Array 1 180646-178890 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023063.1 Nitratiruptor sp. YY08-26 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 180645 30 100.0 37 .............................. GGCTCCAATCTCAACTCATATCCTCCATCAATCTTTC 180578 30 100.0 36 .............................. AAGTGTGTGGATAAAATAAAAATAGCTAGCGACATT 180512 30 100.0 37 .............................. ATAGCTTGATGGAGGGCAATAAGCCTTCAATGGACGA 180445 30 100.0 36 .............................. TGCCTGCACTCTGTCGCTGTCCTATACACACTAATG 180379 30 100.0 37 .............................. CGCTGTCTGCATCTGTATCAACTGCTTGTCCAGTAAG 180312 30 100.0 38 .............................. TACTTCTTGCCCTTGTATACTCGGGGCTTCAAAAGTGG 180244 30 100.0 36 .............................. AAGTTTTTATACATTGCGCTCAAAGTGCGGGGTATC 180178 30 100.0 36 .............................. ATTCATTTGTGCATTTTTGATTTTTTTGGGTTCAAA 180112 30 100.0 36 .............................. GAAGATGACGGCGCACCACTTGCGTCATAAAGATTA 180046 30 100.0 36 .............................. TCCATATACCTTGCGTTTTTTTTCAAAAGCTTTACA 179980 30 100.0 36 .............................. ATTCATTTGTGCATTTTTGATTTTTTTGGGTTCAAA 179914 30 100.0 36 .............................. TATTACATTGAAGATAGATAACACCGACTTGTTTTT 179848 30 100.0 36 .............................. TATTACATTGAAGATAGATAACACCGACTTGTTTTT 179782 30 100.0 37 .............................. TCTTTTCATAGAGCCTACTATCAAGCCCAACCATATC 179715 30 100.0 37 .............................. TCTTCACTAAAAGTTATCAATTTTATGTACAAATCAG 179648 30 100.0 36 .............................. AACTCTGTTGTGGCTACAAACCTTGGAATAACGAAT 179582 30 100.0 36 .............................. ACTGTACAAGGCAACCTCTTTGGGACTGGTGGACGA 179516 30 100.0 36 .............................. CATCAAATCCATCACAAAAGCGATCGGTGATGAGTT 179450 30 100.0 36 .............................. GAATCTTCTCTTATCTCATCTTTATCGCTAAAAATC 179384 30 100.0 37 .............................. CCTCTTTTGTTGTCTTTTTGGTAGCATTTTTCACATT 179317 30 100.0 36 .............................. TGCTGAAAAAGTTTCAAAAGCAAATATCACAACACA 179251 30 100.0 37 .............................. TCATTTTCAACCTCCTCAAAAAGCTCTTTGAAGCTTT 179184 30 100.0 37 .............................. AAACTATATTCAAATGTATTCCCTGCTAGATTCTCAA 179117 30 100.0 36 .............................. CCAGATAACAAATACTGAGCAAGCGCAAGCATTATT 179051 30 96.7 36 ...........A.................. CCAGATAACAAATACTGAGCAAGCGCAAGCATTATT 178985 30 100.0 36 .............................. TGCAGCTACCAGCTTTGCGATCTGTTTTCTACTCAA 178919 30 80.0 0 ..G......A....A.C..A.........A | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.1 36 GTTTGTATCGTGCCTATGAGGTATTGAAAC # Left flank : AAACCTTTCATAGCAGGATGGTGAAATGTTTATAATCTTAGTGTATGACGCCAACCAAAAAAGAGTAGCCAAACTTCATAAAACCTGCAAAAAATATCTTACTTGGGTGCAAAGAAGCGTTTTTGAGGGAGAAATAACAAAAGCAAAATATGAAAAGCTCATTTTTGAACTCAAAGAGATTATCGACGAAAATGAAGATGCGATAATCGTCTATAAATTTAGAACTAAAAAATACTATAGCCGTGATAGCTTTGGAGCCCCCATACCATCGAGTGAAGATATATTTTTCTAAGTCGATCGGTTTGTTTTTGTAATATATTTATAACAAATTTTTATATTTTTTAGCTAAAAATCCTATAAATCATCGATATTATCGGGCTCAGTCGATCTCCTATGATTTTAGACTTATTGAAGGTTGACTTGAAAATCTGCATTTTGTATAATAGCTAGAAGGCTTTAAAAGCCCATGGTTACTTGAAAACTTATTGTCATAGTTTAAG # Right flank : CCATTAGAAAGTATGCTTTACCTTTTGTGGCAATAGATAAAATGTTTAGTTAATGAAGGAACAACGAAATGAGTAGTAAAAAGAGAGCCCAACCACTTATAAAAAGATTAAAACATTTGTCGAGGACAAATTCTTATTGCAGAGCCTGTAATATTACAATGAAAGCAATACAAAGCAACCATGAGAAAACCTTTGCTGGTTCGTATCTTTACTCTACTGGGCATGAAAACCACTTTTAAATCCATCCATACCGAACTCATAACATTATCAAACCCAAAGCTCTTTGCCATTTTTCTGCCTTTGTTATAATATAGTCATGAAGAGATTCATAAAAGAGTTTATAGGTCTTTTAGATAGATCCTATTTTGCTTCGTATGGCGTAACATGGATGGCTATCTTTGTTGCTTTTTTAATATCTTACAATGCTCCATTTTTAGATACCTTCGCTGCTTCAGCTATTATTTCCTTCATCTTCGCCGTTGGCGTTACTCTTGCAGCAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTGCCTATGAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //