Array 1 300539-301117 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML703348.1 Nocardiopsis deserti strain H13 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 300539 29 100.0 32 ............................. ACCGAAGCGCTCGACTCCGTGACTGCTGAGAT 300600 29 100.0 32 ............................. GGCCCGGTGCCGTCCTCGGCGACCTCGGCGGC 300661 29 100.0 32 ............................. GTCGCCTCGTCCTGAAGGCGCGACGCGGCGCG 300722 29 100.0 32 ............................. GTGCGCTCGTCCAGCTCACCGCCGGTTTTGGT 300783 29 100.0 32 ............................. TTCGGCGTTCAGGTTCTGTCCCCGCAGACCAA 300844 29 100.0 32 ............................. CGCCGGGTCCGCCGTGCAGCTGGTACTGGAGT 300905 29 100.0 32 ............................. GAGAGGACTTCCATGATGACCCCCGACGACCG 300966 29 96.6 32 ............................T TGGGAGCGGTGGCCGCAGCACGAATGGACGGA 301027 29 93.1 32 ...........................TG CTTCCTGTCAGCGTGGTGCCAGAAGGGCTGGC 301088 29 72.4 0 G....T.TG....C...A..T...C.... | A [301090] ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.2 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : ACGTCTTTCTCCACTCTTATCGGGGTGAGGGAGGGGCTGGGCCAGGGCGGGGCACGAGAGCTTCTGACTGTCGGGATGTCCAATCCGGTGAATGGGATGGCTTCTCTGGAGGGGGAGGGGCATACCCATGTGGATGTGGGATGAGGACAGCGGTGCCAAGAGCGGGAGCGCTGGTGCTCGGCCAGGGTGGGGTGGTGTCCATGCTCGGACGTGTGAGGAAGGGCGAGTTGACCGCTGCGCTCTTGTTGGGTGTCCTGGACTCTTTCCGTGCGTGGTTGAACCCTGCTGAGTGGTCGCCTTGCGAGTGACGGCTCCGATCAGGGGTTCGCCTTCGAGGTCTTCGAGCACCGCTGAGGTCTGGTGAGCCGGGCACCGAAGAGGCGGTGTTTGGGTGATTAATGAGCCGTTTGGTGGTTTTAGAGTCAGTGGTGCGTGTGTCTGTTCCTGAAGAAGTTGGAAAAACGGCTGCTTTCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : CCGCCCTGTCAGCCCCGATGACAGAAACGCTGTCAGTACTCCCTGCGCGCACGGACGTGCTTTCCCGAGACTGACAGACAAAGGGTCGCGAGCTTGATCCCGCTCCGGCGAGAAGATCGGCTGACATGGGGCGCGGCACAGGTGGTCGTCCTACCCGTGCAGGCACTCCAGCGCTGACAAAATCTCTCTGTCAGGACCATCCGCCAGCTCCCCCACCCCGCTGGTGAAACAGGGCACCGAGTTGGGGATCTCCATGGCGTCCTCGGTGCAGCCGAGCGTTCCGGTTCCCCCACCGTGTCGACGGGCCTGCGCACCGCCCGTGCCTTCAGGGCCGGAGTGAGCGCGGGAGAAGGAACCCTTAGTCAGCTGTCAGTCAGTGCGAGCCGCACTCGGGTAGCGCTGTCGCCCGCTGACGGTGGAGTGCACGGCCCCCTACGCGCGGACACCGGCGGCGGCCCGGAACACCGCCCTGTGTGGTGCCCATGCACACAGGCGGTTCC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 243848-244244 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML703349.1 Nocardiopsis deserti strain H13 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 243848 30 100.0 31 .............................. GCGCAATCGTCGCCGTGCTGACCCTGACCGT 243909 30 100.0 31 .............................. CCCCTCCGAGTCCGCCCCGACCGACGCGGCC 243970 30 96.7 31 .............................A GCGTCAACCATCTGTGAACACCGGTCCCGGA 244031 30 96.7 31 .............................A ACTGCAAGTAGTCCACGATGACCAGGTCGAT 244092 30 100.0 32 .............................. CCAGATCGGCGCTGTCGGAGCGCACCCGGAAG 244154 30 96.7 31 .............................C GGCTGTACTTCCACACGCCGACGCGCTTCGC 244215 30 90.0 0 ...........................TGA | ========== ====== ====== ====== ============================== ================================ ================== 7 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TACGCCCTGGTCAACCACGACGCGTTCGCCGTGGCGGCCAGTGCCGTGCGGATGACCAACGGGATGGACCTGGACGGCGGCCCGCCCACCGCGGAGGAGGTGGCGTCCCAGCTGATGCTGCTCAACAGCGCCCACGAGGTCCGGGCGGGCGGCGGGGTCCTCGGCTACAGCGACGAGTACGGCGGGGAGGCGGTCGGCCGGTACGTGCCCGTGGTCGAGCTGCCCCTGGAGGGGGAGGAGCCCAGGCCCCGCCCGCACATCATCGGTGGTGCCGGAGGGGTGTGACTCCCCGTTCTTGGGTGGCTGCCGCTCTCGGCGGGGCCGGGTACGCGCGGACACGAGGGCGGCCCGCCGAGCGCGTGCCTGTTCGACAACGTGGACGCATGGGCCTGTGTGGAATCATCTGTTGGATCGGACTTGGCTTTGTGGGTGAAATGTCTGTTTCTCGGGAAGTTGGAAATTCGGCTGCTTGCCACTGTTAAGTTCCCAGGTCGCTGACT # Right flank : ATCAGTAGACTTCCCATGGGAACTGAGAAGGGGCCGCCAGCGGAGATCGCTGGCGGCCCCTTTTATGCGTGTTACCGGGAACGGACGCTGGTGAGGAACGCCGCCCACTCGGCTGAGGGTGCCTCCAGGTGACCGAGGTGGCGGTTCTGTGTGTCGCGGACGGCGGCACCTGTGCCGGTGTCCGCGACCTCGACGCAGTTGCCTGAGGTGGGCTGGCTGTAGCTCGACTTGCGGAAGTTGAGCGGGGTGGGAACTGAGGTCATGGTCTTCTACTCGATCATCTGTCGAAGGTGGTCGATCGTCTCGCCGGGGCGGAGGGCGGCCAGACGCAGGTGGTTCATCAGGTTTCTGTAGCGGGCGATCTCTTCGGGCTCCTCCAAGTAGATCCCATCGGTGTCCGTTTCCAAATAGACCACCGTGGGATCGACCGATTCGGGAAACTCCAGGATGACGAAGGGGCCTCCGCTCCCCGCGTTGAGCTGGGTCGCGCGCGTCACCTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57436-57850 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVS01000014.1 Nocardiopsis deserti strain H13 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================ ================== 57436 30 100.0 31 .............................. CCGCCGGATGGGCGATCGTCACCATCGACCG 57497 30 100.0 31 .............................. GCTGGAGAGCCTCGGTCACCCTCTTGAGCAA 57558 30 100.0 172 .............................. CTCTCTGCTGAGCGAAAATGTTGCCGGTGTGGTGCCGGGGACTCTCCTCCCCGGTGATCTTGCTACTGGTGCCACTGTGGACCGTCGACAGTGCCTCTGGGAGCAAGATCATCCTCGATATGCACGCCCCGGTGAACCTTTCCGGTCACCGCGCTAGGTCACGGCAGCGCGC 57760 30 96.7 31 .............................C GCACCAGGTCGTACTCGCCCAGCTCCAACCC 57821 30 83.3 0 ..............T........AAC...C | ========== ====== ====== ====== ============================== ============================================================================================================================================================================ ================== 5 30 96.0 66 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGAGCCCGGCCGGGTCGAGGACGTGGAGGCCTACCTGCGGGACTACGCGCGCCGCCAGCTCACGATGGTGCTCACGCCGCGGTTGATGCAGTTGAGGCGGATGGTGATCGGCGAGGTCGCGCGTTTTCCGGAGCTGGCGCGGGTGCTGTACGACTGCGGGCCGCAGAGGGCGATCGCTGGGCTTGCTGAGAGCTTCGCCCGGTTGGGGGAGAGGGGGCTACTGGCGGTGGAGGATCCTCTGCGGGCGGCGTCCCACTTCAACTGGCTGGTGATGTCGGAGCCGGTGAACCGCGCGATGCTGCTGGGGGACGAGGCCATTCCGGCGGAGGCGGAACTGTGCCAGCATGCGGAGGAGGGAGTGCGGGTGTTCCTCGCGGCGTACGGGGTTGACGGTCGTTAGGGGAGTCGTGGGGCGTTTGAGTTTTATGGGGTCGGTGTCTGTTTTTTGGGAAGTTGGAAAAATGGGCGCTTGCCACTGGTAAGTTCGCAGGTGGTTGACT # Right flank : CGGTCGCACCAGGGACAGCCACCTCCTTCGTCGCTCCAGGTCCGGCACACCCGGTCAGATCCGGTCAGACGAAGTACCGGGCCTGGAGGCGGAACAGCTCGGCGTAGAGCCCGTCGGCCCGGCTCAGCGTGTCGTGGGTGCCGGTCTCGACGACCCGGCCGCCGTCCAGGACCACGATGAGGTCGGCCGCCCGGGCGGTCGTCAGACGGTGCGTGACGAGCACGGTCACACCGCCCTCCTGGCGGCTCAGGTCGGCGTACCGCTGGAACAGCCGCTCCTCGGCCCGTGCGTCGAGGCTGGCGGTGGGCTCGTCCAGGATCCGCAGCAGCGGTGCCCGCCGCATCGCCGCCCGGGCGTTGGCGACCGTCTGCCACTGGCCGCCGGACAGTCCCTTGCCGTCCCACGACTTCCGCCCGAGCCGGGTGCCCAGGCCCTCGGGCAGCGAAGCGAGCAGCGTGTCACCGCCGACCGTCCGCAGTGCCTCAAGGACCCGCTCCGGG # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63105-64047 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVS01000014.1 Nocardiopsis deserti strain H13 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 63105 30 96.7 31 .............................A AAGCCACGGCGGCGGGACCCTTGGGCGCGGT 63166 30 100.0 31 .............................. AACGCAAAGCGTCCTCGCGCTAAGCGCGCTC 63227 30 90.0 31 ............TG.A.............. GCTTGCGCGTGCCGTATGACTCGTGAGAGTC 63288 30 100.0 31 .............................. CGGAGGACCTCACCGCCGCCCTGGAGGGCCT 63349 30 96.7 31 .............................A GGACGGTCTCGTCGTAGGTGCGGGCGATCGC 63410 30 96.7 31 .............................C TGCAAGCGGCTCAGGAGCTGCTGGCAGTCCC 63471 30 100.0 31 .............................. ACCCTTGATAACTACGTTCCGTCATGTCGGC 63532 30 96.7 31 .............................C GTTCGCACGACCACCCCAGGCGCCCCCACCG 63593 30 100.0 31 .............................. CCTGACAGCGCCGACACGGTCGCGCTACAGT 63654 30 96.7 31 .............................C AGTGCGCGGGCGAATCCGGGTTCGTCGTGCC 63715 30 96.7 30 ............................A. GGCGGTGGCGATGCCCTCGCGCCGGAAGGT 63775 30 96.7 30 ............................A. GGCGGTGGCGATGCCCTCGCGCCGGAAGGT 63835 30 100.0 31 .............................. TCGACCCTGTCTCTTTCGCTGCCGCCGAGGC 63896 30 96.7 31 .............................A GGCCCAGGGTCGCCGAGGCGGTGCCGGTGGT 63957 30 93.3 31 ..........T..................A CGTCGCTCACCATGCCCATGTAGGCGTCGTC 64018 30 90.0 0 .........................A..TA | ========== ====== ====== ====== ============================== =============================== ================== 16 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TCGGCCACACGCCGTCCGAGGAGTTCGCCCATATGACCGAGAAGCAGCGCAGGGCCATGTTCCTCGCCGAGGAACTCCTGCCCGGTCTGCCGGACGACTTCGAGGCCCTCGTGGTCGAGCAGCGGCCCCGGAAGCTGACCCGTGACGGGACCGCTGTGGACGCCCACGACTCCACGCTGTTCGCCCGCCGTCGACGCTGAGAGAGACCGGCACCAGGCATCTTGATGGGGTCTGACGGTCCCGGGAGCGCCTTTAACGGGGCGCTTTCGGGGCCTGTCGTCTGCGGGAGCTTCGGGACTGCGGTATCCCCTTCTGCTGGTTGGTGGTGCCGGAATCGATGAGCCGGGTTATGTTGCTGTGGAGCGAGGCGGTCTCAGGACGTGTGTTTTGGTGATGCTTGAGGGGTTTTGTTGCTTATGGGGTTTTGGTGGCGCATGTCTGTTTTTCAGGAAGTTGGAAATTCGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : ACCGGGTGTGCTCAGGCTTCACCAACTCAGGAAGGGCGAACTCGGCCCAGGTCACCGTGCCCAGCCCCGCGCAGAAGGGGAAGTCCAGTACGGGACGAGAACTCCAGGCCACCGCCAGGTTTTCGACCAGCAGCAGGCCTCGACCGTGCTCGGCCTCCTGCCACTCCTCAGCCGTGCGCTGGCGGGGGATGAGGGGGCGGGTGTCCTTGACGCCGTCGTCGATCACCGACAGCCGAAGCACGGCCCCACCGTCCGGCGCCATGTGAACGGCCAGCGTACGGATGACCCGCCCATCGACCTCACCCGACCGCGAGTGATCAACGGCGTTCGCGAACATCTCACTGGCGCACAGCACCACCGTCTCCACCAGGTCGTCATCGGCTGCGGCGAACCGGGTGAGATCGGTACGCAGGTCCGAGCGCACGCGGTTGGCGGTGGCCAGGGTTCCGGGGTACAGGCGCGGCTCCCAGCGCCGTTCCGGGTCGGCAGTGATGGGCGAG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 67171-67493 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVS01000014.1 Nocardiopsis deserti strain H13 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 67171 30 90.0 19 ............T.A..............T GCTGTGCAGTGACAAGTAA Deletion [67220] 67220 30 96.7 31 .............................A CCCAGTGTGGATTGATGGTGACTGCGTTCCT 67281 30 100.0 31 .............................. ATGAAGGCCCGGCTGGCCCCCGGGTCCCGTC 67342 30 96.7 31 ..........................T... TCGCTGCTGCCTTGGTCGCCTTCAGCGCGGT 67403 30 93.3 31 ............T................C TACGCGTAGTACGCGATCAGTAACCGATGAT 67464 29 90.0 0 ......................AC.-.... | C [67486] ========== ====== ====== ====== ============================== =============================== ================== 6 30 94.5 29 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGTGTGTAGAGGTGGCTGACCTGCACGGTGCAGCAGCGGTCCGGGACACCAGGCATCGTGAGCTTGGTTTCCTTGTTTTTCCTGGCGGAGAGTGGCATGCCCTTTTGGAGGTGACAGAGCAGGAGCGTCAGTAGCGGTGGCTTCGAGTGGTCATTCGATCAGCTTGTCAAAGGCGAAGTAGGCGGCGCCGACCGTTGCCAGGCCGATGGCCAGGGCTGTTGCGGGATGGTCGCCGCCAACCCATCGGAGGCCAGCAATGACGACTCCAGAGATGCAGGCGAACAGAAGGATCAAAGCAGTGCGGAGGCCGATGCGTCCTTCGCGGGTCTCATGCTCTGGGCTCTGGGGGGCCATGAGATTGTGGCTTCCTCTCTAGCGAGGGACATGTTACTGCTCAGCAGTTGATCGAAAGTTGAGCCAAGCCTACACTGGTTGAGTCGTGCCTCCGTGTGCTTTGAGAACATCCCCGCAGCTGTGAGGGTGGTGCGACACTGCTGTCT # Right flank : GGCACACAGGCCACTCGGTTTACATGAACGGGTAAACCCGTTTGGCCGGATGAGGCCAGGGCGAATCTCGGCGTTTGCCTGCGAAGGCGCCTCGAACCCCTGTTCAATGTCGGCCATGAAGCACGAAGGGCGCCCTCAGCCCTGGAAGGACCGCCTCTCCGAGGCCGCCCGCCGCGTGTGGGCCAAGCACGACTTCGACTCCAACGCCTGGCTTCCCCTCTACCGCCACATGGCCGACAGTGCTGCCGTCGCCACCAAGCTCTGGGACTCCTGGCTCCCCGTGCAGGTCCGCGACCACATCAGTCGCGCACTCCCCAAGGGCGAGGATGACGCCCGCACCCTCGCCGTCTGGCTCGCCGCCACCCACGACATCGGCAAGGCCACCCCCGCCTTCGCCTGCCAGGTCGAACACCTCGCGGACGACATGCGCCGCGAGGGCCTGGAGATGCCCCTCCAGAAGCAGACGGCCAACCGCGAACTCGCCCCCCACGGCCTCGCGG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:-0.21, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 77088-77605 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVS01000014.1 Nocardiopsis deserti strain H13 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 77088 30 100.0 31 .............................. CAGCATCTCGTCAATGGAGGCGATGTCGAGT 77149 30 96.7 31 ............................T. ACGGGTATTGAAGTACGGGCGAAGTACAGAA 77210 30 96.7 31 .............................G GCCACGTCCTCGCCCTCCAGCCAGAGGCGTC 77271 30 100.0 31 .............................. CTCATCCCCTACGAATGACGTGTGTGGCCCC 77332 30 100.0 31 .............................. AGTGGTTGCTCGGGAGGGGATAGGGCGGCGG 77393 30 96.7 31 ...........A.................. GGGAATCCCCAAATCCCCGGGGCCTGGTCTA 77454 30 96.7 31 .............................G AGACGTGTGCAACCACGTAGGCCACGTGTCT 77515 30 90.0 31 .................A..........TG AGGAGCTCGCCGCCCGCATTCGGAGCGATTA 77576 30 90.0 0 .........................A..AA | ========== ====== ====== ====== ============================== =============================== ================== 9 30 96.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GGGGTGAGCTGCTGGAGTCGGGTTACAGCTATGCCGACGAGGTGGTCTGGTGACGGTCGTCGTGCTCACGAACTGTCCGGCCGGGCTGCGCGGGTTCCTGACCCGATGGCTCATGGAGATCTCGGCGGGGGTGTTCATCGGCAACCCGTCGCGCCGGATCCGGGAGGCGCTGTGGGCGGAGGTGAAGGAGTACGCGGGGAACGGAAGGGCGTTGCTGGCGTACAGCGATGACTCCGAGCAGGGGTTCACCTTCCAGACCTTCGAGCACCACTGGGAGCCGGTGGACCACGAGGGGCTCACCCTGATGCACCGACCCAAGAAGGTGCAGGAGGAGAACAGGAGGCCTCCGAAGAGCGGGTGGAGCAAGGCCTCGAAGAGGCGGCGCTTTGGTGGTCGGTGAGTCGTTTTGGGTGCTTTGGTGGCTTGTGGTGCGCGTGTCCGTCTCTGAAGAAGTTGGAAAAACAGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : AGACCAGACGGGGAGAGAACGTCATGAGCGTGATGCCCACGGAACCTGGAAGCGGTCCCGGAGTCAGGCACGACCTCAGCGGATACGTGCTCGTTCCTGCAAGAGGTCCGTGCTCAGTCATCATCGTCGCGCTCATCGGCGCCATCGGTGACACCATGCGCGCCGTGCAGGAGTTCAGTAGCTGCATCGCAGTGCTGATGATCTGCATGGCCATGGGCCCGGTGCTGTGGCTGAGGAGGTCAGAGCGGGGCCAAGGCGCCGGCACCGCCGCGCGCGCTCTCGTAGGCGGAGCCGACGCGCACGAGGGTCGCCTCCCCGAGCGGTCGCCCGATGAGCTGGAGGCCGAACGGCAACCCCCCGGAATCCGGGCTGGTCGGTACCGTCAGGGCGGGCAGGCCGGTGAGGTTGGCCGGTGCGCACAGCCTGACATGGGCGTCGGAGACCGTTTCGACACTCGTGTCCGGCCAGTACAGGTGTTCCTGGCCGACCGGTACCGCAGC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 82716-83416 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVS01000014.1 Nocardiopsis deserti strain H13 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 82716 30 96.7 31 .............................A CGCTGGCTACAGGATGTCTTCGCCTCGCTGC 82777 30 96.7 31 .............................T TCAACGCGATTCTGGCCGACGGCACGGTCGT 82838 30 100.0 31 .............................. ACAGCCGCCTCGTGGAAGCGCTGTGCCTGGC 82899 30 96.7 31 .............................G TGCCCCTCATGTACACGAGCCCGTCGACCGT 82960 30 96.7 31 .............................G TGCCCCTCATGTACACGAGCCCGTCGACCGT 83021 30 96.7 31 ............................T. GTGACCGTATTCGTGGCCTCGGCCAGACCTG 83082 30 100.0 31 .............................. GCCGGTATCTCCTACCAGCCGGGCCAGGATG 83143 30 96.7 31 .............................T CACTTCCTCGTTTCCCCCGGTCTACCGTGGT 83204 30 96.7 31 .............................G AAGAGTCAAGGGCGGGCGTCGCGGTCTGCGC 83265 30 100.0 31 .............................. CGGCCGCGCGGACCATGTACTGGAGGGCGCG 83326 30 96.7 31 .............................A GCTCCACCAGCGCGGCGCGGTTGTCCTCATA 83387 30 93.3 0 ............T................G | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CAGGATCAGTGACGCATCCTATCCCCGTGCCCCGGCCTTCCAACGACCTGCTGCACCGACCGCTGCCGCCGCTGCCCAAGCGCAGTCCGCTGATCGGTCCGTTCTGCCCGGCCTGTGAGCACCCCTCGTGCCGTCGGTGTCGGGCCGCGCACCTGCCCCGCCTGGGCGGACACCGCTCCGAGTTCGTCCGCGAGCACGTCCGCGCGGCAGTTCTCCAGAGGCATCACCCGCACCTGCTCATCTGGTTTGGTGAGCAGACTCTGTCCTACTGGGTGGCCTCGCCTGTCGGACTGACTGAGGTTTCCGAATCCGAGGTGCTGTTGCTCCTCGCGGAGCCGGTTTCCGTGAACTGAGGGGTTACCGGCAGGGGCGTGATGCGCTCCTGCCGGTATTCTGCGGACATGGTCTTCCCAGGGCTGAGCGCGTCGTCCGTTTTGTCTGTTTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GGCCTCTAGGTTCGCTTCTGAGCCGTGTTTCAGGTAGCGGGTGAGTCCTGGACGGACAGTTCTATGGACAGTTCCATGCAGCGTTGGCGGGCCGGGGAGAAGTCGTAGGGCATCTTGCTGATGGCTTTGACCATGCTCATGGAGCCTTCCTCCCGCTTGCCGGGGATGAAGTTGCCCTCGTCATCGGTGGGAGGGGGGTGCAAAATGTCCCAGGCGTCGAAGAGGGCCTCGTCCTCCTTATCCAGGCCGGACTCCTCGATGACGGCCTGCAGAGCGTTTTCGAAGGCGTGCCGTTCGGCGGCCACGTGAGCCACCCGTGGATCATCGACGGCGACACTGTCGTCGAGTGCCTCCTCGGCGTCATCGATGCGGTCGGAGTCCTCCCGCAGGGTGGGATGCGTGGCCAGGGCGATGAAGCGGGTGGCCTGGACGGCTGCGCCGAGCGGGCCGAAGATCCGCTCAGTGACCAGCAGAGTGTCCAGGTCCGCCTGCCGCAGGGA # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 85097-85798 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVS01000014.1 Nocardiopsis deserti strain H13 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 85097 30 96.7 31 .............................T CGACTGGGAAGCCCGCCGCATCGGCAAGGAG 85158 30 100.0 31 .............................. TCGGCATGGTCGTGCTGAGGCTCCGCACCTA 85219 30 100.0 31 .............................. AGTAGGCCGCCCATGACGAAGGGCAGGCCGA 85280 30 93.3 32 ............................AC GAATCTCAAGGGCCTCGCGCGCGTCCTGCGTG 85342 30 100.0 31 .............................. CGGCGAGCAGGTCCCTGTGGGTGTCGATCTG 85403 30 96.7 31 .............................A GTGACACGCGCCCGATGGTGTCGACAAACTC 85464 30 96.7 31 .............................C CCAGCATCGGCAACGGCCAGCTCATCGGCCG 85525 30 96.7 31 .............................C GGTCAGACCGGCCTGGAACGTCCAGGTGGTC 85586 30 100.0 31 .............................. ACCGCCTGACCGAGCTGGCCGACGTGTCCAG 85647 30 96.7 31 .............................T ACACCCGCCGCGCTTGCGTTCACGCCGTGAA 85708 30 100.0 31 .............................. TCCGGCGGAGCGACAGGAAGTGGTCGAACAC 85769 30 83.3 0 ............T..........A.G..TT | ========== ====== ====== ====== ============================== ================================ ================== 12 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GGGTCGCTGCGGCCCGGTGCTGCTTGAGACGGCTGATCCCGCATTCGACCGCGTGCTGGGCCTTGTGCCGGGCCTTCAGGCTCACTTTGGCGGTCGCGGGGTTGCCGGGGCGAGGCCGGATGGGTGCGGTGGCGGGCGCTGAGCGTGCGTCGTCGTCAGTGCGGATCCAGTTGCGCAGTGTCTCACGGTCGATACCGAGCTCGTCGGCGATGTGAACGATCGTCACGCCGGGACGGGACCAGTACAGGGCGGCGGCGTCGGCTTTGAACTCGGGTGGGTGGTGCTTCATGGTCACGGGGTGGACTTTCCCTCGTGTTTCCAGAGCCGGAGATGCCCACTACCCGGGGGAACGTCCGAGGGATTACCGGCAGGGGCATGCTGCGTGCCGGTATTCTGCGGCCATGGACTTCCCAGGACTGAGTGCGTTGCCCGTTTTGTCTGTTTCTTGGGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : TGGGAGCACGGCTGATGCCCTCCCAAGGCCTCAGGGGCAGGACTCGTAATCCACGGACACGCTTCCGGCTGCGGCGTCGTAGCACTGGCTGACCGGCGGTATCCCGGAGACACCCGGCACGAAGTCGGGGTCTCCGAAGGTGAGCGGACCCCGTTCGGGAGCACCCGGGAAGGTGAGGACGAGCCTGTCGCCGACCGAGGCCGGTCCGGGAGCCTCCTCCGGCTCGATCGGGCCCTCAGGAGTGGGAACCGTGAACAGCTCAGGCACGGAGACGCCGTGGCCCTCGACCAGGTTCCCGACGAGCACGGTGAAGCGCACCCCCTCGGGGACCTCCTCCACGGAGTTCACGGAGAGGTGGAAGAGCGTCTCGTACGAGTCGGGGGTGGCCTGGAAGGTCGGCATGCCGTTCGGCGAGGTGATCACCTCCGCCAGCCATTCGGCGTTGGTGCCGAAGGGCGTCGGCTCCGGCATCACCCATTCCGTGTCGAGTCCCTCCGTAC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 178952-179165 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVS01000014.1 Nocardiopsis deserti strain H13 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 178952 30 100.0 31 .............................. CGTGGGCTCTCGCCTGGATTGCTAACGCCTA 179013 30 100.0 31 .............................. GAACTGTCGCGGCTGCTGACGCAAGGCAGCG 179074 30 100.0 31 .............................. CGGACCGGAACCATCGCGGCCGTGCCCAACT 179135 30 90.0 0 G.........................G..T | T [179157] ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 CGTGAGCCCCGCGCACGCGGGGATGGACCG # Left flank : CGTCTGGCGCACCTGCGGATCGCGGCTGCGGAGTACACGCACGAGCTGCTGTCCGAGGTGGAGTTGCCGTGGATCGAGGAGAAGCGCCAGGCCTACCGTCGGGCTGCTGCCGACTGCTTTGTCAGCCTTGCCAAAGCCAGTGACGAGCCAGAGCAGGGGCTGATCTGGTTGGAGCGGGCGAGGGAGTCCGACGACCTGAACGAGGCCGTCTACCAGGAGATCATGCGAACCCAGGCGGTTTTGGGGCGGTTGGACGCGGTTGAGCGTGTCCACCAGGAGCTCAGCGAGCGACTCAAGGCCATGCGCGCTCGTCCCAGTGTCACCACGAGCAAGCTCTTCCAGGAGCTACTCGGCCGCTGAAGTTTCGTTAGCTGGGGCGTTGGTGGAGTTGGGCGCCGGTTGTGTGAGTATGGACGCGGAACGGGCGTCGGAGGTGCCTTAACAAGCTCTCCGCATAGATTGCGAGGAGATAACGGCCTGTGTTTCCGCAGGTCGTTAAG # Right flank : TATGCCGTGTCGGCCGCGGACTCGGCTGAGGAGATGTCCTCGCGCAGTTTCTCTGCCCTCTCGTGGTCGCGGGCGTTCGCCGTCACCCACCGGTCGAACTCCTCCACCCCCTTGGGTTATGAGAACCTCAGCCCCGCTATGCGTCACCCCGTCAAGAAGCTCGCCCAAGGTGAACTGACGGGAGAAGAAGGCCTGCAACCAGCTTGTCAGTGGTGTACACGGTAGCGCTGGACGGACCAACTCCCTGTCCAAGGCCGCCTTCAAGGCGCTGCGCCTGGTGAATCTGCCTCCGACACATCGGGGGTTATCGCCTCGGCTGTCCTGGCCCTGTTCCGGTCCTGACCCGGCCTTACCGCATGCCCAGACCTTACTCAGGGTTGTCAACCGGTAGCGGGAAAAGATCCAAAGCACAGGGGGCATGACATTTGTCATGCCCCCTGTATTCAGTCGTGCACGATTCAGCTATTTTCATATTGTCCGATCGGTACTCGGTACCTATA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTGAGCCCCGCGCACGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 8 203671-204432 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWVS01000014.1 Nocardiopsis deserti strain H13 contig014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 203671 30 96.7 31 .............................A GTGCGCTTGGACTCATGGGAGACAAGCCGGA 203732 30 100.0 31 .............................. GGGGTCTTGGTCTCGCTCCCGTCGGCCTTCG 203793 30 100.0 31 .............................. CCGGTCTCACGATCCCTCCAGGGATTCACCC 203854 30 100.0 31 .............................. GGCAAGGAACCGCTCTGGCCAGTGCAGCTAG 203915 30 96.7 31 .............................G ATCGAGACATCCAGGCGCTCCTTGGCCTGCT 203976 30 93.3 31 ...........C.................T CCGGCCACGCCGACCCGGTAGACCACAGCTG 204037 30 96.7 31 ............................T. TTTCAGGCTCGGGTACGTACAGAATCCGCTA 204098 30 96.7 31 .............................T GGTCAAGGTTGGGCTCCCGCTCACCGCCCGC 204159 30 100.0 31 .............................. GCAGAACCACGTGACGGATCTGCGGGTTCTC 204220 30 96.7 31 .............................T CTTCTTTAGCCATGCGGCGTTCCACATCGGC 204281 30 100.0 31 .............................. CCGGCAAGTTCGAAGGGGCGCACGCGGACCA 204342 30 96.7 31 .............................G AACCGAGCGAACGAGAAGAGAGACACCATCA 204403 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 13 30 97.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : TCCTTCTGGTCTTCGGCGGATGGATCGTCTGGGGTATCGGGCAGAGCTTTCAGAACGCCCATGAGCGCGCCCTCACCCGCGAACGGGAAAAGACCAAACGGCTCCAGTTGCGTCTGGACGCGCAGGAACGGGCTCAGGAACGCGCCGACCGTGTCTACTTCGACACCGTGAACCGCCACACCGGTCCGCTCTCCCTCCCCGAGCCGGAGGCCGATTCCGAACACGGGAAGAACGACGGCTCCTGATCACACCCGTCCCGAACCCATGCGGTAGCGCCCTGAGCTGTTCGAGGGATGTCTGGCTGGGATTGGCCTGTCCCTGGAATCGTAATCCCACAAATTAGAGTTCGGTGATGGATCACCGGCAGAGGAGTGATGCGCTCCTACCGGTATTCTGCGGCCATGGTCTTCCTGAGGCTGAGCGCGTCGTCCGTTTTGTCTGTTTCTGAAGAAGTTGGAAAAACGGCTGCTTGTCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GGCCAGGCACCGCGCACGGCGTCAGCTGAGCGTCTGCGTTCCGATGACCGACAGCACCTGGAGCTTCTCGTAGCTCTCGGTGCCGGGGACGGCGGTGTAGACCATCAGCGAGTGCGCCTGACCCGGGTCGACCAGCCGCTGGCAGGTCAGCTCCAGCGCGCCGACCTCGGGGTGAACGAAGTGCTTGACCTCGTGGGGACGTATCCCGATCTCGTGGTCGCTCCACACCCGCCGGAACTCCTCGCTGCGGGCCAGCAGCAGCTCGGCCAGGTGGGCGGCGGGGGACTCCGAGCCGCGGAGGGTGGCGAGCTCACGCAGCCCGGCGGCGTACATCCGGGTCAGGAACGGGTGCTCCTCGGGCGCGTAGATCCGCCGGGAGTCGGGGTCGGTGAACCACCGGTACCCCGCGCTACGGGCAGGCCCCGTGTACCGCGTCGCGTCCCCGGTCAGCGCGACGCCCATCGGGGACTGCCGCAGGGTCTCGCCGAGCTCGGTGACAA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //