Array 1 1-3175 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXS01000018.1 Denitratisoma oestradiolicum strain DSM 16959 scaffold_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. AAACAGGCGCTCTTTCCTGGCTGCGGCAGGCC 62 29 100.0 32 ............................. CATCTGCATGAGAATCTGGGAATGAGCATCAC 123 29 100.0 33 ............................. CATTGCAGGCTCCGAACCTGCGCTGATCGAATC 185 29 100.0 32 ............................. CGTTACATCCGCGCCGTTTCCACCGTTTCCGG 246 29 100.0 32 ............................. AGAGAGCCGACCTGCTGAAAACCCTGGAACAG 307 29 100.0 32 ............................. GCGGCAGCTACCGGAGCGGCGATGGGGGCGAC 368 29 100.0 32 ............................. GATTTTGAGGACTTCAGGTCGAGATACCTGAC 429 29 100.0 32 ............................. AAATCTACGCGATCAAATGTTTTCCTGAACAT 490 29 100.0 32 ............................. GCGGCTATCGAGTGGGCGGAATCTCTGCCGGA 551 29 100.0 32 ............................. GCGCTTCGTAGAAAACTGATCGTCGTCGGCGC 612 29 100.0 32 ............................. GCGGATACACCGGGGTTCCGTCTGGTTTCTAC 673 29 100.0 32 ............................. AGTTGCATGATTCCTAGCCATCACTTGATCCC 734 29 100.0 32 ............................. CCGCCCCACCTCAGGCGCCTGGACCTCGAAAC 795 29 100.0 32 ............................. ACCACATTCACCAGCGCGGCAACGATCAAATC 856 29 100.0 32 ............................. GCTGCCCGTTCCCGAATATGGCTGATGGACCA 917 29 100.0 32 ............................. ACAGTCTCCGCACTGCTCGCAGGTGGCTACGT 978 29 100.0 32 ............................. CTCTTCCAGGGCCTGCGCAACGGTTCCGTCAG 1039 29 100.0 33 ............................. CAGGTTCCGAAAAACAAAGGCGACAACATCAGC 1101 29 100.0 32 ............................. CCAGAGAGCTTTGCCGTTGTTGTACCACCAGT 1162 29 100.0 32 ............................. CTCCTCTTTGATGATCAGCTTGACTACCCCGC 1223 29 100.0 32 ............................. GTGGCGGCGTATTTCAGGGCAGAATCCATGTC 1284 29 100.0 32 ............................. GCGTCCGGGTTGAATGACGGGTTATGTTTCAT 1345 29 100.0 32 ............................. CCAGAATCAACGCTCTATACCGTCACTGGGTA 1406 29 100.0 32 ............................. TTGACCCGGGCAGGGAATATGACGGCGTGGGC 1467 29 100.0 32 ............................. CCTACATTTTCACAGATTGGCGCATGTGGGTT 1528 29 100.0 32 ............................. GGATCTGGCCGAGAGGTGAGCGTCGAGCAACT 1589 29 100.0 4 ............................. GGNT Deletion [1622] 1622 29 100.0 32 ............................. GGATCTGGCCGAGAGGTGAGCGTCGAGCAACT 1683 29 100.0 32 ............................. GGCGGGATGAATCCGCTGGGGCTTGTGGCTGC 1744 29 100.0 32 ............................. TGACATTGAGAGAGTTCACCGATAAGGATGGA 1805 29 100.0 32 ............................. TTCGAACGGCGCAGCTAACGCATTACACACCA 1866 29 100.0 32 ............................. ATGCGTGGCGGACAAGAACAACCCCAACAGCA 1927 29 100.0 32 ............................. GATGCGCTCATGGCCGCGGCAGAGATCCTCTC 1988 29 100.0 32 ............................. CTTTTGCTGCGCATTCGGAGCTTTCGACACCA 2049 29 100.0 32 ............................. TGTGGGCGGTGATTCGGGCGAGGCACCCGGAA 2110 29 100.0 32 ............................. AGGCTGAGAATGTCTTTAATTCTCTAATCCCA 2171 29 100.0 32 ............................. CTTCTTCAGCCCTGCAGAGATGGCCGTTACCT 2232 29 100.0 32 ............................. TAACCTCGTACAAGAAGCTGATCAGAGACCAC 2293 29 100.0 32 ............................. AATCGCAGAGTCCCGCCGACCGGGATGTTCAC 2354 29 100.0 32 ............................. CTCATTTGCCTGGCCGATGGTCCAATGCAGAG 2415 29 100.0 32 ............................. TGTCCGGCGATTTTTTGAGAATCAAACTCGCC 2476 29 100.0 32 ............................. GCCGCGACCCAGAACTGGGTCGACTTCATGAC 2537 29 100.0 32 ............................. ACATTCTGAACAGGCTCCGGAGTCCACATAGC 2598 29 100.0 32 ............................. GGGACCTGATATGCCAACCATTATTCTCCATG 2659 29 100.0 32 ............................. AAAATGAACTGGATCAATCGACTGAAGGAGCC 2720 29 100.0 32 ............................. CCCGCCGCCGGGCAGTACAAGGTGCTGGCCAC 2781 29 100.0 32 ............................. ATGTTGAGTGCCCGCTGGAACCACAACGCCGC 2842 29 96.6 32 .A........................... CATGGGCACAGCTACCGGCGTGGCCAGCCCGA 2903 29 100.0 32 ............................. GTGGACAGCGCTTTGCGGGCGACGGTGTTGGT 2964 29 100.0 32 ............................. GCGAGTTTGTGCAGCTTCGGAAATCCACGGCA 3025 29 100.0 32 ............................. TCCATCACCAGATGGGTGGCATCCGTCACCAG 3086 29 100.0 32 ............................. ACCAGCCCCACCGATGCCGTGCGCGCTCCCCG 3147 29 86.2 0 ............C..........A...TT | ========== ====== ====== ====== ============================= ================================= ================== 53 29 99.7 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : | # Right flank : TTCAATGCAGAGACCGAGTGTGTAACCATCTGGGTTGAGAGAGTACGACGATTCCCTTTTCCCCTGATGAAATTTCCCTCATGGGCTGATCTGCTTGGGCACGACTCGTCCAGAATGCAGCCACACACATTCAAAAGGTCGACGAGCGATGAACTGGCGGGGATGGGAGGAATTTCAGTCGCTGATGCGAAGGGAAATGCTCCATCTGGCGACGATCAACGCCAGTGACCGGCGCTGGCAGATGCCGTTCTGCGCGGCTCTTGCCACGGGCCTGCCGCTTCTGGTCGGGGCTTATTTCGATCACATGGATTACGGACTTGTTTCGTCCCTGGGTGGGCTGGTGTTTCTCTATGCGCCCAACACGCCGCTGTCCCATCGCATGGTGTCGCTGATGGCATCCGCCTTCGGCATGAGCGCCTGCTATGCCCTGGGGGTGATGGGGCACTTTTTCCCGGTACTGCTGGTACCCGTGCTGGCCTTTATCGCCATTCTGGTTTCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3500-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCXS01000016.1 Denitratisoma oestradiolicum strain DSM 16959 scaffold_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3499 29 100.0 32 ............................. CAGTAGAGGCTCATTCCGGAGCCGTCTATCTC 3438 29 100.0 32 ............................. ACATCGAACGCCACGCTATGCGCCGCCATTGA 3377 29 100.0 32 ............................. TACGATGGGACAACGCCGAGGGAGGCGCAAGG 3316 29 100.0 32 ............................. CGGGAACGCGGGGAACTGGCGGCGGAACGGCT 3255 29 100.0 32 ............................. CCAGCCGAGCAATTTCCCGTAGGGTTCGCTCA 3194 29 100.0 32 ............................. AATTATCAGCAGTCCGCAGCGATCTCTGCTGA 3133 29 100.0 32 ............................. AATTATCAGCAGTCCGCAGCGATCTCTGCTGA 3072 29 100.0 32 ............................. CCCCATATCAGCGCGTATTACGAATGGTTGTT 3011 29 100.0 32 ............................. TCTCGCCGAATCAGCGCATGGAATTTGTACCC 2950 29 100.0 32 ............................. GCAACTTCCGTGCGCTACAGGAGGCTGCATGA 2889 29 100.0 32 ............................. CATCGACATGACCACCGTCTACCCCTCCCGGG 2828 29 100.0 32 ............................. CCCCGCCAGCGGCTGCGGTGCCAGAAGGCTGG 2767 29 100.0 32 ............................. TCCTCATTGGCCGGGCGGCTGGTGCCGATGTC 2706 29 100.0 32 ............................. CGAAATACAGAAAAACGTCAATGGTGCCCCCG 2645 29 100.0 32 ............................. TCCGCAATGATGGCCGGGTCGGACGTTGGCAG 2584 29 100.0 32 ............................. ATCACGGCCAGGGCACCGGCCCCCATCAGGGT 2523 29 100.0 32 ............................. GCCTGAAGGCTGAAAATGGCGAGGTCGAAAAA 2462 29 100.0 33 ............................. GGCACTGGTGAAGTGAAACGTCGGTATCGGTGC 2400 29 100.0 32 ............................. GACGGGCGCATTGTGAAATTGATGGATGATGT 2339 29 100.0 32 ............................. CCATGTTGCAGGAATTGCAGGCCGCCAACGAT 2278 29 100.0 32 ............................. CATCCTGCCGAGTGCGCCAATATCGGCCCCAC 2217 29 100.0 32 ............................. CGGACCATCACACAGGAGGCCCACCATGCAAC 2156 29 100.0 32 ............................. GAATGGATCGGCCCGGCAGGGCCGCGCCAACT 2095 29 100.0 32 ............................. AAATCCGCCGTTCTAGATGAGGGCGGGGTAGT 2034 29 100.0 32 ............................. CAACTTGGGGTTAAGCCGTCACCGGAGGCGAT 1973 29 100.0 32 ............................. TACTGCCCCGCCGTGTAGGTTCCCGCGGTGTC 1912 29 100.0 32 ............................. GCCGTGGAGCGCAAACAAAGCGTGAAACCGGC 1851 29 100.0 32 ............................. CTCGCCGGACGATCAGCCATGTGAAAACTGGC 1790 29 100.0 33 ............................. ATTATAAATGGATGGATTCGTGTTCCTGGGTAT 1728 29 100.0 32 ............................. CATCTGCATGAGAATCTGGGAATGGGCATCAC 1667 29 100.0 32 ............................. ATTATCCAGATCGCCGACGAAGAGGTTACGGT 1606 29 100.0 32 ............................. TCAGCGGCGCCGGCACGGCGTCCGCTGGACTG 1545 29 100.0 32 ............................. TCCCCGCGCCATTCGAGGCGCCCGCCCCATAG 1484 29 100.0 32 ............................. ACGACGCGATAAATGGCGGCAATGCCCAGTAC 1423 29 100.0 32 ............................. CAGTTCCGCCAGCGTTATTTCTGAAGGCATAG 1362 29 100.0 32 ............................. GCGGAGCGCGAAGACATGGTGGCGCTACAGGC 1301 29 100.0 32 ............................. TGACATTGAGAGAGTTCACCGATAAGGATGGA 1240 29 100.0 32 ............................. TTCGAACGGCGCAGCTAACGCATTACACACCA 1179 29 100.0 32 ............................. TATCTGCCGGAGTTCAAAGAACGAAAGCTCCG 1118 29 100.0 32 ............................. GTTTATGCCATGGGGCCGAATCCGAATCCACC 1057 29 100.0 32 ............................. CCTTCCTTTTCCAGCTTCTTGGCAATGGCCTT 996 29 100.0 32 ............................. TTATCGGCGATTCTTCCATCGCTTCGGGATTG 935 29 100.0 32 ............................. GCGTTCCAAGGGAGGAATTTTGGATCGAGCCC 874 29 100.0 32 ............................. GTTTCCCAACAGGTCCAGTTGCTCGGCGTTCG 813 29 96.6 32 ............................A TCGCGGCGGCGCTGCGCGACGCGGATTACCAC 752 29 100.0 32 ............................. GAGGCGAGGCTATGAATTTCGCGGACGAACTA 691 29 100.0 32 ............................. GCCAGATTCGGATGGCTACCACGGCTCAGGTA 630 29 100.0 32 ............................. ATTGTTGCAGCAAACTCAAACTGTTGGAGGTC 569 29 100.0 32 ............................. GTGGTGCCCTTCTTGGGTCTCAACCTTCGGAT 508 29 100.0 32 ............................. GCTTGGGCGGTGCGCAGAATTGAGGAGGGAAA 447 29 100.0 32 ............................. ATCAGGATCGGGGCGCCAGATACTCCAGCGTT 386 29 100.0 32 ............................. AAACAGGCGCTCTTTCCTGGCTGCGGCAGGCC 325 29 100.0 32 ............................. AAACAGGCGCTCTTTCCTGGCTGCGGCAGGCC 264 29 100.0 32 ............................. CATCTGCATGAGAATCTGGGAATGAGCATCAC 203 29 100.0 33 ............................. CATTGCAGGCTCCGAACCTGCGCTGATCGAATC 141 29 100.0 32 ............................. CGTTACATCCGCGCCGTTTCCACCGTTTCCGG 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.9 32 GTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : CCTGCTGGAACGCATCATTCCCGCCATTGAGGAAATGTTGTCCGCTGGAGGAATCGAACCGCCCCAAGCCGCCCCGGAACAGGTCGGTCCTGCCATTCCTGAACCCAAGCCCATTGGCGATGCTGGTCATCGTTCTTGAAAACGCGCCGCCACGGCTGCGGGGAAGGTTGGCCGTCTGGCTGCTTGAAGTCCGGGCCGGGGTCTATATCGGCAACTATTCCGCCAAGGTGCGTGAGCACATCTGGACACACGTAGAGGCGGGCATCGGCGAAGGCAATGCGGTCATGGCCTGGCGTGCCAATAATGAAGCGGGTTTCGACTTTCTGACGCTGGGAGCCAATCGCCGAGTTCCACTGGAACTGGACGGCGCCAAACTGGTTTCGTTTCTCCCACTTGAGGACAGTCTGAAAGCTCCTTAACAACCTGGACTTTGGAATAAAGGAGTCGGTAGAATCCGACGCCTTGTTTTTCCTGTACGGAATCAATTACGTACGGGAAGT # Right flank : GAGAGAGCCGACCTGCTGAAAACCCTGGAACAGGTGTTCCCCGCATGCGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //