Array 1 428116-422410 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068102.1 Rothia aeria strain FDAARGOS_1137 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 428115 29 96.6 33 ............................A CTGAGCTTTTGAACGCGGCCCGCGCGCCATATG 428053 29 100.0 32 ............................. CGACGTGGCATGACTACAAAAAGCTACAGCAG 427992 29 100.0 32 ............................. ATTCTCTTCACCCACAATGCTCTTGAGGGTAG 427931 29 100.0 32 ............................. TCTTCGATTGTCATGTACTCGCCATTGTTTTC 427870 29 100.0 32 ............................. CTGAGTGGCAACAGACTTGGGAACAGGTCATG 427809 29 100.0 32 ............................. GCAATGGGCGAGGCAAAAAAATTTTTTTGCCT 427748 29 100.0 32 ............................. TTTCAATGAGACCGGCTTCAGCGATGATTTGG 427687 29 100.0 32 ............................. ACCTCGAAGCCATCGACTGGGAATCCATGAGC 427626 29 100.0 32 ............................. GTTTTCGGGTCACTCTCCAAAAAATTATCCGC 427565 29 100.0 32 ............................. CAATGCCGCAGCTGGTGCGGTGTGCGGCCAGG 427504 29 100.0 32 ............................. ACTTTTATCCCGGCGTGGAATTTCGCCATGAA 427443 29 100.0 32 ............................. CCTAGCGTGTCAAGTTCGTATTCGTCTTCCAG 427382 29 100.0 32 ............................. GACTACACCGCCTAACGTACCGTCTGACGGTG 427321 29 100.0 33 ............................. CCCCCTCAGCTAAGAAGCGCCTGCACCAGACAG 427259 29 100.0 32 ............................. ATGGACAAGGCCTACAACGACGGCGGTCTGGA 427198 29 100.0 32 ............................. ACGCCTGCTTTAGCCGTGGGTGTGTAGAGGGT 427137 29 100.0 32 ............................. GAGTGTTCGGAGCCATGAGAAGCTAAAATCGG 427076 29 100.0 32 ............................. CCTGCGCGGGGTGACGCCGAATGCCAGTCACG 427015 29 100.0 32 ............................. TCAAGCTTTTCGAGGTTTCTGTTGTGCCCGTG 426954 29 100.0 32 ............................. TCAAGCTTTTCGAGGTTTCTGTTGTGCCCGTG 426893 29 100.0 32 ............................. CCGATCGAGGCCGGGTAGAAATACCGCTGTCG 426832 29 100.0 32 ............................. TGCCTCTTCGTACGGCACATGGAACATTCGAC 426771 29 100.0 32 ............................. GCCGTGGATCGGTGCGTACCGTTCTGTGTTTT 426710 29 100.0 32 ............................. CCATTAGAAAGGGTACGCCCGCCCGGCGACTG 426649 29 100.0 32 ............................. GACGCGAAAGACTCACTCGTGCTGGCCTGCAG 426588 29 100.0 32 ............................. TTGACGACACCCCCTACGAACCCCAGAGCAGC 426527 29 100.0 32 ............................. ACTCCTCCATGGCCGCTAATCCCAGCGTCCTA 426466 29 100.0 32 ............................. GACTTCGTCTCTCCCTTCCTCTCCTCCGACAT 426405 29 100.0 32 ............................. GATGCCGTATTTCTGCGCCGCGACAATGAGTA 426344 29 100.0 32 ............................. GCTGATGCTGACACGGGCCTGGCAAGCCTGCG 426283 29 100.0 32 ............................. ATCCCCTACCAGATGATAACTTTATCAAGCAG 426222 29 100.0 32 ............................. GACTGGGGTACTGCGATCCGCACAATCTACAC 426161 29 100.0 32 ............................. TTCCTCTTCCGGGTCAATGAGAACATTGGTCG 426100 29 100.0 32 ............................. TTTTGGACAGTGTTCACGATTTCAGGTACTAC 426039 29 100.0 33 ............................. GGCTTCATCTACGGTCATAATGACCCCGTAGGA 425977 29 100.0 32 ............................. TACGACTCTTTTTCTTCACGACGCGCTATCCG 425916 29 100.0 32 ............................. ATTACCGGCCTCAAGCCGGTTGATACGTCCAA 425855 29 100.0 32 ............................. ATTCCGTATCGCTGAGGACGACGTAAAGAACC 425794 29 100.0 32 ............................. GCATCTACGATTTCGGCTAGGAGCCGCCCGCC 425733 29 100.0 32 ............................. GAAAAGCTTCGTCGCCCCCTTCGGCGTGCGAA 425672 29 100.0 32 ............................. GGCGGTGTGATGCGCTGGCGTGATACGGTTGT 425611 29 100.0 32 ............................. TACTATATCCCGGCTTTCCAGGCTAATATTCA 425550 29 100.0 32 ............................. CGCCTACGGCTGGGAGTTAAGCAAGATAAGTG 425489 29 100.0 32 ............................. TTCGGTGCCCTAGAAACCTCCATGAGGGTAGT 425428 29 100.0 32 ............................. GAAGGCACCCGGGAGGTTCTAGTGTGGGGCAT 425367 29 100.0 32 ............................. TGTTCGTACCGGTCGAGTGTGACAAGGCTGTT 425306 29 100.0 32 ............................. AAAACCTGCAGCCGGTGCGGCACCCCATACGA 425245 29 100.0 32 ............................. GGGTGAATCTCAATCTCGCCGTTCTCACCGGT 425184 29 100.0 33 ............................. TGCCCGTGCCGGTACGGTGCGAGCGCTTTCGCG 425122 29 100.0 32 ............................. GGCGGCGGTGCGGGTGTTATAAGCGCCGCGGC 425061 29 100.0 32 ............................. GTCGGGAACGGTATGCCTTCGCCCGTGGGGAC 425000 29 100.0 32 ............................. ACGCTCGGGCCTGTACTACGCAAAATCGAAGA 424939 29 100.0 32 ............................. ACATAACCGACTCAGCACCTATGCCGCAGTGC 424878 29 100.0 32 ............................. CACCCCCGCCAAATCCCAGAAAGTCGTACAGC 424817 29 100.0 32 ............................. CAATCATCTAGCGAGGCACTGGGGCTGGGCAA 424756 29 100.0 32 ............................. ATAGCACAGACAGCACATTATCTACATTATGG 424695 29 100.0 32 ............................. GGCTTCCGTCCGGGCACCATCCTGGTATCCCC 424634 29 100.0 32 ............................. TGCGAGATTCTGGAGTTCTTCTTCACGCGCAG 424573 29 100.0 32 ............................. AAACTTATCGCCGACTGGGAACTCACCGATGA 424512 29 100.0 32 ............................. TCGAAATAACCGCCCAAGGTTATAGTGCGGCC 424451 29 93.1 32 ..........................T.A TCTGTAATGACGTCATAAAAAACCCGCAGGCC 424390 29 100.0 32 ............................. TAGCGCCCACTTTGTGGTGGAAGCTGGTAAGT 424329 29 100.0 32 ............................. CGGGGCAGCGGCAGCGAAACGGTTATCGTGTA 424268 29 100.0 32 ............................. GATGGCACCGGGGAATTTACCTGTGTAATCCC 424207 29 100.0 32 ............................. GGCGGGGCCGACGGCACTATTATCACCGGCTG 424146 29 100.0 32 ............................. AGAACAGATGATCAGCGGTTGTTCGTTTGCGT 424085 29 100.0 32 ............................. AGCACCACCCTCGACCTCGAATCAATCGGGAT 424024 29 100.0 32 ............................. CACGCATCAGATTTCACCAAGCCCCACACGGG 423963 29 100.0 32 ............................. TTCAACGGCTTCGACGATTTCGACACCGAAGA 423902 29 100.0 32 ............................. CATGAGAATGCGCTCGCTCGCATTAAGTGGGT 423841 29 100.0 32 ............................. TCATGCCGTGGGTGCAGAAAGGCGACCAGGCG 423780 29 100.0 32 ............................. CCGATAGTGCCGCCCGCGACATGCACCTGGTT 423719 29 100.0 32 ............................. TCCCCAGCTAGGCACGCTCGCCGTTCTACGGC 423658 29 100.0 32 ............................. GATACTTTCCCACTCATACACGCGCTCCTTCC 423597 29 100.0 32 ............................. TCCAAAACCTAGCACGCGATTCAGCGAAAACC 423536 29 100.0 32 ............................. TGACGGGTAGGGTTCGGGTTGTGGCGCTCTCT 423475 29 100.0 32 ............................. CTCGACATCATCTTCCTGGCCCTCACCCTCTG 423414 29 100.0 32 ............................. GAGTTCCCGAAGCTCTGGTTCATAGCGGCCTC 423353 29 100.0 32 ............................. AGCGAGACGACTACATCCAGGCCCGCGACCGT 423292 29 100.0 32 ............................. TCGCCCGGCTTCGCGTCCTTCTTCACCGTACC 423231 29 100.0 32 ............................. TGACGTAGCAGCTCAAGATTCTTACTCATGTT 423170 29 100.0 32 ............................. GGCATCTGCTACAGGGATCTTAAGCCGGAGAA 423109 29 100.0 32 ............................. GCGATGCCGCGCTTATGTAGTTCCCAGCAGAA 423048 29 100.0 32 ............................. GGCCAGCAGGGCAAGAATGTCACAGGCATGAT 422987 29 100.0 32 ............................. GACGCGATGGTGAAAATCGCAGGCGCCGTATC 422926 29 100.0 32 ............................. CACTCTGCCACTCAGTGGCACAGGCTTACCAT 422865 29 100.0 32 ............................. GAGCCTTTGGAGCCAACGATGTTGTTCACCAT 422804 29 100.0 32 ............................. CAGAGCATCGCAATCCGCAGGGGCCTGTAGGT 422743 29 96.6 32 .........................A... TTTGGTGGGGAACCTGCAGCGCGGCGGGGAAA 422682 29 100.0 32 ............................. TGGCATGCGAACACTGCGAAGGTTGCTATTAG 422621 29 89.7 32 ..........................GAA TAATCCCCACGGACCATTCCGACCGTACAGAG 422560 29 100.0 31 ............................. GGCGATTTCAAGACCGTGCGGAGGGCGGCGA 422500 29 86.2 31 ...G.....A..C...........G.... GCAGAACAGTCGCAACCGCACGGAAATAATC T [422473] 422439 29 75.9 0 ..T..T...A....T....A.....A..G | A [422426] ========== ====== ====== ====== ============================= ================================= ================== 94 29 99.3 32 GTGTTCCCCGCATACGTGGGGATGAGCCC # Left flank : GGAATGAACGCGGTGGGGATCAAAAAAGCGGACATAATTACAGTGATGATGAGGGGGAACTATGATTGTGGTTGTCCTTTCAGCTTGCCCTGTTGGCTTACGCGGGGATTTAACACGCTGGCTTCTTGAAATTAGTGCCGGGGTATTCGTAGGAAAGGTGAGCGCCCGCGTGCGTGAGCACCTGTGGAACCGTATTACTACAACGTGTAGTGATGGTAGCGCGCTTATGGTGTATTCGGCTGATAATGAGCAGCGTCTTGAGTTTAAAGTGCACCGTCATCCGTGGGAGCCTGTCGACTTTGAAGGGGTAAAACTTATGATGCGCCCGTCTGCACCGAAAGAGGACCTTGGGCCACGAAAAGGGTGGAGCAAAGCTAGCAGGTATAGGCGTGCTTCCCGGCGGCGATAAGCTCGAAAATCGTGTAGGGTTAATACTGGCTTTGGGCTCCAAACTAATTCTAAAACTTGGTGTGTGGGGATAAAACCCCATGTCAGCAAGT # Right flank : ACGTTTACTAGGGTATGTACCCTGCGGTTTTTGCGTTCCCCACATATAGACAGTCCGAGCGACTGCTGGCTGGGTATGATGTAGCTCCTCGTATTTTTCTATTCCTTACCTCACTGGTTTTATTAAAATATTTTGCAGATTCCGCCCTCAGCATGTGCTGTGCACCTGCGGGGAGGGGGGTCTATACTCTACAGTTAATAGAGAAGGCTCCTGATCGTTCCCTGCACCCGTAGGGTCTGCTAGAAAACGGCTTGCCTGCCCGAAATTTTTTTGGGTGGGTTGGCCGCTTTCTTTTATTTAATTTTCTTTTGCTGTGTTTTCTAACCGTCAGCTTCGCGTCTACTGTTTTTTCATGGGTTGCGGGGATAAAAGTAATTTTTTGTGTATTTTCGGTATTCGGTTTGTAAAACCCTGGGAGTTCGCTAAAAATTATGGGTAGAGCATTATTGAGGATGCTTTTGGATGCGTGCCCTGTTTCTTCCGGTTAAGAGTGGTCTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1255012-1254495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068102.1 Rothia aeria strain FDAARGOS_1137 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1255011 29 100.0 32 ............................. ATAAAGCCCGCTTGGGATTTGGCGCTCAATGC 1254950 29 100.0 32 ............................. TCATCAACGGCCAGCAACCAGGGCGCTTCGGA 1254889 29 100.0 32 ............................. TAGAGGCTAAGGTTCCTGGGGGGCCGGGCGGC 1254828 29 100.0 32 ............................. GGTCGCCGCTGCCGCCAAAACTATAGCAATTT 1254767 29 100.0 32 ............................. TTCCAGACCGCAGGCACCAACTACGAGGCTGC 1254706 29 100.0 32 ............................. CCTCTCATCAGTGACCATCTCAGGAATTTTGA 1254645 29 100.0 32 ............................. GAATTCACGGCCTGCTTTCCACAGGTCAGAGT 1254584 29 100.0 32 ............................. ATCTACGTTATCCGCGGAACACGTCAGCAACG 1254523 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTCTGCCCCGCGTGTGCATGGGTGGTTCC # Left flank : GGGGAAGAATGTTGCCCAAAAGTCTGGTTTGAACCGGGTAGTTTTGGATGCGGCATTCGGCGTGTTCCGTAACCAGTTGGAGTATAAGGCTGTCTGGTATGGTTCTGCGTTTGAGAAGGTTAACCGTTATTTTGCTTCGTCGCAGACGTGTTCGGAGTGCGGGAGGAAAGCGAAAACCAAGCTGACTCTGCGCGACCGTGTCTTCGACTGTGTGTACTGTGGGAATATGATGGATCGTGATTTTAATGCGGCCGTCAATATTTGCCGTGAGGCGCAGAGGCTTTTTGACGAAAAACTCGCCTCAGAAGATGGGGAGAGTCTAAACGGACGTGGAAGTCGAGGCGCTCTTCGGGGTGCTAAGACTGTAGAAGCGTCAAGACCACCTGCGAGTCATCGTAGAGGGTCACCGTAGATGAGTAATCGTCTACCCATCCATTGCATTATGCACGCAACTGAATAGAGTTTTGCAGACATGCGGACGTTATACCTAGTCAGCAAGC # Right flank : AAGCCGCACGATCATCCGGGCGGTTTCGCGTTTGTCCTTCGACATCCGACCCTCACCCCCCTTCCCGCTATAAACCCCTCACGCGACTAAACAATAGGAACGTGAGATGCGGGGGTATTTATGGTGTACAGCGGCTAAGGGTGCAGGTGTGCGGGCAGCTCACGAACGTAACAACCCGCGCATCCAGGCGATGCGCCTAATCTTCTCCCTGAGCTTTCGCGTAAAATGAGGTAGGTAGAAGATAGGTGTTGGGGGAGTGCTGATGTCTCAGAGCGATATGTTTGATCTTGATAAGCGGTGGCCTGATCTTTTTGACAGGCTTGACCCCGCGCAGCGCCGCTCAGTAATACAAACCTTGGCGAGTTCCTGGCTTGAAGGTCGTAGGCCAGATCGTCAAGAGGTCGAAAATTTAGTGGATGAAGCATGCGGTGCCATCAGTGAGGAAGAATACCTCCGGCGAGCACTGGAAAAAGCGCGTGGCCTTGAACCCGAGAATAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCCGCGTGTGCATGGGTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGTGTGCATGGGTGGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //