Array 1 108386-105425 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBP010000010.1 Salmonella enterica strain L3-6 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108385 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108324 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108263 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108202 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108141 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108080 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108019 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 107958 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 107897 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107836 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107775 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107714 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107653 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107592 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107531 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107470 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107409 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107348 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107287 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107226 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107165 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107104 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107042 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 106981 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 106920 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106859 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106798 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106737 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106676 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106615 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106554 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106493 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106432 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106371 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106310 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106249 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106188 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106126 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106065 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106004 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 105943 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105882 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105821 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105760 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105699 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105638 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105576 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105515 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105454 29 96.6 0 ............T................ | A [105427] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126018-124645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBP010000010.1 Salmonella enterica strain L3-6 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126017 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 125956 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 125895 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125834 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125773 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125712 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125650 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125589 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125528 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125467 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125406 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125345 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125284 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125222 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125161 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125100 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125038 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 124977 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 124916 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124855 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124794 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124733 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124672 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //