Array 1 125821-125614 **** Predicted by CRISPRDetect 2.4 *** >NC_018145.1 Zymomonas mobilis subsp. mobilis ATCC 29191, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 125820 28 100.0 32 ............................ ATAAATTGCAAGCTGATAGTGTTGAACAGATT 125760 28 100.0 32 ............................ AGCATCGCGCCACAGAAGAAGATCAAGCGTGT 125700 28 100.0 31 ............................ ACTGACAAACTGGAAATGCCGAACGCGACAA 125641 28 75.0 0 .............G...T..T...AGGG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGCTGTATATTTTTGCAGCATAACCGGAATTGAGTTTAATTTTGGCCTGTTGCGGCATGGCGGCCTTTGTAAGCCATTTTCACCACGAATAATCAGCGATATCCTATTTTCTGACATTGGTAGATTGTCCTCATCCTTATAGCCGAGTTAAGGCATTTAGGTGGATGTGTTTAATTTTCAGCCTTAGCATAGCGAGGATAGAGAAGAATAAAGGCTATTCAATGCTGCACATCGCCGAAAATTGGTCGAGAGAATAACGGGGTGTATTAGCCTTGCGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTTAATTCAATATGTTACCTATAGGCCTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGTAATTCTATCTATTGCCTCTA # Right flank : CTTTCACGTTATTTAGAAAATAAGATACACATCCTTACTCCAATAAAAAGAGCATAGGCTGAATGCCTCTATCGTCAATTTTAGGAAGTTCTTAGGAATGGTTTTCTTTATAGTCGTGGCAACAATTGTTATCGGCGGTCTGTTTTACTATTTAGAGCCTTCTTTGCAGCAACAGAAACAAAAGATCAAAGCGCATATAAGGAGGTTAATGAGGCCTAGCTATATGATCGCTGGATTCCTGTGTCTTTTAGCGGCTGTGATCACAGCTTTTGGCCTTGTTCACAGCCTTTCTTGGGGGCAAATGGGTAAGATATCTTTATTATCGGTTACAGGAATTTACTTTTTGCATATGGCCTATCGCCTCCCAAGATAGAGAGATTTATGCGTTGCCGGATAGGTGGGGGTAAAATTCAGGTGGTTTTAAAGAGGGCATGAAGCCCTCTTTTTTTAAGGTTTTTATTGAAAAAACGGTTTATTTTTTATTTAGGATTAGTCTTCTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1235875-1236082 **** Predicted by CRISPRDetect 2.4 *** >NC_018145.1 Zymomonas mobilis subsp. mobilis ATCC 29191, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1235875 28 100.0 33 ............................ CTGATCGGCAATATTCGACGGATCAACAGGCTG 1235936 28 100.0 32 ............................ CGCCATAGAATTGCAGAATTTGTCGGACACAA 1235996 28 100.0 32 ............................ TGAATACTGTCAAAGCTAACGGATTGAAATCA 1236056 27 89.3 0 .....................A.-C... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATTCCGCTTTCCTATTTTCTTCAGGCGCAAAAACAAGACGCCGCCACCAATAATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCGACATCAGGAGAAATAGCCAATATATTTCTAGGGTATATTGGTTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGACCCTAATTTGACCCTCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAATAACTTAAAAGCAAGCCTATTTTTTAGGGTTATTTTGCCTATTTGGCCTAATATCCCTTTATTTTAGGGATAATTTTATAAATCTCTTCTA # Right flank : ATTATCAAAACCGATGCCAATCATACCCTTAGATGCGACCTTCGAGACAAAAACATTTAAAAACAATTACTTAACCACAAAAACATTAAACCCTTAGAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTACCGGCTGAGGGAAAACGATTTCACCCTGCCGATATCTCCTAAATTTATCCCCCGAATAAATACATCCTGCTATAATAGGACTGTTGTCAGCTACGCCCTCGACACAACCGTTTTATATCAAAACATCCTTTTCGCTTTATCTTCTCACTATCCCGATAACCCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGACGCGAAACCGCTATATTACGCCTTCGCAGACTGGCGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1757239-1756728 **** Predicted by CRISPRDetect 2.4 *** >NC_018145.1 Zymomonas mobilis subsp. mobilis ATCC 29191, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1757238 28 100.0 34 ............................ GGCTTACGAATTTTGGACAGGAGACCGGCGTAAT 1757176 28 100.0 32 ............................ TATCCAGTCAGCGACAATTCCAGCTGATTTAC 1757116 28 100.0 32 ............................ TGATAAAAAATGGTTCTTACCGAGTGACTCAC 1757056 28 100.0 33 ............................ ACAGCTTCTCGGCATGGTGCCGCAGAACGGGTC 1756995 28 96.4 33 ........T................... AGTCGATCAGACCAGCTCCGACATCAAGATGCA 1756934 28 100.0 32 ............................ AGCTGCCCGACAGCGAATGCCGATATATTTAT 1756874 28 100.0 32 ............................ GCATTTGTCTTTTCCAATTTTGCTATAGCTTG 1756814 28 100.0 32 ............................ TGATTGATCTGAAGGTATTGTCCGACTTTTAC 1756754 27 78.6 0 .............T...T..G..-.T.C | ========== ====== ====== ====== ============================ ================================== ================== 9 28 97.2 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCTGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGGTTTAAAAGAGGGGGTCCGAAAAAAGGCTCCCTTTTTTATTGAGGATTATTGACGAGAAGTAAGTTGTAAGCGGCCAATTTTAGGATTTTTTCTATTCTAAAGGTCGAGATTAAAAGGTCTATTCCTTTTGCAGATGAGACAGTTAGAATGAGGCCTTTATTGGTCAATCGGAATAATTATGATGGGTGGAATCTGGGGTAAATAAATAACCTCGTTTCATTCTTGCTATACTTTCCGATCGTTTCCTTTTGTAAAAGGAAAAAGAAGCGTTAAGATCACGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTGCATTTGACCCTCTTTTTTAGGCATGTAAAAAAATCCTGTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCCATTTTTGCCCGATATGCCTTGCATTTAGGGGGATTTTTAATTATTTGCTCTA # Right flank : TTAATTTATGTGTTGTTCTGTTTCATGGTTGGGGGGTGTTTTATCGGAGGCTATTCGGTTCTCAAAATATGTCGCCGGCACTTCTTTTTCTTCTCTGTCTTTTTTTTAGCTATTCCGACCAGAATAAAATCATCTGTAGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGAGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTCATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCTGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //