Array 1 139-1427 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXI01000041.1 Pseudomonas aeruginosa strain ENV-552 PA4_E3_NODE_28_length_86616_cov_33.1891_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139 28 100.0 32 ............................ GCGCACCCTGGGCACTTGTCCTCATCCGGTTC 199 28 100.0 32 ............................ AGGTGGTTGGATAGGTTCATGTCGGCCAGCAT 259 28 100.0 32 ............................ TCCGGCGGATCATGGCCGAGCGCAAGCTTCGC 319 28 100.0 32 ............................ TCGAAATGATGGTTCCCTACGAGGACCTGCAG 379 28 100.0 32 ............................ CCTTTGTGCCGTGCCATGACCATGACCAGGCC 439 28 100.0 32 ............................ AGCAGAACAAGGAGCATTCGATAAGCCACACG 499 28 100.0 32 ............................ GGGCAGATTCACGTCGTGTGCCCCTTCACATG 559 28 100.0 33 ............................ CTCAAGCTGGGTCTGCCCAACCGTGGCGGAATA 620 28 100.0 32 ............................ TTTCGCGCTGCCTGCTCAGCACGGAGCATGTC 680 28 100.0 32 ............................ TCGTTGACCCGCTGGCGCCAGAGCATTTCGCG 740 28 100.0 32 ............................ TGGAGCAGGTCAGCACCGCGCTGGCCGCGCAA 800 28 100.0 32 ............................ ATGATCGGATTGCCCTTCTCGTCGCGCTCGAT 860 28 100.0 32 ............................ ATCTCAAAATCGTCGCAGCCAGTTAGCAAACT 920 28 100.0 32 ............................ AAGCACTCTGGTATGCGCTGGTTGCAAAGTAC 980 28 100.0 32 ............................ ATGTCTCACCTCGCGTTCGCGTGCATGCGGCT 1040 28 100.0 32 ............................ GTCTACGGATTCGCCGGATTCGTGCCTGAGTG 1100 28 100.0 32 ............................ ATCGCCGTCAGAGCCGCCACCGCTGCCGCCAG 1160 28 100.0 32 ............................ ATTATGCGAGGCCACTTTTGGTACCGGCAGAG 1220 28 100.0 32 ............................ TATCCCTCCCTCTTTTGGCATGTGTCAAAACA 1280 28 100.0 32 ............................ CTCCCCAGCGCAGGCCGAGCAGGCAGAGGCGG 1340 28 100.0 32 ............................ AAGCAGCGCGAAGCGTTTTTGAAGCACCTGGG 1400 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGGTGCCGGGCCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCCTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38424-39110 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXI01000073.1 Pseudomonas aeruginosa strain ENV-552 PA4_E3_NODE_42_length_48882_cov_31.3628_ID_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38424 28 100.0 32 ............................ ACCTGGCAGACGTTCGTTCACCTCTGGCGTAG 38484 28 100.0 32 ............................ ACCGGGCCGACGACACCACGCCGTTAGGAGAC 38544 28 100.0 32 ............................ TCGGCGTCACGCTTGAAGATGCCCCAGTTCTT 38604 28 100.0 32 ............................ ATCGGAAAAGCAGGAACCAGCGGTACGCTGCC 38664 28 100.0 32 ............................ AGACACCGCCGGCGGTGCCGAGGCCGACCAGT 38724 28 100.0 32 ............................ TCTAGGGCGCCACGGAAGCCCACATAACCCAG 38784 28 100.0 32 ............................ GGATGCAGCCTCGACCTGCTTGGCGGCCCCCT 38844 28 100.0 32 ............................ TTGGTGGCGTCGGCGTCGATGTGCAGGCCCGG 38904 28 100.0 32 ............................ ATGCCGAGTACGTCGAGCAGCGGAGACGCATG 38964 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 39024 27 89.3 32 A....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 39083 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGGTGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48745-47635 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXI01000073.1 Pseudomonas aeruginosa strain ENV-552 PA4_E3_NODE_42_length_48882_cov_31.3628_ID_83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48744 28 100.0 32 ............................ TTGGCGCGGATCCAGTCCGCCTCGTTGTCGAA 48684 28 100.0 32 ............................ TACAGCATCAGCGAAACCGTCTGTGAGGATTG 48624 28 100.0 32 ............................ AACGACGAGGCGCGTCCCTACGGCGCCATAGT 48564 28 100.0 32 ............................ AAGATCATGGTGCGGCGCGCTGCTTTTTTTCC 48504 28 100.0 32 ............................ AACTCGTGCTTGATCGCCTTCTGCCTGGCCTC 48444 28 100.0 32 ............................ GGCACGCGAACGCCTGGTGGCCTTGAGTAGGT 48384 28 100.0 32 ............................ ACCGGATAGTTCGCGCCGTTCTGTGCGTTCGC 48324 28 100.0 32 ............................ TTGGTGGCCTCCGCTGTCTGCCTCATGAAGCC 48264 28 100.0 32 ............................ TCGATCTCGCGCAGTTCCTTGCGGATGTGGTC 48204 28 100.0 33 ............................ TGTTCTGGGGTTAGGCTGCCGGCGATCATTTCT 48143 28 100.0 32 ............................ AGCACGGCATCAACTTCAGCCTGGCGATCATT 48083 28 100.0 32 ............................ TTGCCGAACGGGTTGTTCTTCACGAACGCGCA 48023 28 100.0 32 ............................ TGGGAGGGATGCCACTGTGACCGTCGCCCTAC 47963 28 100.0 33 ............................ TGGTCGAGCCGACCGATGTAGCGCGCATCTGTT 47902 28 100.0 32 ............................ ATCAGCACCCGGCGGCATGGCCCGCGCCGTGC 47842 28 100.0 32 ............................ ACACCAGCAGGGCGACGGTCACAGCGGCATCC 47782 28 100.0 32 ............................ CACCGCCCCGCCTCTACTTACAAACCGCCTTA 47722 28 100.0 32 ............................ TTTTCCGTAGCCTGCCCGGACATTGCCCTGGC 47662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : AACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //