Array 1 37867-39487 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMJF01000004.1 Lacticaseibacillus paracasei subsp. paracasei strain KMB_598 KMB-598_S9_L001_R1_001__paired__contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37867 36 100.0 30 .................................... TTGGAACAAAGGGCTGTGACTAGTGACGCT 37933 36 100.0 30 .................................... TGATCACCGTCTTGAACGGCCACTTGGCTT 37999 36 100.0 30 .................................... CGAGTCGGCACGGATTCAACATGCGGCACA 38065 36 100.0 30 .................................... ATACAAAAAAAATCATACAGCCTGCATCAC 38131 36 100.0 30 .................................... CACTTGATGCTCACGCCATCCCAAGCATTT 38197 36 100.0 30 .................................... CGGCATTGCCTCGGCGCATGGCTGGGGTGC 38263 36 100.0 30 .................................... AAAAACAAAAGTTCAAAAGCGTGGTTCAGC 38329 36 100.0 30 .................................... CTAAACGTTCGCGAACCTCATTCAAGCTAA 38395 36 100.0 30 .................................... TTTAGTTAGTCGGTCAATGTCTGCTACTCT 38461 36 100.0 30 .................................... GTGTTAGACTTAGATGTGGATGTTGCCCCG 38527 36 100.0 30 .................................... ATACCAAGGCGGTGGCATGGCGTATACTGA 38593 36 100.0 30 .................................... AGAACTGGACGCCGAACGCTTGGACACGCC 38659 36 100.0 30 .................................... CCCTTTCGCCGCCATCTTTGATCGCCCACG 38725 36 100.0 30 .................................... GCTATCTGGCTTGAATTCCTTAATCGATTT 38791 36 100.0 30 .................................... AAGCCGATGATATAAAGAAAGACGCCCCTT 38857 36 100.0 30 .................................... GAGGCTTACCCCGTCTTTACCAGTTGGTCC 38923 36 97.2 30 ..............C..................... TTGTTCATAGCAGCGTTGGCACGGGTATTG 38989 36 100.0 30 .................................... ATGAAAGCCAGCGAAGGCACATTTTTTACT 39055 36 100.0 30 .................................... CGTGTTATTGTAATTAGTCGCCAAGTCTTG 39121 36 100.0 30 .................................... GCTGTCAAGTATCTCATGTCCTTCTAGAAA 39187 36 100.0 30 .................................... AACGTTGACCGCTCTGTCTCACGAAACTGG 39253 36 100.0 30 .................................... GAACTTTGTATCGTTTCTCTTTGCGCACGG 39319 36 100.0 30 .................................... ACGTTAAACGTACACCATGCCGCACAGTCC 39385 36 100.0 30 .................................... GACGATCTCGCACATGCTCAGTGATATGCG 39451 36 91.7 0 ..........................T..A....C. | T [39483] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.6 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGGATTTAATTCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGACTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAATGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCA # Right flank : CCATAATTCCGAGAAAATGAATTGGCGGATTTTAGAGTCAATCTCATGCTAGAAATAACCAATTCCGCAACTTTAACGTCTTCGGTCTGGTTAGCGTTCGCAATATTGATGGCTCTAGCAACTCAGGTAATTGCCGGTGCGGTTTTCGTGGACCGCTAACATCTTTATTATGCCGTCAGCCATGCTTCAAAGTTAGGGATGTCTTTAACGTACCTGCTGGTGTTGACTATGACATCTGCTACTCAATTAATATTGCCGATTTGCTGACTACACAACTGCCTCTGTAGTGGGAATATAGGCAGTGACGCCTGTAACAATATGATTTAACATTCAAGTTTCTTCAAGGGAAAACATATGCGAGTGCTCATGTCCTTCAAAATGTTTGATGACTGCGAACATCATCGATTATTGTGAAACAGCAGGCATACCTGTCTAAACTTTTTTCGATCAGTGCTTAATTAACGAAGTTCTTCTGTGTCAGTCGCAACCTGAGTTGAGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //