Array 1 1965-1601 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGX01000013.1 Ruminiclostridium hungatei strain DSM 14427 CLHUN_contig000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1964 32 100.0 36 ................................ AAGTTCTGTCATTTTTAACCTCACACAGTACAAATT 1896 32 100.0 34 ................................ TGAAAAGGTTATTTTTTAGTTTTAGGTTATATCC 1830 32 100.0 34 ................................ TGGACCACACAATGCATACGGGCCAGGGTCGTGG 1764 32 100.0 33 ................................ CAAGGAGGGGCTTCACCTTCGGCGTCAACATCC 1699 32 100.0 35 ................................ ACAATAAACATAATCCATGAAACAAAATCTATTCT 1632 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 ATTGCAACTGGTGCATGTGTACAAGATGTGAG # Left flank : GTTTTTAAAGAACTGGACATATTATGATTTGCAACAAAAAGTCAAGTATAAAGCCGAATTGGAAGGGATTGAAGTAAAACTGATTGACCCGCAATACACAAGCCAAAGATGTTGTAAATGTGGATATATACACCGAGATAACAGACCAGAACAAGCAAAATTTAAATGTATTGATTGTGGCTTTGAGGTGAATGCAGATTATAATGCATCATTAAATATAGCAACACCGGACATTGATAAAATAATATTAGAATTTTTAAAGTGCGAAACATAAGTAAACAATTGGGGTGGCTCAACACCCTTAAATCGAGAAGTGGCATAAATCCATACTTGTGTGGTTGCAAAACACTCGATAAGGTAAAAACGGTTAGCACCGTTTGAAATTCCGAGTATAAAAGACCGCTCGGACGTTTTATACATATACAAGAATTGCGATAAAGTATAGACTCGCACATTAAGTAGCTAAAGTGAGCATAACGGAAGTGTTTTAAATATGTGCT # Right flank : CATTTTTTTAAAACCTCCTTTTTTACATATGTGAATTGGAAGCACTTGTGCATCTATCTGGTATGGTTTCCGTGCTAAAAGGCTGAATTCTATTACAATTCATATTTATAACCAAGTAATAATATCTAGTTTTAATTTATTCCAAAATGTGTTATACTAATCATAAAAGTTTTATATGCAATTGGTTTTGTGAATAATAATAACTATAATAAATAATTTCTTACCAGGAGGTTTATTATGATTGTAACTCCAAAATTCAGAGGTTTTATTTGTACGACCTCTCATCCTGCAGGCTGCGAATATAGCGTAAGGCAGCAGGTTGAATACGTTAAAAAGCAAAAGAGAATATCCGGTGCCAAAAAGGTGCTTGTCATAGGTGCTTCCACAGGGTATGGACTTTCCTCCAGAATAGCAGCGGCTTTTGGCTGCGGTGCAGCTACAATAGGGCTGTTTTTTGAAAGACAGGCTTCGGGAAATAAAACAGCTTCCGCAGGCTGGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAACTGGTGCATGTGTACAAGATGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 53201-52973 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGX01000008.1 Ruminiclostridium hungatei strain DSM 14427 CLHUN_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 53200 32 100.0 33 ................................ GTCTGCTCTTATGCCGACAAAACAAGCAGTCAA 53135 32 100.0 34 ................................ TAGTCTCTTTTTCAATTACAAAATAATAAGGAGT 53069 32 100.0 33 ................................ TGTGCTACATTGTTTATCAGTTGAAAATCGTGC 53004 32 96.9 0 ......................A......... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 99.2 34 GTCGCTCCTTGCGTAGGAGCGTGGATTGAAAT # Left flank : GATGAATATCCTCCATTTTTGTGGAAGTAGGTGATTTGATGCTGGTGCTTATTACATATGATGTAAATACGGAGACCGAAGCCGGAAGAAAAAGGCTGCGGCATGTTGCAAAACAATGCGTAAATTATGGACAACGAGTACAGAACTCCGTATTTGAATGTGTTATGGATGCAGCAAAGTGCAGGGAAGTTAAAAATAAGCTGGAAAAAATTATTGACAAGGACAAGGACAGCCTCAGATTTTATTACCTTGGAAACAACTATCAGAATAAGGTTGAGCATATAGGTGCTAAGGAATCCTTTGATATTGAAGGTACTCTGATAATTTAGTGCGAATGTGAAGTGAACATTAAAAGCCAGGTACATTCGCACCAGATTTTGGACATACTTTTATGAAAACATATAATAATTTATATTAGTAGTATGCAAAAGCAATTGAAAACCGCTTTGTTATTATATACTTTATACAATAAAGATAAGCGGTTTTTGTTTACTTTTGCT # Right flank : AGTACTAACAAAGGCTGAATTTTGTTGACATGGAAATTTTTCGTTTGCCAAGTCGCATTTTGCATAGCAGATTCAGTAGGCCATGGTATTAAATCTGATAGCACTAAAGAAGTAGAGATTTATTCTATTGACTATAGTAATCAATGAATATAGAATAATATTGTAAAATTATGTAATTTGGAGGAGTCTCATGAAGGTATTCATCAGTTGGTCAGGGGAAAGAAGTAGGGAGGTCGGAGAATTACTTGATGAATGGCTGCAATGTGTATTACAAGCAATAGAGCCATGGATGTCAAGTAAAGATATTGACCGGGGCTCCCTATGGTTTTCTGAAATAACAGACCAATTGAAGGATACTACTATCGGAATAATATGCCTTACGCAGGAAAATATAAATAAGCCATGGATTTTGTTTGAAGCCGGTGCTTTGGCAAAAGGATTGACATCCAATAGGGTATGTACTTTACTTATTGACTTGCAAGCCACAGATATAATTGATC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTGCGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 82359-82064 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGX01000008.1 Ruminiclostridium hungatei strain DSM 14427 CLHUN_contig000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 82358 32 100.0 33 ................................ ACTGAGATCATTTGGTATCAAACCTGGGTAATC 82293 32 100.0 34 ................................ ATGCCGTAAACGATATAAAATTACCAATTAAATT 82227 32 100.0 33 ................................ GTGGCAATAACTCCTGATATCAATGTATTGCTA 82162 32 100.0 34 ................................ TGTGATGGAGAATGGGGAGTAACAGGGCTGCTTG 82096 32 96.9 0 ...................T............ | T [82069] ========== ====== ====== ====== ================================ ================================== ================== 5 32 99.4 34 GTCGCTCCTTGCGTAGGAGCGTGGATTGAAAT # Left flank : TTTGTGGGTATGGTGCTGGAATATGACAAAGAAACGGGAATCGCCAAAATCGAGCAGAGAAACAGGATGATAGTGGGCGATGAAATCGAAGTTGTGATTCCAAGGAAGGATTACTTCATACAGACTATAGAGGCTATGAAAAATGAGGAGGGCGAAAGCATCAGAACCGCTCCCCATGCGCAGATGACAGTATACATGCCTATGAAGCAGGAGGTTCTGCCTTTTACCATATTGAGAAAGAAATAGAGCTGATGATATTTTTAGCTCTTGGGCTGTTCATCAGCTTGTTTTATCAGGATAGAACGATTGCAGCTCAGGATCAAATAAGGTGCGAATGTGAAGCGGACATTAAAAGTCAGGTACATTCGCACCTTATTTTTGACGAAATTTCAAGGGGTTTTGTAATTTATTTGATGGACAGCAATAAAATGTATTGTGTCATTTTGAAAATATTGTATAATTTATACAATGGAAGCTTATAGTTTCTGTTTAGTTTTGCT # Right flank : ATGAAGAATTAAAGCATCCCATATTTTGGAATACTCTATGGTTCAGCTCGGCCAGCAGATGCTGTAGCAGAAACAATAAAATAAAGTGAAGTAACATGAAGGCGCTGCCAATCAACAAAAAGGCGACGCCTTTTTGTTGATTGGCACAAGAAGATTACCATTTGCCGTAATGAATTTTGTCTTCATCATACCTATTCTCGGACTCCTTTGTTTCAGCAGGATATCCAATTGATACTAAAGAGAAGGGTGTAATGTGGTCTGGAATATTTAGGACTTCCTTTATGTATGTAAGCTTGTCTTCCTCGGGATATACACCCAGCCATACACTTCCCAGACCAGAGGCATGTGCTGCAAGAATCAGATTTTCCGTTGCTGCTGCACAATCCAGTGTCCAAAAATGTTTTAAAGTTGCCACCTCGATTTCACCGCAGATAAGAATTGCCAGAGGCGCTTCTTCTAGCATTGAATAGCCCGAATTGTGTGCTGAAAGCTTATTCAAT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTGCGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //