Array 1 82169-81689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010822.1 Thermus aquaticus Y51MC23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 82168 36 100.0 36 .................................... TGGCTACCCGCTTCTTGAGCGAGATGGCTGTTTGAA 82096 36 100.0 34 .................................... CCCATTCTCCCGGGCATACTCCAGAACCTTCCTG 82026 36 100.0 43 .................................... GCCCACTCAGGACCACCTACCGGCTTGTAGCCTTCCCTGAGCA 81947 36 100.0 41 .................................... CATCCTTGGCTAGGCAACGCTGGGTTACGGGATACCCATAC 81870 36 100.0 38 .................................... TTCACGCCGGCTTCCGTGGTCTCCACTCTGGCCCCCAG 81796 36 100.0 36 .................................... TAGTACCTCAACTACATCCGCCGGAAGCTCGCCAGG 81724 36 97.2 0 .........T.......................... | ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 99.6 38 GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Left flank : GGGCCGCTTCCTGGAGGAGGTAGCCCACCCCTTGGGCTTCCGCAAACCCCTGGGGGAGATGATAGAGCTCCAGGCCTACCGCCTTAAGAAGGCTATCCTGGGCAAAGAAGCATACACGCCGTATTACTTACGCATCCACTAGTTACTTCCACCATCTGCCTTGTTGCGGGGCGAAGGCATCTCTTCACGCTTCCGTAGCGTATAGTAACCTTCTTTACGCCTCTCCCGACACACTTTTGTACTTGGTACACCGTTGCCCGAAAGTGCTATAATGTCTTCGTCCCGGGTATCCGGGAGGGGACCTTGAAAGCCAGTTTCTTCCCACGGGGACGGCGATATTCGCTTATGCATTCTCCCTTGACCCCTTTTCCGAAGTCTTCCCATCGGCCTAAACCCCGCAAAACACCCACCCTTTGGCCGATGCATATTCCAAGCTTCATCTTTCTCATAAACACCCCCTCCGGCGGTGCCGTCCAGAAGGGTATTCTTAGGGGGGTAGA # Right flank : CGCCGGGTGTTTCGGATAGTCTAGACCCATGGCAAAACGCCTCTACGCTGTGGCGTATGACATCCCCGACGACACCCGCAGGATTAAGCTGGCCAATCTGCTCAAAAGCTACGGGGAGCGAGTCCAGCTCTCCGTGTTTGAGTGCTACCTGGACGAAAAGCTCTTAGAGGACCTGCGTGCCCGGGCGAGGCGGCTTTTGGACCTAGGCCAGGACGCCCTGCGCATCTATCCCGTGGCGGGGAGGGTGGAGGTTTTGGGGGTGGGGCCGCTTCCGTCCCCTCGGGAGCTCGCCGTGGTTTAGGGGCGTGTGCCAACGCCACATCCTCTTGGCCCAAGAGAGGGGCCTTCCCGGGCATCAAGCCCCCCCCGGCTTGGCCCCCGGGCCAAGGTGTGCTACAATCCCTCAAGGCGGGGGCCGTTAGCTCAACTGGCAGAGCACCGGTCTCCAAAACCGGGGGTTGGAGGTTCGAGTCCTTCACGGCCCGCCAGATGGCCCCTCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 550812-550252 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010822.1 Thermus aquaticus Y51MC23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================== ================== 550811 29 100.0 33 ............................. TGGTTATTTGACCCCCTGGCCGGGGTGGATACC 550749 29 100.0 32 ............................. TCCGGGAGCCAGGAGAGGAAGCGTTCTCGCCC 550688 29 100.0 32 ............................. ACTTCCTCTCCGGCGACTCGCACGGCGGGGAA 550627 29 93.1 196 ......A............A......... CCCCTTTATTCCCGGCGTGGAAGCGTGATAAGATAGGGCTAACCCACCGGGGTGGGCCTGGGTTCCCGATACCCCGGTGCAGGACGCACGGCCTTCCAGGAGGCCGAGGCCCCTTTAACCCTGCCTGAAGCGCAAAAATCCAATCCTCTGACTACCGCCCACCCCCCACCTTCCGCATGGGCACCAGCCAGATCTG 550402 27 86.2 34 --.........A................T ACCCTAGCCCTCAGCAACGCTCAGGGGGCGGTGC 550341 29 96.6 32 ...........A................. CCGATGTCCAGGATGATATCCCGGAGGTATCC 550280 29 72.4 0 T............G........C.TTTTT | ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================== ================== 7 29 92.6 60 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : GGATCGTGGCCCTGGTGGCTACCCTGGGAAGCCTCTACTACTCCGAGGTGCGGCTTTTCCTGCCCTGCGAGCTCTGCTGGTACCAGCGCATCTTCATGTACCCGCAGGCCGTCATCCTGGGCCTGGCCCTGTGGCGGCAGGACTTTGGGGTCTGGCCCTACAGCCTGGCCCTTTCCCTGATTGGGGGGAGCATCAGCACCCTGCACCTCCTGGAGCAGAAGTTCCCCAACCTCTTCACCCTGGCCTGCAAGCCCCCGGTGCCCTGTTCCGTGGAGTACATACCCCAGTTTCCCATCCCCCTTCAGGCCCTCATCGCCTTCGTCCTCATCGCCCTCAGCATGGCCCTTCTCGCCCGGGAAGCCCGTGTGGTAAGATGACCCAAGCGCCCCACCCTCACCCCTTCCCCCGGCGCGGCGGAACTTGAAAACCTCTTCCCGAAACTTCTCCCGAAAAGACACATAATGGGGGGTGATCGGGCATTTTCGCCGTCCTGGTCAAGT # Right flank : TTATGGGGTGTACCCCAAAGCCTCCAGCACCGCCTTGGCCCGGAAGTCCAGAAGGGTCTCCGGGCCGTGGACCTCGAGGACCCTCTCCCTCGCCCCCCGCTCCACCGGGGCCAGGGCCAGGAGGACGTGGAAGGGTTGGAGAACGTCCAGGGGAAGCCTGCCCCCGGCGAAGATGACCAGGTCCGCCTTAAGGGCTAAGGCGCCCACCTCCTCGGGCCTCAGGGCCACGTGCCCCCGGGCCCTTTCGGGCAGGCGGGCCAGGAAGCTATCCCCCTCGGCGAAGCTCCCCGCCCTCACGGAGACCTGGCCCAGGGCCCGGAGGAAGGGGGCGAGGCCCGGGCGCAAAGGGCCAAGCCAAAGGGCTTTGGACCCCGGGAAGAAGGCGGAAAGGAGCCTGTCCAAAGCGAGCCCCTCCGTGTAATGCCCCACGAGCCCCAAGGCCCCCGGCACCACCAGGTCCACCAGGCCCGCCCGCTCCGCCTCGGCCTCGAGGCGCATCC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-2.95, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 869567-871070 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010822.1 Thermus aquaticus Y51MC23 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 869567 30 100.0 37 .............................. CGCCGTGTCCCTGAATGGGGTAAGCTACTCATGCCTC 869634 30 100.0 36 .............................. ACGGCACCCCGCCCTGGCCAAGGCCTGGCCTCGGGG 869700 30 100.0 37 .............................. TGCCGCACCTGGCGGGCATAGGCCCGCCAGACACCGG 869767 30 100.0 36 .............................. GCGCTATCCTGGACGCTGAGGTGAAGCCGGTTCCTC 869833 30 100.0 36 .............................. GCCATGACCGGGTCGCTCGCCCTCCTTGGGAGGCCT 869899 30 100.0 38 .............................. GGCGGCGGGAAGCCTCCCTCCCCATGGTCAAAGACCAG 869967 30 100.0 36 .............................. GTCTTCTCCCTCCCCTCCCTCTCCGGCCTCCTGGTC 870033 30 100.0 35 .............................. CCCACCACCCGCCGCGGGCGCCCGACTCCCCTCCG 870098 30 100.0 38 .............................. GCCATAGGCCTGCTCCTTCCTGTCCTGGCCAAGGGCGG 870166 30 100.0 37 .............................. GCATAGCTCATAGCTAAATGCTAAGGCAAAAGCTTTC 870233 30 100.0 37 .............................. GCCGAGGTGAAGGCCGAGTTCATGGGGAGGGTTCCCG 870300 30 100.0 37 .............................. CCTCAGACCAGGCCACCCACCACACCCTCACCTTCCG 870367 30 100.0 38 .............................. GCTCCGAGCGGCGGGGTACGAAGCCCATATCTGGGAGT 870435 30 100.0 37 .............................. ACCAAAAACCAATAGGCCGTCTCCCGGTCTACCTCCC 870502 30 100.0 38 .............................. GTGGCCAAAAAGGCCAGCAGAGCCAGGGCCAGGACGTA 870570 30 100.0 37 .............................. GACTCCTGAGCTGGTGGAGGTGGCCAGGACCGCCTAC 870637 30 100.0 38 .............................. GCGGGGGGCGTGGGGGGGGGTGAGGGCCGCCCAACATG 870705 30 100.0 40 .............................. CTCCTGCCTGCGGGTGAGGCCGTCCCCATCTACCTGGAGG 870775 30 100.0 36 .............................. CGGACTCCACCGGTAACCTCGGGACCGACACCCCAC 870841 30 100.0 38 .............................. AAGTAAGGGAGCTTTTCAGCACTCTCTCCCGCATGTTC 870909 30 100.0 35 .............................. GGGGTACAGGGGGCCGCCAGGCCCCCTGTCTGCGA 870974 30 100.0 37 .............................. GGAGGCCCCGGGAACTGGGAGGCCCGCACCACGAGGC 871041 30 96.7 0 ...............G.............. | ========== ====== ====== ====== ============================== ======================================== ================== 23 30 99.9 37 CTTTTGACCGTACCTATGAGGGTTTGAAAC # Left flank : ACCGCCGCCACTCCCTCAACCTGGACGTAGCCGAGGTGTTCAAGCCCGTCCTCGCCGACCGGCTGGTCTTCCGCCTTGTTCGCAGGGGACAGGTCAAGCCGGGGCACTTCATGCGGGAGGGGGAGGGCGTCTTCCTTTCCGAGGCGGGAAGGAGGCTCGTGGTGGAGGAGTGGGAAAAGACCCTCCAGACCACCTACCGACACCGCGCCCTGAAGCGGGCCGTCTCCTACAGGACCACCTTGCGCCTGGAGCTGTACAAACTGGAAAAGCACCTGATCGGGGAGCAACCCTACACCCCCTACCGCCTGCGGTGATCTTTGACGGGGTCCAAGTTGGCGCCAACCCCCGATCCCCCCAAAACCCCGGGGGGTTGACGCACACCCCCCGTTTTGCTACTTTAGCCCTAGGCGGCGGGATTTTCTTCACGTCAGCCGCAGGGGTTCTTGAAAGCGAAGGTTAGAGTTCTATGAGAGCCCAACGTGCAGGACGACGTATCGGCT # Right flank : CCGGACGGGCCGGGCGCGGCCATTGAGGCCCTCGAGGCCCCATAAAGTCCCAAGGGTCGCCCCCAGCCAGCCTTCCCACCCCCTGCCGGCGCCGGGGCCAGGTGCTGGAGTGTGAGGCGGGACACTTGTCCCTTGCCTCCGGACGTGCTAACCTAACAAGCGATCGTTAGCCATGGACCGCCGCAGCCAGATCCTTCAGATGGCCGGGCACCTCTTCAGCCAGCGGGGCTACCACGCCACCAGCATCCGGGACCTGGCCAAGGCCCTGAACCTCCAAGGGGGGAGCCTCTACGCCCACATCGCCTCCAAGGAGGAGCTCCTTTTAGAGGTGGTGCGCCAGGCGGCGGCCCGCTTCCAGGAGGTTCTAAACAGCCTGCCCCAGGCGGGGCCCAAGGAGAAGATGGTGGCCCTGGTGAAGGGCCACCTCAGGGTCATCGCCGAGGAGCTTCCCCGGGCCACGGTCTTCTTCCACGAGTGGAAGCACCTCTCCCCTCCCCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 4 1010735-1010468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010822.1 Thermus aquaticus Y51MC23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1010734 36 100.0 39 .................................... GCCGCCCAAAGAAAAGGGCCAAAGCCCGCATGTCCTCAT 1010659 36 100.0 40 .................................... TAGTGATGTGCATAGACGAGTGGGGGCTCATAGCTGAGTT 1010583 36 97.2 44 ............C....................... TTCAGGGGCACCCCCTGGACCAGCGCCACGCCGTTGTTCACCAG 1010503 36 91.7 0 ............C...................AT.. | ========== ====== ====== ====== ==================================== ============================================ ================== 4 36 97.2 41 GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Left flank : TAGGCCTTTTCAGGGCAACGCCTTGAGAAGCTTCCGGGGAGCGGGCCTCCGCTCCCCGCTTTCCCTTGGCCGGGAAAGCCCCGGGTCCACCTCCTGGGGTTGGCCCAAGGGCGTACCCCTTCCGCCTCTGGCGGCAGAGGGGCTTTTGCTACACTTATCAGCAAAATTGCGATGCAACTGGCCCTTCTTGCGCTTTGAAAATCAAAGCCCCCTTTCCAGGCCGCCTTTTGGCCCATATTTTGACCTGGTCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGAGGACCTTGAAAGCCAGTTCTTCCCTTGGGGATGGGCAATATGCGTTTTCCCCTTCTCATCGGCCCTCTCTCCTGCGTGTGTTCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCCCATGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCCGGCAGCGTCGTCCAGAACGGCGTTCTTAGGGGGGTAGA # Right flank : TGTCTTGCCTGTCAAGCCACCCCTTGGAGGGACTGGCCTGCGTAGTACTCCCTTAGCCTCCCCATCATCCGCCTAAGAAGCTTGTGGGCCACGGCCACTAGGGCCTGCTTTTTGCGCTTCCCCCGGGAGAGCAGGCGATGGTAGAAGGCCCCCATCTCCGGGTCGTGCCGCACCACCACCAAGGCCCCCATGAAAAGCTTCCTTCGCAAAAGGGGAGGCCCCTTCCGGGAGAGCCGGCTTCTCTCCACGCTCTTCCCCGACTCCTCCCGCTCGGGGATCAGGCCCGCGTAGGAGGCCGCCGCCTTGGCCCGGCCCCAAAGGTGCGGGGGCAGGAGGGCCAGCACCACCGCCGCCACCTGGGGCCCCACCCCGGGCAGGCCCATCAAGACCTCGGCCTCGGGGAGGGCGGCGAGGAGGGCCTGGATTCTGGCCTCCACCTCCCCCAGGAGCCCCTCCACGCAGGCCAGCTCCCTCTGGAGGAGAACGAGGATCTCCTCGCT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 1233865-1232917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010822.1 Thermus aquaticus Y51MC23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================== ================== 1233864 28 100.0 47 ............................ TCTCCCTAAGGGCCTCGGCAACAATAGCCGCGGCCTCAGGTTGCAAG 1233789 28 100.0 45 ............................ TGTAGTGTACACTGGCCGGATTGAAAACGGCCAGTGGGTTGCAAG 1233716 28 100.0 48 ............................ TCCATGTGCTCCAGGACGGCGGAGGCCCCGAAGGCCCGGAGTTGCAAG 1233640 28 100.0 46 ............................ TAGCTGAGGGCGGTAATGGTGCCCTCGCCATCGCCGGGGTTGCGAA 1233566 28 100.0 50 ............................ ACGGGGTTTCGCGCGGGATTCCTGTCGTCATCACGAAGCGAGGTTGCAAA 1233488 28 100.0 58 ............................ CCGAGGTAAAACACCTCCACGACCACCCTGTGGCGGCCACTCTGGATGTAGTTGCAAA 1233402 28 92.9 50 ....A........C.............. TCTGCTTCAGAAAGGCCTCGGGGTCAAGGTAGCCCTCGAGGAGTTGCAAA 1233324 28 96.4 48 ....A....................... GCGTACTTCCAGGCCTGTCCCCCAAGCACCCCGGCGTTCAGTTGCAAG 1233248 28 100.0 50 ............................ TCTGAAGTGTCAGAGGCGTAAACAAGAATGTCAAATACCTCCGTTGCAAG 1233170 28 100.0 48 ............................ GTGAAGACCCGGTACTGAGCCACGATTTCCTTCTTCTTGCGTTGCAAG 1233094 28 100.0 45 ............................ GCGAGGGCAAACCTCACTGCTTGCGTAACGGCTCCAGGTTGCAAA 1233021 28 96.4 49 .............C.............. AGGATGTAGCTGGTCCATGGACCGGGCACCTTGACCGCCAGGTTGCAAG 1232944 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ========================================================== ================== 13 28 98.6 49 CCACTTAGCCCCGTAAGGGGATTGCGAC # Left flank : CACCCTGAACCGGGCCGTGTGAAGTTTGCACACGCCGTGGTCCTCTCCGCCTTCCGGAGGGGGCACCTCACCCCGGCCCGCGCCGAAGCCAGGGCAAAGAAGCGTGCACGCCGCAATACTTACGCATCTACTAGTTACTTCCACCATCTGCCTTGTTGCGGGGCGAAGCCATCTCTTCACGCTTCCGTAGCGTATAGCGACCTTCTTTGCGCCTCTCCCGACACACTTTTGTACTTGGTATACCGTTGCCCGAAAGTGCTATAATGTCCCTGTCCCGGGCATCCGGGAGGGGACCTTGAAAACCAGTTTCTTCCCACGGGGACGGCGATATTCGCCTATGCATTCTCCCTTGACCCTTCTTCCGAAGTCTTCCCATCGGCCCAAATCCCGCAAAACGCCCACCCTTTGGCCGATGCATACTCCAAGCTTCATCTTTCTCACAAACACCCCCTCCGGCGGCGCTGTCCAGAAGGACATTCTTAGGGGGGTAAAGTTGCAAG # Right flank : CCCTCTCTTGCCCGGTGGGGCGGGGGAGGGGTTTCGCTTTTGGGGTGGGTTGGTTTCTTGACCGGGTACAGGAAGGTGGGTAGAATGCCCACCGGAGGTGAAAGAATGAAGCGGCTTATCGCTTTGGTGGTGGCGCTGGCCCTGGCGTTGGCCCAGGGGTTGGAGGCCTTCTGGAAGGCGGTGGAGGTGCCGGGTGGGGTGTGCTCGGACGGCTCCCCCTACCGCTTTTACGTGAGCCCCGGGGACCCCAAGAAGGTGGTCCTGGACTTCCAGGGTGGCGGGGCCTGCTGGGACGCCGCCACCTGCGGCCCGCAAAGCCAGACCTACCGCAAGCGGGTGGACGTGCAGGAGCTCCTCCTGGCCCAGGGCATTTACAACCGCATGAGCGTGGCCAACCCCTTCTTCGGCTGGACCCACGTCTTCGTGCCCTACTGCACGGGGGACCTGCACGTGGGCCGGGCCACGGTGGACTACGGCGGCTTCAAGGTCCACCACCAGGG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCACTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 6 1732522-1731966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010822.1 Thermus aquaticus Y51MC23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1732521 36 100.0 40 .................................... CCCACCAGTACCGCCTGATTAAGTCTCTAAGGTTCACTTT 1732445 36 100.0 39 .................................... TCCAGGTGGAGTCCACCTCTCCATCGGGCTTGAAGCGAA 1732370 36 100.0 38 .................................... CCGGCGGCAGGCCACGGGATACCGCGCAGGGGAGGGGG 1732296 36 100.0 37 .................................... CCGCATAGTTAGACCAGGTAAACTCCACCTTTGACTT 1732223 36 100.0 38 .................................... GCCCACTCTGGACCGCCTACCGGCTTGTACCCCTCACG 1732149 36 97.2 37 .................................A.. ACCACAGCGGGTGCAAGTTTGGTAGCAACGCTCGCAA 1732076 36 100.0 39 .................................... AACCCTTTTTTAAGCAGTCCCCAATGCCTAGCGTGTTTA 1732001 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 99.0 38 GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Left flank : GCAGGAACCTGACCAGCCTTCAACAAGCCCTCTGTTTAACCCAATCAAGGGAAGCCAGGTGAAGCCGTCTACGAAGGGGCTAAAGGCATGCCCTTCTGGTACGGGGACGCTACACGTCCTCTTACCTTTGGCGATAGAGCGGACCTTTACTATACTTGTCAGCAAAATTGCGATGCAACTGGTCTTTCTTACGCTTTGAAAATCAAAGTCTCCTTTCCAGGCCGCCTTTTGGCCAATATTTTGACTTGGTCCAACGTTGCGGTGTGTGCTATACTCCCCCTGACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTCTTCCCTTGGCGATGGGCAATATGCGTTTTCCCCTTCTCATCGGCCCTCTCTCCTGCGTGTGTTCATCGGCACAAACCCCCGAAAACCCCCGTTATTCGCCCTATGCATATTCCAATCTTCATCTTTCTCACAAACCCCCTTCTGGCAGTGCCGTCCAGAACGGCGTTCTTAGGGGGGTAGA # Right flank : TGTCTTGCCTGTTAAGCCTCCCCCTGGAGGGACTGGCTGGCGCAGTACTCCCGCAATCTCCCCTTCATCCGCCTGCGGTTCATTTGGAGTAGGGGCTCCAAAGCGGAGCTTGCGGGCAGGGCCTGTTCGTTGCGCTTTCCCCGGGACAATACTACGCCTACGACCGAGCCGGGGGAGAGAAACCGGAAAACCCCTTCGCGTGATAGCCTAGCCCTGTGGACGGCAACGCCCCTGACCCCAAGTACTGGGAAAAGATGCGCCTGGTGGCCGAGGTGCTGAAGGCGGTGGAGGGCCCCATCTACATCGCCACCCACGTGGACCCCGATGGGGACGCCATCGGGAGTTCTTTAGGGCTTTACCGGGCCCTCAAAGCCCTGGGCAAGGACGCCCGCTGGGTGGCGGAGCCTCCCCGCTTCCTCCGCTTTCTGCCCAAGGAGGACGAGTACTCCGACCCCGTGGAGAAGCTTCCTCCCGGGGCCACCCTGGTGGCGCTGGACAGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 7 1743246-1742839 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010822.1 Thermus aquaticus Y51MC23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1743245 36 100.0 38 .................................... ACCTGGCTACTTCCGAGTAGGCGGAGGAAAAGCACCCC 1743171 36 100.0 36 .................................... CCCACCTTGGGCAGAAGGGGTGCTGACGGACTTCCT 1743099 36 100.0 39 .................................... CATGAGCCTTTTCCACATGGGGTGATTGGTAGAGATTAA 1743024 36 100.0 38 .................................... GTGAGCACCTTGGCGGCGGTTTCCGTGGCGCTCATCAT 1742950 36 100.0 40 .................................... AGCCAGCGGTCAAACTCCTCCTGGGCCCTCTCGGGCAGGA 1742874 36 91.7 0 ............A...................AT.. | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 98.6 38 GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Left flank : CTAACATCGCCCTACCCCCAGCGGGCGCATCGCGGTCTCGTGACGGGGGGCAGGTTCAGCACCAGGGGCCAGTCGTCGGGCCAGGCCGGGTGGCTTGACCGGCAAAGAAGCGTGCACGCCGCAACACTTACGCATCCACCAGTTACTTCCACCATCTGCCTTGTTGCGGGGCGAAGGCATCTCTTCACGCTTCCGTAGCGTATAGTAACCTTCTTTACGCCTCTCCCGACACACTTTTGTACTTGGTACACCGTTGCCCGAAAGTGCTATAATGTCTTCGTCCCGGGTATCCGGGAGGGGACCTTGAAAACCAGTTTCTTCCCACGGGGACGGCGATATTCGCCTATGCATTCTTCCCTGACCCTTCTTCCGAAGTCTTCCCATCGGCCTAAACCCCGCAAAACGCCCACCCCTTGGCCGATGCATATTCCAAGCTTCATCTTTCTCACAAACACCCCCTCCGGCGGTGCTGTCCAGAAGGGCATTCTTAGGGGGGTAGA # Right flank : TGTCTTGCCTGTCAAACCTCCCCCTGGAGGGACTGGCTGGCGCAGTACTCCCGCAATCTCCTCTTCATCCGCCTGCGGTTTATTTGGGGTAGGGGCTCCAAAGCGGAGCTTGTGGGCGGGGCCTGCTTGCTGCGCTTTTCCCGGGACAATGGGCGCTCGTAGGAAGTTCCTTCCTTGTTAGGTCACCCTCCGGCCAGAAGCGGAAGCCCAGGGCCTCTGCGAAGGGGAGAGCAAGGCCCTCCTCATCTTGGTCTTAGTTCAAGCCGTTTAACCCCGTAAGAAGGTTGCGGGTGGCGGGCAGGTATACTTCGCTTCCGAAGCGGCTATGGTGCGAGACCCGGTTTACCTTTCCCTTTTGGGCAACGACCCGGCCCCCGCCTACCTGGGGCTGAAGATGGTGGAGCAAAGGGCAAGAGGGGTGGCGAGGGCCATTTTCTACACCCTCCGTGTGTGGAACGAGGCCTATAAGGCCAAGCGCTGCGCCCTTTTCGCTCTCCTGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCACTTAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //