Array 1 1559357-1557434 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046279.1 Salmonella enterica strain FDAARGOS_707 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1559356 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 1559295 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 1559234 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 1559173 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 1559112 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 1559051 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 1558990 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGGCACCAAA 1558929 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 1558868 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 1558807 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 1558746 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 1558685 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 1558624 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 1558563 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 1558501 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 1558440 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 1558379 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 1558318 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 1558257 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 1558196 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 1558135 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 1558074 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 1558013 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 1557952 29 96.6 32 ............................T GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA 1557891 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 1557830 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 1557769 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 1557707 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 1557646 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 1557585 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 1557524 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACATCTCTAAAAA 1557463 29 96.6 0 ............T................ | A [1557436] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAAGACGTTTTTTCCGCTTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGAATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGGTTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1575812-1575479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046279.1 Salmonella enterica strain FDAARGOS_707 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1575811 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 1575750 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 1575689 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 1575628 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1575567 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 1575506 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //