Array 1 249229-253095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIMIP010000005.1 Klebsiella pneumoniae strain WHC31 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249229 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249288 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249349 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249410 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249471 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249532 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249593 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249654 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249715 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249776 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249837 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249898 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249959 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 250020 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 250081 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250142 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250203 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250264 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250325 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250386 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250447 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250508 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250569 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250630 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250691 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250752 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250813 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250874 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250935 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250996 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 251057 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251118 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251179 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251240 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251301 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251362 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251423 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251484 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251545 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251606 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251667 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251728 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251789 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251850 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251911 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 251972 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 252033 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252094 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252155 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252216 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252277 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252338 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252399 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252460 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252521 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252582 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252643 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252704 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252765 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252826 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252887 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 252948 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 253009 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253067 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 64 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //