGATCTACACTCGCAGGATCAAA 24429 29 100.0 32 ............................. CAGCAGATTCCGTATCTCACGCATCACTATCA 24368 29 100.0 32 ............................. ATAACACAGGCAAAAGTCGCGGAACACCTGCA 24307 29 100.0 32 ............................. ACAGCCAGGGAAGGCAAGCGGCGTGGGTCCTC 24246 29 96.6 32 ............................C TCACGGCCACACGGAACCGCCATGAGGAGTCA 24185 29 100.0 32 ............................. CACCTCATCCTGCTCGATTCGCGTCTATGCGG 24124 29 96.6 32 ............................C ATGCCACTGCGTTTCGTATACACGCCCGATTC 24063 29 100.0 32 ............................. AGCGTGTCGGATACGATGTGTTTGACTTTGGT 24002 29 100.0 32 ............................. GTCTGCGCGAGCGCGTTCACGTCGAGCGCGGA 23941 29 100.0 32 ............................. ACGTGGTCGACACACTATGCGACGCCGGACTA 23880 29 100.0 32 ............................. TTCCTTAACGTGCCGGGCCGTCTGCGCGGCCT 23819 29 100.0 32 ............................. CTATGACCACGTGGAAATGTACACCGGCGACG 23758 29 100.0 32 ............................. GTCGCGCTCACCCCCTCAAACAGCAGTGACGA 23697 29 100.0 32 ............................. GTCATCACCCCGTTGGGGAGCTCGAACCGGCA 23636 29 100.0 32 ............................. CTGATCGAACAGCGACGCAAGGTCATGAACAT 23575 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : CGGGGATGATCCGTCATAGGCGCCCGAGGATGGCGCAAACGACAGGTTTGCCCCGCATGTGCGGGGATGATCCTGCGACTGCAGGATTTTACGGTGCGTCAACGCAGTTTGCCCCGCATGTGCGGGGATGATCCGCGCTCGCCGACGTGCGAGCGAACGGCAAGAACGCCAAACCAATGAGCCGTGCCATAAACTATGTCTTGAACAACCGAGAAAAGGCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGTCAAGAAACACGCGAAAAGCACCATAAAGAAACGGACATAACAATGCACACGCCAATAGACCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCTCACTGCCGACGTGCGAACCCGGCGAAAAACCGGAGCCACTTCTAATCCCTGAATACCTGTTCGACACCGACGACGCGCAGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACAGACCACGACC # Right flank : TAGAGGTTGTCGCCGCTTAATTGTATCCACCTGTTTGCCCCGCGCCGTTGTCGCCGTTGTCTAAATGAGAGTGCAACACTGTTGTCAGGCTTGTAAGTGTAGCAGTTCGTCAATGAAGGCTTCGGCTGGTCCGGGTCAAAATGCACCTACCACTCTTATCGTCTGTTACCGCCTTCTGGGATGGCAGCAGTTTCTGTTTTTGCTACGGGTAGTGTTCTTTCTGCTACGGGTAGTGCTTTTCTGGCGCACTCGTCACTATGATCCGCCATATTTCAACGATTGTAGGTGGAGGTTACGCGAGGAACCACTACCCGTAGCGGGAGGAGCACTACCCGTAGCGAAGAAGGTACTACCTGTAGCGGTGGCAGGACCACGGCCATATCGAATTCGCTGTTTATGTCACCCGCACGGCTGTTGGTGTCGATGGTCAGACATCGACAGCCATGCGGGACGCGATTATTGGACTCCCGTGACTGACCTCAGCCATCAACTACCATCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31604-25161 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVH01000003.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1604B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 31603 29 100.0 32 ............................. CTCTGCGCCGCGCGTCGCGAACCGTGTGCCCA 31542 29 96.6 32 ............................T GCTCGTGGTGTCACTGCGCCGCCAGATGCGGG 31481 29 100.0 32 ............................. ACCGCTCCATACATTCTGCGCGATGAGCTTGC 31420 29 100.0 32 ............................. GGCAGCAAGGGCGGCACGTTCAAACGCATCTA 31359 29 100.0 32 ............................. CGAGCGCCGTGAGGCAATCGACGAAGCGATTC 31298 29 96.6 32 ............................C GCCCGTGCTGTGGACGCACGGCGTGCCCGTAC 31237 29 96.6 32 ............................A TGTCGAAGTCGTGCGCAAACCTGATATCGGGT 31176 29 100.0 32 ............................. GTCAGTTCCTTCCAGTGAATTGAATTGTGATG 31115 29 100.0 32 ............................. TACAGGTTATTCCCGCTTAATTGTATCCACGG 31054 29 96.6 32 ............................C GTATCAACCATGAACTTCAATTCAGCGACCTT 30993 29 100.0 32 ............................. AACGCGAACGCCTGTGGAGTTTCCACACTAAT 30932 29 100.0 32 ............................. CCAAGCGGGCGGGCTTAAATCCGTGGCCTACC 30871 29 100.0 32 ............................. GACAACTATTCGGGCTACGACCTCGACATGGA 30810 29 96.6 32 ............................C GCGCGAGTTTTTTGCAGTGCCGCCAACAGGCA 30749 29 100.0 32 ............................. TTCGACCCATTCATAACTACGGAAATATGGCA 30688 29 100.0 32 ............................. GACTGGTACACCAATGAGGCTGACGGCCTGAC 30627 29 100.0 32 ............................. ACGCGTCACGTGCGAGCGCTGCCGATGATTCC 30566 29 100.0 32 ............................. GCACCCACACGCGCACCTACGAGGCCTGGGAC 30505 29 100.0 32 ............................. CAACGCACCGTGCTGCGCGCGGTCCTGCAGTT 30444 29 100.0 32 ............................. TCACTTAAGGCTTACGTCTTACGCAACATACA 30383 29 96.6 32 ............................A CGCTCAACCCGTCCTCGTTGACCCGGAAGAAC 30322 29 100.0 32 ............................. GACGCGTACACGCAACGCCGTTTCTACGTCAA 30261 29 100.0 32 ............................. TACGAGTGGACGCCGGGCTTCGACAAGTCCGA 30200 29 96.6 32 ............................C GGGTGGAAATAGTTCTTGACAGGCGCCTGATA 30139 29 100.0 32 ............................. TTCGCTGACATGAACAAATCGCTCGCCACCGC 30078 29 100.0 32 ............................. CGCTACATGGATTTGGGCAAGACCATAATCCA 30017 29 100.0 32 ............................. GATTTTTCATGGGTCGAGGAAGCAACATCGGC 29956 29 100.0 32 ............................. GCTACGCGCCACAGGAGGAGCCAACCGCGCCG 29895 29 100.0 32 ............................. TTTTTGAACGTTGAGGTGTTTGAGCGTGACGA 29834 29 100.0 32 ............................. GCCTCCCGTGGTGTGCGGGAGGCCGATAGAAC 29773 29 96.6 32 ............................C GTCCACGATGTCGCCTTCGGTGAGCAGTCCGC 29712 29 100.0 32 ............................. CCGAGCCATGCGGTCTCGACGCCTCCGTCGAG 29651 29 100.0 32 ............................. CACACCCTGGCTCATGATGAGTGTTTTGCCGT 29590 29 96.6 32 ............................T TGGCCGTTTGGCATGGATTGCAGGCGGAGTTT 29529 29 96.6 32 ............................A TGCCAGCGCACCACGCCGTTGGTGATATAGGG 29468 29 100.0 32 ............................. GCTGGCATCCACTACGACCTATGGCAGCAGGG 29407 29 100.0 32 ............................. CTGACGGGCCAAGCTCGGCGATAACACGGTCA 29346 29 100.0 32 ............................. GAATCCTGAGAAAACCACAGCCCCGCCCCACT 29285 29 100.0 32 ............................. ACGTGCCGCTACGTCGAGCCATGCCCCAAGGA 29224 29 100.0 32 ............................. TTGAGCGCCCCGTTCGCTCCGGAGAACTGCTG 29163 29 100.0 32 ............................. TAACCCTCTCGTGTGGCCGTCGCAGGTTTGCC 29102 29 100.0 42 ............................. TTCGAGGACGCTGTGTGGGAGCGTGAGACGCTGCACGAGGTC 29031 29 100.0 32 ............................. GCGAACGGTGCATTGCATGCCCTGCCAGATCC 28970 29 100.0 32 ............................. TCTTTGTAGAGTTTCGTCCATGCCGGTTCCGT 28909 29 100.0 32 ............................. TCGCCTGACCGAACGACGCGTCCATTGGGTCC 28848 29 96.6 32 ............................C GACTGGGTGGACATCGGCTCGATCGTCATCGG 28787 29 100.0 32 ............................. GCGTCGAAATCGACGCCTTTAACACCGAGAGA 28726 29 100.0 32 ............................. AAGGAGTCGGTGACGGAAGCCAAGCCGTCGTC 28665 29 100.0 32 ............................. TCTTGAACAACTGCTCAAAGGCAGTGGCGGCA 28604 29 100.0 32 ............................. GCGTATCATCAGCCGCACGTCGGGCTTCGCGT 28543 29 100.0 32 ............................. GTCACCCTTGAGATTGTCGGTCTTTTTCGCGG 28482 29 100.0 32 ............................. AAGGGCGATATCGAACGTGAGCAGACCGAATA 28421 29 100.0 32 ............................. GGCACCTGCGTTGGTGCCCGAGCGAACACCGC 28360 29 100.0 32 ............................. ACTGGTTGCATGGGCTGCTGCGGGTCGTCGAG 28299 29 100.0 32 ............................. AAATCAGCCTCGCCCACGGCGTTACCGCCGCT 28238 29 100.0 30 ............................. CAGGGCCCCTTCGAGTGCATCGAACTGGCA 28179 29 100.0 32 ............................. TACGCGGTTATCGCAGCCATCGAGCACACGGG 28118 29 100.0 32 ............................. CATCAGCCATCGCTCAGGCCGCAAACTGCGCT 28057 29 100.0 32 ............................. AACAAGGCGCATAGGAAATGCAGGCACAGGGG 27996 29 100.0 32 ............................. TGAGATAGTACGACGTTGTAAGGTCGAAATTA 27935 29 100.0 32 ............................. TCAGCGCCACATACGGTATCGGCGCGAACGGC 27874 29 100.0 32 ............................. CCGCCTGAAAGCACGTCGGCGGTGCTCATGCC 27813 29 100.0 32 ............................. GTGTTGTCATGCTTGATGTGAATGTGGCCCCG 27752 29 100.0 32 ............................. TTGTGCGCTCGTGAACCGGCGTCCAATCATCG 27691 29 100.0 32 ............................. TTGTACGCTCGTGAACCGGCGTCCAATCATCG 27630 29 100.0 32 ............................. TCATATTGCGGCGGTTTTATCTGTCTTGAATT 27569 29 100.0 32 ............................. GATTCAAACCAGTTCTGTGCGCTGGATTTAAA 27508 29 96.6 32 ............................T TTGTTGATCGCGTTGCTGATCTTATCGACACC 27447 29 100.0 32 ............................. GTGTGACGCCTCCTGGAATGCGGTTCCGAAAA 27386 29 100.0 32 ............................. CACGCTACCCAGAGTTCACGCCATTCGACGAA 27325 29 100.0 32 ............................. CCCAAGCGCACATCAGCCAGTGGCATGAGCAC 27264 29 100.0 32 ............................. CGCATGCCCGTGGCCGGCACGCGCAGCTTGCG 27203 29 100.0 32 ............................. GACGGCAGCATCCTCATGGATGGCGGCGTCAT 27142 29 100.0 32 ............................. GAGATGGGCGGCGAGAACGTCCTGAGCATCAT 27081 29 100.0 32 ............................. CTCAATACCGCAAGCGCCGTCGCCAACATGGA 27020 29 100.0 32 ............................. CGCCCCACGAAAACCGTGGATATTGTGACCGA 26959 29 96.6 32 ............................A TATTTCATGATGTCATCGACACGGCTCTCATA 26898 29 100.0 32 ............................. GGTCTTGGTTGTTGGCAACGTCTCAGTGGGAA 26837 29 100.0 32 ............................. CCCTCGGTGTACATCGACCCCTCGGATTTGGA 26776 29 100.0 32 ............................. TCGCCTGACCGAAACTGGCGTCCATCGGGTCC 26715 29 100.0 32 ............................. GCTCGGACATCGACATCAGCCCCCTGCAGGCG 26654 29 100.0 32 ............................. AAACGACGAACTGAGGGAAACAAGTGAGGCAA 26593 29 100.0 32 ............................. GCAAAGCCGACTGGCTCCCCGACCAGCCCGAC 26532 29 100.0 32 ............................. TTTTTGTCTCCCTGATTGGTCGGCGTGCTCAT 26471 29 100.0 32 ............................. GCGCCATCCAAACAGGAGGTGAGATCTCAGGA 26410 29 100.0 32 ............................. GTTCGCCATGACGCGCGGGAAGTTGTTCAATT 26349 29 100.0 32 ............................. CCGGACGCAAACACTGCGGACACCATCAACAA 26288 29 100.0 33 ............................. GGGCAGCAGCCTCTTGGGGCGGCTGGACTCAAG 26226 29 100.0 32 ............................. GAGCACAAGGCCCCCTCCCGCACCAGCAGAGG 26165 29 100.0 32 ............................. ACCCGCATCTACATCCTCAAGAAAGCGGGCTG 26104 29 100.0 32 ............................. GCGACCAGTCAAGCTCAGGCACGAACCGTCCT 26043 29 100.0 32 ............................. GGCCTGTACACCTACCTCGTCGCCTCCGCGGA 25982 29 100.0 32 ............................. TCGCCGAGGTGGATGTCCAGCTTCGACGAGAT 25921 29 100.0 32 ............................. AGCCGCCACAACACAGATCGTTGAGAGCATCG 25860 29 100.0 32 ............................. TCGTCGCGCGAACGGGTCGGGTCCGGTTGGAG 25799 29 96.6 33 ............................C TGCTCAAGATACGCCTCGTTGCCCCACGCGGCA 25737 29 96.6 32 ............................C GTTTGATCGTGTAATGCTCGAACAGTTCGCTG 25676 29 100.0 32 ............................. AAAAAGCGTCTGCCGCAACAGACGCCAAGTCC 25615 29 100.0 32 ............................. GAGCAACCCATGGCAACCACAACCCCGACCAC 25554 28 96.6 32 ....................-........ CTGGTCGGCGTGAGGCACCTCTTCCATTTCCT 25494 29 100.0 32 ............................. GACGGCGCCGACCTGAACCAGCTCGTCAACGC 25433 29 100.0 32 ............................. CGGACTGGCCGAAGACCAGTCATCCTATCTCG 25372 29 100.0 32 ............................. CAAGCGCGGCCGTGACATACATCACCGAAGTG 25311 29 100.0 32 ............................. TCATAGGCGCCCGAGGATGGCGCAAACGACAG 25250 29 96.6 32 ............................T GCGACTGCAGGATTTTACGGTGCGTCAACGCA 25189 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 106 29 99.5 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : GATTGTCATCGTGCTGACGGCTGCGCCTCCCAAGATACGAGGTCATCTCACACGATGGTTGTTTGAGATATCTCCAGGTGTGTATGTGGGAAAAGTATCAGCCCGTGTTAGAGAGTTGATTTGGGAGCAAATTCTTGACAATATCCGAGATGGGCGCGCCGTAATGGTGTATTCGGAGAACAATGAACAGGGACTGGAGTTCAAAACCTACGGACAGGAGTGGTCGCCTGTTGATTTTGAGGGCCTTGAGCTGATTATGAGGCCTCATGATCAAGGCGAATCCAGCGGGAGATCTCAGGGCGCATCTCGTAGAAAAGGTTGGAGCAATGCATCGCGATATCGTCGTTTTGGTAGATAGTTGTTGCTGCGATGTTAAACTGGGGATTGCGTGCCGACGTGAGGAAGTTTGGAACCATGATGACGTTAGCGAAATGTGACCGACTGTGCAAATCGAATTTTTCGAGTATTGTCGGAGTGCGTTTTGCTAATGGAATCAGACT # Right flank : CGCTCGCCGACGTGCGAGCGAACGGCAAGAACGCCAAACCAATGAGCCGTGCCATAAACTATGTCTTGAACAACCGAGAAAAGGCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGTCAAGAAACACGCGAAAAGCACCATAAAGAAACGGACATAACAATGCACACGCCAATAGACCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCTCACTGCCGACGTGCGAACCCGGCGAAAAACCGGAGCCACTTCTAATCCCTGAATACCTGTTCGACACCGACGACGCGCAGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACAGACCACGACCGTTTGCCCCGCATGTGCGGGGATGATCCGGCGAGATCACCGCAGACGAGTTCAACAAGGCAGTTTGCCCCGCATGTGCGGGGATGATCCGGGTGGGCGACCAGTGCGAACGGTGGTGTCGCAGTTTGCCCCGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //