Array 1 94035-93090 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYU01000015.1 Escherichia coli strain MOD1-EC6105 MOD1-EC6105_15_length_119186_cov_106.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94034 29 100.0 32 ............................. AATCACTACGCTGTAATTTATTGTAGGCGACA 93973 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 93912 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 93850 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 93789 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 93728 29 100.0 32 ............................. TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 93667 29 100.0 32 ............................. CGGCCCGCGCGGCCGCAATTGAGGCCGGTTTG 93606 29 100.0 32 ............................. CCACACACATCGAGCTGGTGGGGATTAATGCT 93545 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 93484 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 93423 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93362 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93301 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93240 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93179 29 96.6 32 ....................A........ CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93118 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1572-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYU01000029.1 Escherichia coli strain MOD1-EC6105 MOD1-EC6105_29_length_54939_cov_110.931, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1571 29 100.0 32 ............................. AAATAGCGTTTGTTGTTGGAATAATGGGTTAT 1510 29 100.0 32 ............................. ATTTTTCAAAACAGATCGCTACTGCTCGTGCA 1449 29 100.0 32 ............................. GAACTCAGGCTTCAGGGCATCAGCACAATGGA 1388 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 1327 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 1266 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 1205 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 1144 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 1083 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 1022 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 961 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 900 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 839 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 778 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //