Array 1 112124-111506 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 112123 36 100.0 42 .................................... ACCTGTAATAGCACCTTGATGTCGGCTACCAGCCTTGTAATC 112045 36 100.0 35 .................................... AACTTCATGCTGCTTGCAAATCTTGAAAAAACCAA 111974 36 100.0 36 .................................... TCTGAGCCATAGTACCTTTGAGAGCATCTTTGTCAT 111902 36 100.0 39 .................................... ACTCAGGTCAGGCACACTGCCACTGTGTCCATGAATTGC 111827 36 97.2 35 .....T.............................. TGTTAGCCTGGCTGTTTTCATCTACATTGATGCGT 111756 36 91.7 37 ...G..G........................A.... ACTGTGGCGCAGCTCATCTGGAAGAAGCCATTGCTGT 111683 36 88.9 34 ......G....A..A....T................ ACACAAGTGTTGGGAGCGATAGACGCAGCACCGA 111613 36 83.3 35 ...G..G...G.A......T..G............. CGACGAATTGCCCAGCGCAGTTGAATTTCTATTTG 111542 36 77.8 0 ......G...G.A..A.....C........AA...T | G [111537] ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 93.2 37 CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Left flank : TTTAGTAAGCAAAAGTAGATATTGCTTTCTTCAAAGCTGCTTTTGCTTTCTCATTTAATTGTATTTAGTAAGCAAAAGTAGATATTGCTTTCTTCAAAGCTGCTTTTGCTTTCTCATTTCAGTATATTTAGCAAGCAAAAGCAACTATTGCTTTCTCAAAAGCAGCTTTTACTTTCTCATTTCAGTGTATTTAGCAAGCAAAAGCAACTATTGCTCAAAATCCACCAGTTAGATTTATGTAAAAATTAAGTAACAAATCTGACTAAAAATCGGCAAAAGTTGTATTTTAAGGATAGTTTGTGTCCTTCATCGACACCAATCACCAGCACCTTGAAAACCGCATAATTTCTTTGACTTCTGTCGATTGCCTACGCAGCAAAGCTTTCAGGTTTTGACAGCTTGGGTTTACTGAGAATTCTTTGGAGCTATTGACACTCAAAAAAGTGGTGTCGATTGAGGGGTTTCAAACCCTCTCCTGGTAAGGTTTCCAAAAGTGAACT # Right flank : CTATTAGTAGTAGCTGTAGTCAGGGGAAAAGCATTCGCTAGGCGATCGCATCACCACGGCAACGGGATAAAAAAAGTGAAGATAAGCAGTGCGATCGCACCTACTCAAGCAAACATTGCTGTCCATCTCCCTCGTCAATCCTCAGTGGTGCGTTATACTGCAGGCTGACGCACCTACCGCTTTGTGATTTGTGATTTGTCACAAAATGACAAAGCGCAAAGTCTGAGCGCAGGTTTCCTCCGATCAGAACTTTGTAAGAATGACCAATAACCAATGACAAAATGAAATTTTTCCGGATTTGAATTCAGGAAAATAGAGATCCTGATTTGATTTATACTTTTAGATTCGTCTGATTATCGAAAAGCTTGAAAGTTGTATGTCCAGCCCCAGTCCCGACACAGTTCGCGTTTATTTGCAAGAGATTGGTCAGTACCCCTTGTTAACAGCAGACCAAGAGATTGCTTATGGTAGGCAGGTACAGCAAATGATGGCCATCGAGC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAATCACCTCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 369579-370261 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 369579 37 100.0 34 ..................................... TCTCAAACTTCTTTAGATGGTGCTTTTAAAGAGT 369650 37 100.0 34 ..................................... GAGCTTGTCTAGCCTTTCATCCCAAATCCCTTCA 369721 37 100.0 35 ..................................... CTAGGACTAATGCGCCAGAAAACGCACCAGATGAG 369793 37 100.0 34 ..................................... CCGCAACTATTGCTAAGTCACGAGTCTACTAAAA 369864 37 100.0 34 ..................................... TTAATGTGCAATGCGGTAATTGCTCATCTGGTAG 369935 37 100.0 36 ..................................... ATTAAGATAACGATTTCCTGCACAGAGCTATTTTGT 370008 37 100.0 36 ..................................... AAGGAATTCAGACAGCAGGTATTGAGTTTGCTCAAT 370081 37 100.0 34 ..................................... TAAGGGTTGCTCGTGTCCACTGTGGACACGAAGG 370152 37 100.0 36 ..................................... GCGCCGCTTTTAGTGCGTCGCACTGCGCCATCTAAA 370225 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACCTGATCGGGTTGTCTATCAATGAGCGCTCATCCATAGAGAACATCGGTTCCTTCACAACCAACCAGATCGGGTTCTCTATCAATGAGATCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGATCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTAAGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCCACCGCTTTATTGCTTCTTAATCACCCGCGCGCCTTACAGGGATTGACTTTCAGCCATTTTGGGTTTGCTGTTTCATTCTTGCTTATGTTATGATTGCACTGTCCGCGCAACCGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCA # Right flank : CAGCTAACACGCGATTCTCATTAACTGCTTTCTCAAGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTAGATCAAATTATGTTACTGGTGCCGTGCCCCCACCAAGTATTAGAAATTGAAACTGATATTTAATTTCTCTGCACATTCCCTAGGCTGGTTGAAATTTCACCTAATACCAATTTAAATAATATTTGCGACAAATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTAGATCAAATTATGTTACTGGTGCCGTGCCCCCACCAAGTATTAGAAATTGAAACTGATATTTAATTTCTCTGCACATTCCCTAGGCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAAATAAAGTCTTTGTAAGGGCACGGCATCCACAGTCTTTTGGTATATCAAATTATCTGACTGGTGCCCATTGGTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 3 441458-441712 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 441458 37 100.0 35 ..................................... ATAGCTACAGTATTTATTTTCATACAAATAAGCCC 441530 37 97.3 36 ......................A.............. GTCGTACTTGGATTTAAGCCAAACGTTCGTGGGACG 441603 37 100.0 36 ..................................... TGGCTTTCGCTGCTGGATATAACAACTACTTGACTC 441676 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 36 CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Left flank : GTATCTTAGTTAAGCTCTGGAAGTAGAAATTCTCATTTACCAATCTTGACAAAGATAATATTATTCAGCGATAATTAGAAACGCGTATTCCGGGGTTATAGCTCAGTTGGTAGAGCACTTCAATGGCATTGAAGGGGCCAGCGGTTCGAATCCGCTTAACTCCATATGTACATTAAATTATTATTGTCAGTTTTAAAGAATTCTTGTCCATTTTGACGTAGTTAAGGGACATAAGTAACCTATTTTCTTGACTTTCAGCACTCAAACCAGTTTTAAATAATTATTGTCCAGAGTTGAAACCAGTTTTAAATAATTATTGTCCAAAATTAAGTTAAGTTTCTCGCAAGATACATTGACTCTAAATGTATCTAGAGATCTATGGGATCAACTGCACAGGTTTTGGCAATATGCCATTGAAGTGCTCCTTTCAAACCACCCTAATAAATAATTTTACAATAGAAGACATAATAGTGAAATTGCTGAAAACATAGCGATAAAAT # Right flank : CCCCGCACTTGTCAAACTCTTATCCTGACTATTTTCCAGAAGCGATTTTGGCAAGTCTACTTAAAAGCCTATTTTCTATCACTAACAAATAAACTTGCATTCGCATTGAAATGAATGAAATGCAGTCAAGACAATAGTTTTAGCCATTTGGCAGCACTCCAGGGATTTTGCCCCTGCTTTGACTTGCCAAAAATAAAAATTAGGGGGTGGTAGTTCGGTAGCCACCATGACGGTATACCCGTACCCTTACTTTGCTGTAAAGTAAGAGGTAATGATGTACTCATACAACCAAAATCCCAGATTTCAGTCATATAGTCCGCTCTGTCACCTAACACCAAGCAAAAAGAGTTTGATGTCAAGAGCTAAGGTTCTGGGCTGTTTGTCACCCTAACACCTTATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAACAGCAGCATTTGCTTACCCAAGCAATTACTGCTAACAAACGCTTAGATGAACGCACAGGTTG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCACCAGCCGTGAGGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : NA // Array 4 2117721-2116236 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2117720 37 100.0 40 ..................................... GCTCTTGGCGTGATACCCAATTGAGTGGCCACATAAGAAA 2117643 37 100.0 36 ..................................... ATTACATAATCATTATTTATAGGAATGTCAATTAAG 2117570 37 100.0 34 ..................................... TTGTCGGCACTGAAAGCACTTCAAGAAGAGGATA 2117499 37 100.0 41 ..................................... AATGCAATCTAGTATATTTTCTTTTGGACAAACAGAAAGAT 2117421 37 100.0 36 ..................................... CATCCACTAGAGAAGAATACTACAAAGAAAATTTAA 2117348 37 100.0 34 ..................................... AAATACAAGTATTTCAACTATTCCCTTGAGTTTC 2117277 37 100.0 35 ..................................... ATCTGACAGCGACCCTGCGGTAGTTGCAGAGATTG 2117205 37 100.0 35 ..................................... ATCAGCCTCCTTATTTTGCAAATAAGATGCAATCT 2117133 37 100.0 36 ..................................... GAAATACTTAAGCTACTACTTCGATTCCTTTAAATG 2117060 37 100.0 33 ..................................... AATGGATCTACACCGGAAACACACCAAGCTGGG 2116990 37 100.0 34 ..................................... TCAGGCTTAGACTCTGCATACTTAATAAACAATA 2116919 37 100.0 34 ..................................... AAAAATAGAAACTTGCCCAAAAATTGCAATAGAA 2116848 37 100.0 36 ..................................... CTACTACCGCTATTAGTTGGAGTAACCTGACATTGG 2116775 37 100.0 36 ..................................... ATTTCAGGATAGTAAGTTGATTCGTGGCTTGAATAT 2116702 37 100.0 33 ..................................... TTTAGGTTTATCCGGGTGTCCGTAAAAAATAGA 2116632 37 100.0 36 ..................................... AAAGTCTAGATTTGGCTGAAATAATACCAAGTTTTC 2116559 37 100.0 35 ..................................... AAAATCAAACCAGCCGCAGCTGTATCAATGCCAAT 2116487 37 100.0 34 ..................................... ACGTTACTCAAACCCTGTGCAACATTAGCAGCCG 2116416 37 100.0 34 ..................................... GGCTTCCCAGATTTTCTACCTTTTCTGATTTGTA 2116345 37 100.0 36 ..................................... ATCAAGGCTGCATGGGATGAGTGGGTGCAAGGAAAG 2116272 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 21 37 100.0 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACGTGATCGGGTTGTCTATCAACGAGCGCTCATCCATAGAGAACATCGGTTCCTTCATAACCAACGTGATCGGGTTGTCTATCAATGAGCGCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTATGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAAAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCTACTGATTTATTGCTGTCCAATCACCCGCGCACCTTACAGAGATTGACTTTCAGCCATTTTGGGTTTGCTGTTTCATTATTGCTTATGTTATGATTGCACTGTCCGCGCAACCGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCT # Right flank : GATATTAAAAAACTAGATGTTTACTGCAATAGACTAGTATGAACTACCCACAGTTGGCTCCGCCTGAACTGTGGGTAGTTCATTTGTTAGAGATTCTAATACACTAAGGGAGTTACGCCGCGCATTTGACGTAAGGAATTGATGCAAGCTGGACAATCGCAACCAAATAATGCGATCGCAGTATCGCTTTCTTGATCATTAAACTCTAACATCGGTACACCATCTGTAGAAGGCTGTGCTTCTTGCTGATACTCTGGTATTTGAGCCAATACAGAAACTCTCATACAGACTAAACCAACTTTGTGCTTATTGCGGATACAAGATAGACGGTCAGTATTTGCTGGTACTGGATCTGCTGCTTGAGCTTGATTGATTGTCACTCCCATAGACAAGATAGAGCTTATCAGTACAGGAGTCGAAAGCAAGTGAAGTAAAAATTTGTTCATGAGTTTCCAGGTGAAGAATTTCGACTGCTCACATGAGCCGATTTCATCTTACAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 5 2444568-2445687 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2444568 37 100.0 33 ..................................... GGTCAGGAAGAACCGCCTGAGACTGTTGAATTT 2444638 37 100.0 32 ..................................... CTATTAGCAATTATGGTTCATGGACGATGGAC 2444707 37 100.0 34 ..................................... TTAAAGATGAAATCGAGCAAGCTGAAATAGATTT 2444778 37 100.0 37 ..................................... AATTGAGGATATTGATGCACTGGTGCGTAAGCATAAG 2444852 37 100.0 35 ..................................... TCATACAATTGAGAACTCATCCATTAATTGAGCAA 2444924 37 100.0 36 ..................................... TTAAAGATGAAATCGAACAAGCTGAAATAGATTTAT 2444997 37 100.0 38 ..................................... AGACAATTTAACCAAGGCTAAAACAAGGTATATAAAAT 2445072 37 100.0 34 ..................................... AACCAAAGGGCGATAAGCAATTCTCTATTTACTA 2445143 37 100.0 40 ..................................... TGCCTACCTTTTTTGCGAATGATGTCTAGACTTGGTAGTG 2445220 37 100.0 35 ..................................... AAGGGTGATTGAAGTTAACAATGAGAAGCTATCAA 2445292 37 100.0 33 ..................................... ATTCGATGTGTAGGTAAACCATTTATTACTTCC 2445362 37 100.0 36 ..................................... TACATCTGATAGTACGACAGAGACAGTGGACTGCTG 2445435 37 100.0 35 ..................................... AACATTGACAACGCTACCACTACCAGTTCCCGGCA 2445507 37 100.0 36 ..................................... TGCTACCAATTACAGCAGTAGCAGAAAACCTCAACA 2445580 37 100.0 34 ..................................... TGGCCATGATGAAAACCAATTAGAACGCACAAAC 2445651 37 81.1 0 ....A..............T.......AA...A.G.G | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 98.8 35 ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ATTTAGGGGAGGATGATACTGAGCGCCCTTTTGACTTAAGTCTGGTGCAACCTGTCACTGAAATTACTAATTCGTAATTCGTAATTGGTAATACTCTTGCTGCATTTCTCACAAGCAGCGATACAGCATATCTATGTTAGGTTAAGCGCTGGCTTAACCTAACATGGATATTGAAAGCTTCACTTATATTTTTTGTGATGTGGTTGCTGCTTTGATCAGTTTGAATCTATTGGCGAAGAACTAGTCCGGAATGATACGATTTTCTTCACGGGATGCGCGGATGGGTAGGTGTTGCAAAAGCGGTTTCCACAAAAATCTCTGAAACTATCTTTGTATCAGGCTTTTCAAGCTCCATTGCTGTAAAATCACCCGCGCACATTACAGAGAAAGGCTTTCAGCGATTTTGGTTTTGCGTTTTTACTATTGCTCATGTTATTATGGCACTGTCCGCGCAACAGAACCTTGAAAACTGCATACACAGTGCCTTTGGAGCTTCTGCC # Right flank : GTGTATTGAGCAAAGTAAAAATCAAATAACTGTAGGGTCTATTAGGCGCTGATTTGCAAGATGATTTGTCACGGGATAGCTATGCTAGCGCCTAACGCACCATTCACGCGGCGGTGCGTTACGGCTAAATTTCTTTATCTCTGTGTCCCAAATCCTTTCATAGCCGTAACACACCCTACTGGGCTGACTCCATAGCAGATGTTTTTGACAAAATACTTGCGTTGTTAAACAAAGTGCTTGTCTTGTGTATACGCCACTCTACAAACTAAAAATCAAAGGTTGTCCGCAACACTCCAACATATTGGGTATTATTGCTGCTATTGTTCTCTGGGTTGAGAATTACCCAAAAGCCGGGAGTCACTGAGATATTATCGTTGAGCCGCATACGGTAAAAGGCTTCGATATGGTAAGCATGGTCGCTTTCTTGACGGATATCGCTGCTGGTAACGTGGGGTGGGATACCAAATAAGATTCCTGGGAGATTACCTCTTCCTCCGAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 6 3059039-3059435 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3059039 36 100.0 38 .................................... GAAATTAAGCATTTTTTTGTCCTTTTTGAGGTTCTTTT 3059113 36 100.0 34 .................................... TTGTTTTCAGTTTTGTAAACTAAAATTCCTTTGA 3059183 36 100.0 38 .................................... CCATAATTTCCACATGAAGTTAGTAGCACAGATAAAGA 3059257 36 100.0 36 .................................... GCTGGTATTCATCAGGGTAAAACAATTTAATTTCTC 3059329 36 97.2 35 .............C...................... TGCGATAAGGATTTTTTTACTACCTAAATCAACAA 3059400 36 80.6 0 .....TGC..G.........T.....AT........ | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 96.3 36 CTTTCCAATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : CAAAGTGTTCGGTTTGTTAAAGAAAGCGTTCGCCTTGTTAAACAAAGTGTTCGGTTTGTTAAAGAAAGCGTTCACCTTGTTAAACAAAGTGTTCGGTTTGTTGACTAGTGATCGCATTTTGTTCACGTACCCAAGCAGGCGATCGCACATTTCCTCTGTTGGTTCAAAATTGCGTGTAGACATCGCCTATCAAGCCTCTAACAATCTTTACTTGCAGATGCGATCGCTCAAAACCCCTGCGATTTCTGTAAACATTATGTAATAAATTTGACTTATACAGGGAAAAAGTTATATCTTAAAAATAGCGTGCGTCGCTCATCGACGCATCTCGCCCGAACCTTGAAAACCGCATAAATCCGTTGAGATGCGTCGATGCCTTATACAGTAAGGTTTTCAGGCTGCAAAATCGATGCTTTTGAGAAAATTTTTGATGATTTTTCAGAGATGCGTCGATTAGGGGGTCTCAAACCCTCTCCTAGTAAGGTTTCCAGAAGTGAACT # Right flank : CTAGATCCCCGACTTCTTTAAGAAATCGGGGATCTGATCTAAACTTTGCGATCGCAGATTAAATCTTTTACCCCTCACGGGGATGGAAAAAGTTGAAATGTCTAATGAGATCGCATTCAGCAAGAGAATTTTTAGTGCGTATAGTATAAGATTCACACCATATCGCTACTATAAATTCAGTATTGTGATTTCCTATTTTAAATTTAATCAAGGATGGTTCGTAAACTTTTACCCACATCACAAATGATATTAGTCCATATACCCAGTTGGCATTTGCGTTTCAACAGTGTTCTCTGAAATTGGGCGGCTACCATCTATTTCTAGAGTATCTTGAACTTGAAAATTATTCTTAGCAATCGGACGTTGTCCGTCTATCTCCAGAATTTTTTCTACCTCTAAATCATTAGGGTCAATTGGCCTTTTGCCATCTAATGTTAACATCTCATGCTCTGGAAAATCACTCTTACCAATCGGGCGTTGTCCATCTATATCAATTGTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 3356668-3355623 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3356667 37 100.0 34 ..................................... CTTGATTTGCAAGGGTTTGAGGGGTGCTGACTGT 3356596 37 100.0 34 ..................................... ATATACTATCGATGCCCCAGTTTGCCTGCCTTTC 3356525 37 100.0 41 ..................................... GAATCAGCAATAGCTAGCGATAAAAACGCTAGTAAAGGCAA 3356447 37 100.0 35 ..................................... TTGCTGCTTCTATGTATTCGGGTGAAGGATTTTTA 3356375 37 100.0 34 ..................................... ACAACTCTTGGCGAAAACCCACTCATTGAATTTC 3356304 37 100.0 34 ..................................... CTAATAGCCTCCAGTATTTTGATAAACCTATTAC 3356233 37 100.0 37 ..................................... GTAACTTTGATTGTCGGTAGTGTCAATAGGATAATGT 3356159 37 100.0 34 ..................................... GGATCTGGGGTGTAATTCGGAATATCAGAATTTG 3356088 37 100.0 34 ..................................... TCGATAAGTAACAACGGCTTTTTGCTTCCTTTAA 3356017 37 100.0 34 ..................................... ACAGTGGTGGGAGTTCCAACTTTCACTCCATGAG 3355946 37 100.0 37 ..................................... CTTTTTCCTCGTCCATCATTGCCTTGTATTGGCGCTC 3355872 37 100.0 32 ..................................... TAAATTGGTTCGCTTCTAATGGGCGTATTATT 3355803 37 100.0 36 ..................................... AAGAGAAGGTTAAGGCGATTTTCTTATCCAGGTAAA 3355730 37 100.0 34 ..................................... GTGACATTGCCAGCACACTTACTCAAGCATTAGC 3355659 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 99.8 35 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : ACCAACGTGATCGGGTTGTCTACCAATGAGCGCTCATCCATAGAGAACATCGGTTCCTTCATAACCAACATGATCGGGTTGTCTATCAATGAGCGCTCCTTCACGCACAACCAGATCTCCTTCACGCACAACCAGCTCTCCTTCACAACCAACGAGCCAATTTTTCGATTAACTAGCTCTCAATAATTGATGTTTTAGCCTTCCCTAATGCATTGCCTGTGCTGCTATGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCTACTGATTTATTGCTGTCCAATCACCCGCGCACCTTACAGAGATTGACTTTCAGCTATTTTGGGTTTGCTGTTTCATTATTGCTTATGTTATGATTGCACTGTCCGCGCAACAGTACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCT # Right flank : AAGGCTCACTTGGATGAGTATGAGAGCCGAGGTTGCAAAAATTCTCTCGCAAATAGATGGCGGTAAGGTATCAGTGGCACAATATCAAAAATGGCTGAAGAATAAAGCTGTAGCCTACGGTACAGAGCCAAAAGCCTTTCTTAAATATGCCGCATTCATGCATGAAATAGGGATGCTAAACAAGCAGCCAAAATCAATTGATGAATTAATTTTACCGACACTTCAAGGTGCTGGTGGAGATTAATTTATGGCAGATTTAGACTCGTTGATTGCAGCTAAAAATGTGCATATTAGCTACAAAGATAGTAAGCAGAAATTTACGGCTGTACAAGATGTTAACTTTAGTGTGAAATCGGGAGAAAAGTTTGCCATCATTGGGCCTTCGGGTTGCAATACTTGTCGGTTAAGGGGGAAAGGGGAAGGGGAAAAGGGGCAAGAAAAAACCTTTAACCCTTACCCTTTCACCTTTTCCCCAAACCAAATTCCGAGTTGAAAATCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 8 3593984-3595191 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3593984 37 100.0 34 ..................................... AGGAATGCGCCGCTAGCAGAACCAAAAGTTAATC 3594055 37 100.0 35 ..................................... CAATTCTTAAAGTGTATTTAGGTTCCCATTTTAAG 3594127 37 100.0 34 ..................................... CTTTTTAATAACTCAATACTAATTTGGCTGAAAT 3594198 37 100.0 37 ..................................... ATAATTACCCTAATATCATGAAATGCCCATGACTTTG 3594272 37 100.0 35 ..................................... ACTTCACTTCCTGATGAAGCCCCCGCCGACAACTT 3594344 37 100.0 37 ..................................... GCAACTAGCGGGGTGATTTCAGCTTTTTTCATGGATG 3594418 37 100.0 39 ..................................... GATCAACAACTCCCCCATTCTTTCCACTTCCGACAGTGA 3594494 37 100.0 38 ..................................... TAACTGATACTACCAAAAACCGCTCAATTGTGCGCGAA 3594569 37 100.0 36 ..................................... AATCAATCGGCGTATGGGGCAATACAGGGCATTCAT 3594642 37 100.0 34 ..................................... TTCTCAAGGATGAGGGCTACCGAGCGTTAGGGGA 3594713 37 100.0 35 ..................................... TGACATCCTATCGTAGACACGCTATATTAGAAGAG 3594785 37 100.0 35 ..................................... GGGCTATTAATCATTGATGAATGTAGCCAGGTATT 3594857 37 100.0 42 ..................................... AAACCATTAGTCCAGGGTTTTACTGTAACTGCTACTCTCTTA 3594936 37 100.0 34 ..................................... GAATATCTTTGCTAAACCCACCTCCATCATTGTG 3595007 37 100.0 34 ..................................... TGAGATTTTGAATTTAGGAATTAATCCTGAAAAT 3595078 37 100.0 36 ..................................... AGAAGGATTTTTACAGCCATTTTGAGCGCTTGATTT 3595151 37 83.8 0 ..........T...........G..T.C.....CT.. | GTGG [3595172] ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 99.0 36 GTTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : TCCCCTAACCCCTTCTCCCTCAGGGAGAAGGGGAATTGAATCTCTTGCTCCCCTCTCCTGGTGGAAGCTACGGTGTACACACAAGTCTTAAAATTCCCCCTAGTGCTTGGTTTGATCATCTAACTAATGGTTGTGCGATCGCTCTCGAAGCCTGTCCACACCCAATACTTGTCGGTTAAGGGTAAAAGGGGAAGGGGAAAAGGGGTAAGAAAAAACCTTTAACCCTTACCCTTTCACCTTTTCCCCAAACCAAATTCCAAGTTTAAAATCCTTAACCGAGCAGTATTGTGTCCACACCCAAGAGGAACGACGTAGGCGGAGCCTTCCCGCAGGGTAGCAATCGCAAAAACCACGGGATTATGTGATTACCTCGCTGCGCTCGTAATGACAATTTCAGGGGTCTATAAGGGACTTCCAACTAAAAAAATATCCCGTCGCTGAGTAGGCAGGGGGGCAGGGAGCAGGGAGCAGGGGGAGAAATCGACTTTGGGGCTTCCGCA # Right flank : CCCTGCGGGAAGGCTCCGCCTACGTCGTTCCTCTTCACTGTGGACAGGCTTCGGGAGCGATCGCACAACCATTAGCTAGATGACGAACCCAAGCACTAGGGGCAATTTTAAGACTTGTGTGTATACCGTAGCCTGGTGGAAGAGGGGCACAGGGTGAGGGCGAAACCTTGCAACTAATAGGGTTTCACGTTAAGTTGACACCACTGGTAGGAGCGATCGCTCCTACTCCCCTCCGACTGCTAGGTTAAATTACTTGCTTTCTTAACTACTTCCTTTAACTCTTCAAAGGAGATACTACCGTCTTTATCTCCATGCATAGCTAGCAATTCCTGGGGGCTACTGACACCTGTTTCAGCCGAGATAATTGCACTTAAACCAGGGCTTAAAAAAAGCTCATTGATGGAGATTTTGCCATCTTGATCGATATCCAAGGTATTAAAAAGAGATTGAAGCTCTTGCTCGGTTGCCATGACTTTCTATTAGAATTAATTTTTAAATTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 9 4029045-4029731 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4029045 37 100.0 34 ..................................... CCAATAAATACAGTATTGTAAAGATTGCTTTATA 4029116 37 100.0 34 ..................................... ATTCTGAACAGAAATCAAAGAAGTACTAGCAGAA 4029187 37 100.0 37 ..................................... TTGGACTTCCGCGCTTGAGTCTGAGGTACTTTGGAAA 4029261 37 100.0 34 ..................................... ATTCTCCTAGATTTTCCTCCACTTCCTCAATGTA 4029332 37 100.0 33 ..................................... AAAGTCTCGCTTGCTCCTAAATCAGTAAGAGAC 4029402 37 97.3 34 .......................G............. CCATAGAAATAATTATTAGCTGTTACTTGATTCC 4029473 37 100.0 35 ..................................... TCAATTTATTGAGCAAGTTGAAAAGAACATTAGGG 4029545 37 100.0 36 ..................................... ATTAGTCATTGGGTATTGGGCATGGCGATCGCTTGT 4029618 37 100.0 40 ..................................... GCCTTATATACTGTGGCCCCTTGATATGGAATAGCAAAAG 4029695 37 89.2 0 .............CA.CC................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 98.7 35 GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTATATCCTACGATATTTCCGAAGACAAGCGCCGCACAAAGATTCATAACATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTAAATGACACCCAGTACGCCAAACTGCGATCGCGCTTGCATAAGTTGATTAAAAGCGATACGGACAATATCCGTTTTTACTCTCTGTGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGCGGCGAACCAGTCCCCGATGATACTATTTTCTTTGCCGAATGCGCGGAGGGGTAGGTGTGGAAAAACTAGTTATCCCAAAAATTAGGTGAAACTATTTCTCTGTAAGGCTCTCACAGTTTAATTGATATTCAATCACCCGCGCGCCTTACAGGGATAGACTTTCAGGAATTTTGGTTTTGCGTTTTCACTATTGCCCGTGTTATTATGGCGCTATCCGCGCAACAGAACCTTGAAAACCGCATATAACTTGACTTTTAGGCTTCCGGT # Right flank : CTTAAAACCGCCGCAAGCAGCATCATTTACTAACTTGATTAAAGTTGAAAGTTCACAAACTTATACCATTTTGAAAAAAGAACGCGACAGATGGGTGGGGGCACGGCACCTATAAGATCTTTGAATATACCAAAAGATTGTGGATGCCGTGCCCCTACATGGAATTTATCTGTCGCAAACATTATTTGAATTGGTATTACTCTTTTTTGAGTTTTTTACCATAAGTAAAATAGCAACTCCTGAACGGGTTGCTATTTTACTTAATAAGGCTAGATTTACACTTTATTCCGAATTAATGGTTCAATTTATCATGTTCGTCTTGGGTAACCCGGTAGACTTCCCTATCTACCATATGAATTTCATATACTGCATCTTTGCCTGGGAAAAATAAAAATCCTGGCTCTTTTTCTTCTACCTCTACTATTTCTGAAATTGCATTAGGATTAATCTCAACATGAATGCCATCTGTTGTTGTTAAATCTACAGGTTTCATGTATACC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 10 4092476-4093100 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4092476 37 100.0 36 ..................................... TCTTTTCTCTGACACTTTATAATTTACAAAGCATCT 4092549 37 100.0 36 ..................................... CTCCTTCTGGAACACTAAATATTACTTCTGCATTAG 4092622 37 94.6 38 ...........T.........A............... TCTGATGCTAACTCCATTAGCTTTGCAATAATCGGATC 4092697 37 91.9 35 ...........T.........AT.............. AAGAAATCTACTAGTGTAGAACCATTCATCCTTGA 4092769 37 97.3 39 ...........T......................... CCATCTTCATACAAAGAAACCAGAACGTTTCCATTCTGG 4092845 37 100.0 37 ..................................... AGCTACTGCGCCGAAATCGATAATTGAAGTTAACATT 4092919 37 97.3 36 ................A.................... GCGAATGTGTGACGATTAACGTATGGCTTACGATAT 4092992 37 97.3 35 ...........T......................... ATAAAACTATTACTCATTCCCAAAATCTCAGCGAT 4093064 37 86.5 0 ................A....AT....A........G | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 96.1 37 GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Left flank : CAGCCCCTCTCCCACCAGGAGAGGGGAGTAAGAGATTTAGTTCCCCTTCTCCTGCGGGAGAAGGGGTTAGGGGATGAGGGCGCGAAGGATTTGTACAACGCCTGCCCTATATAGCTTTTAGCTTAAGTTAACACCAATGGGCACTGCCGTGACCTCTAGAATATTATTGATGTGTCGCAAACATTATTTGATTTGGTATGAGTTTTGTATTCGTGCAAGAAGTCTAATTTATTGGGACTAAAAGCTAGACAAGATTTGTAAGTGGTTTTATCATTATGATGAATTTAACAGCTTGATGTTTGGCAAGTCGAAGTGAGGGCGAAAACCCTGGGGGATATGCCAAAATCGCCAGAACCTTGACAAGTGAATAATTACAGCGTTTTAGCAATCAAAAAAGTTGCAAATTAGTTTCAATAAGGTGGGCTGAAAATGATTAAAATTTTCGATCTGCCAAAATGCTTTCCAGGAAGCTTGCTCTGGTTAGGTTTCAATACCGAGCT # Right flank : GGATAAACACCATCTGTCAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCACTTTGTTAAAGAAAGTCTTCGCCTTGTTAAACAAAGCTCTAATTTTTGCAAATACGGTGTTCAAGTGCGATCGCCTCACCAGTCATCAACAATTCTGGGTGAGGGAATGCGATCGCATCACCCTAAAGAGAATGAAAACACTTGAGTAGCAACGTTTCCGCTTGCAAGGCTGATACCATTTTGAAAAAAGAACGCGACAGATGAGTAGGGGCACGGCACCAGTAAGATATTTGATATGCCAAAAGATTGAGGATGCCGTGCCCTTACAAAGAATTTATC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAACCTATTCCCCCGCAAGGGGATTGAAAC # Alternate repeat : GTTTCCACAACTTATTCCCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 11 4349397-4350158 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 4349397 35 100.0 37 ................................... ATAGCTTGCAAATCAACTAGTTCTGTATTCAACAATG 4349469 35 100.0 38 ................................... GGTTATGAGCCATGTAAAAGCTGCCATGTTTTGCCAGA 4349542 35 100.0 37 ................................... CAACTTAGTCTGCCCCAACCTTCGCCTGCTGATATAA 4349614 35 100.0 39 ................................... CTGTCACTTGGACAGTTGATGTAGAATTTCATTTTTTTG 4349688 35 100.0 36 ................................... CTACTTGGAAAAACCATAGTATCCATGCAATGATAA 4349759 35 100.0 35 ................................... AAAGCTTGCTTGCGCTACTACACCTTCCATTACTG 4349829 35 100.0 39 ................................... CACTAAGTTTTTCAAGTCATCGGTTGTACCGTGAAAACA 4349903 35 100.0 38 ................................... CTAAAATTCTTTCCCTTTCTATTTGGGCATCCCTTAAA 4349976 35 100.0 39 ................................... TTGATTTCAAACTTTCAATCAAATTTTCAAAAACATTTA 4350050 35 100.0 39 ................................... AAAAGTGTTTAGCCTGTCAGAAAACATAGCTTCCAAAAG 4350124 35 94.3 0 .............................TA.... | ========== ====== ====== ====== =================================== ======================================= ================== 11 35 99.5 38 GTTTTCAAATCATTACCCCTAACGGGGATGGAAAC # Left flank : TATTCAATTCGGTATATTCAGCAAGCAAAAGTAGATATTGCTTTCTCTCAAGCCGCGTTTACTTATTCAATTCGGTATATTTAGCAAGCAAAAGCAGATATTGCTTTCTCACAAGCTGCTTTTGCTTTCTCCTTTGCGTAATTCCCTCAAAAATATCATTATGACTATGTAACTAAATTTTTTGGCTTTTCAAGTTACAAGTAATTTGTTATACTATGCCCTAATCGACACAGAACCTTGAAAACTGAATATCAAGTTTCCTGTTGAAAACAATAGTGTTTATTTTAACTATTGACACTTAAATTTTTCGCGGGGGTAGGCTAATCTCTGAAACCCTGATACTTTCGTTGACCCCCGCGAAAAGCTTGCTGGGTATGAGTTTGAAGTACCTCAAACTATGTCTGATTGTCAATAATTTATGCTTGTTGACAAGCAAATTAGACCCCCCGCGAAAATGGGTATCTCTAACCCTTTCTGGGTAAAGCTTCCAAAAGGGTAGG # Right flank : CAGCCATGAAAAACTCAGCAAATATTTGACGGTGCGTTACGCTGGCGCGATAACACACCCTACCAAATTACTAAATGTGATAGAAAAATGTTGATATCCCAGCGATCAGTTTTTTGCACATTAAACAGGTTTTTTAACCGCCTTCTGCTGTTTGGTTAATTCGATCATCTCTTCAAAACCGAAGCGATCAACCAATTCAATTAATGCTTTGGCAAGGCGATCGCTTTTTGGGGGAATTTGCTCAATTAATCTCAACACTTCTTTGCTGTTAACTCGCAGCGCTGCTTGATGCAGTTGTTCTATCCATTCTCTCGGCATTACTTCTAAGTCTGCAACTGTTAATGAGTTGGTGGGGGTGGATGCACTATTAGTAGATCCAATTTCCATATTTTGCTGCTGGTTCGCTGCTTGGGCGTAAACGTAGCGCACACCCAAGTGTTCCGCCATTTTGTCAAAGATGATATTTGCCCGGAAGGGTTTGCGAACAAAGTCATCAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCAAATCATTACCCCTAACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 12 5017842-5018900 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5017842 37 100.0 35 ..................................... AAAACTTAAATGATTATTAATAAGTCCTTGTAAAG 5017914 37 100.0 33 ..................................... GGGATTAAGTTACCTGAAGAAATTCAGCCATTT 5017984 37 100.0 33 ..................................... GATAGTAAAATATTCATTACTAGTAGGGACAAG 5018054 37 100.0 31 ..................................... TCTTGCTGATAAACCTCATAGCCCTCTAGGT 5018122 37 100.0 34 ..................................... TGTACATAGCATTAGTAAACTTATCTGTAGCGTT 5018193 37 100.0 32 ..................................... AATAACCGCAAAGACATCACCAGAAAAGTTGT 5018262 37 100.0 39 ..................................... TAAATCCCCGACTGAAACTGATGCTACGTATAGACGCAG 5018338 37 100.0 35 ..................................... GCGCTGACTAAACTTATTGAGCCATAAAACCTCAG 5018410 37 100.0 41 ..................................... GCTCTACTCTCTTAGGTGCAACTTGGTAGGCAGAAGCCATC 5018488 37 100.0 34 ..................................... TATCTGCAAGTCACTCAAAGACATGGACGTAGAG 5018559 37 100.0 34 ..................................... AGAATTACAATACTGTGCTTCTAGCGAGTATCTT 5018630 37 100.0 42 ..................................... TCTATAAGCCACTGTGCATATTTACTGTGTACATCCTTGCAC 5018709 37 100.0 40 ..................................... CTACAGAGATCGTGCTGGGGTATGGTGGTTTACGTTTAAA 5018786 37 100.0 37 ..................................... TAGCTCGGAAAGGGACTAAATAACCGGAATTAATAAG 5018860 37 94.6 0 ...........................A........A | ACT,T [5018889,5018897] ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 99.6 36 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GATATGGCAGTGGCATTATCCCTACTAAACACGCTGTACCTCTCAATCATGAGAATTCTACTAATCCAGGTATGCAAGATAGCAGTACTAATCAGCCGAGAATATCTTCTTCCCGCAAGCAACCGTCTTCTAATCTGATTAATCGCATCATGCGTTCATTTACCAAACCCAAAGGTGTTAAAAAAAGAACAAGAAATTAAATTCCATCTTGCTTGAAACTTGGTAGAGTATAATCTATCAGCAAAACTCGTCAGGTTACTCTTGCTTCCCAGATGCGCGGATGGGTAGGTGTGGAAAATGTAGTCTCACTCAAAATAGGTGAAACCATTTGTGTGTAAGACTTGCACCTATTTCTTGATGTTCAACCACCCGCGCGCCTTACATAGAGAAACTTTCAGTCATTTTGGTTTTGCTTTTTTGCGATCGCCTATGTTATCATTGCTCCATCCGCGTAACAGAACCTTGAAAACCGCATATACATTAGCTTTGGAACTTCCGCT # Right flank : AGTAAATCTTAAGTAGGGTGTGTTACGGCTATGAAAGGATTTCGGATACAGAGACAATGATATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAGTTATTGCGTGACAAATTATATTGAAAGTCAGCGCCTAACACACCCTACAGTAATTTTATTTTTACTTTATAAATAACCTCTTAAGTAGGGTGTGTTACGGCTGTGAAAAGATTTGAAACTTAGAGAAAGATTAGATTTAGCCGTAACGCACCGTCGCGTGGATGGTGCGTTAGGCGCTAGGATAATTATTGCGTGAAAAATTATATTGAAAATAAGCGCCTAACACACCCTACAGTAAAATTTTACTTACTTTCTTCAGGATTAAAACCCTTTGCTTTCAACCAAGAATAGATGATAAAAATGAAGATGAACGCTATAAAAAAGCCCGCACAAGCGGGCTTTTAATTGATTACCAAACTCTACAAATTGCCTATTACCTTATGCAACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 13 5227480-5226798 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5227479 37 100.0 35 ..................................... GCCAGCAAAAGAGCCAAATAGGGATGCTATAGAGA 5227407 37 100.0 34 ..................................... CAGTTTTACTTCTCGGCTTTTGATTCAGAGACTC 5227336 37 100.0 36 ..................................... CATTTTCTTACTAGTAGCGTACAGAATAACCGATAA 5227263 37 100.0 36 ..................................... AACGAGGAGGTGAGCGAGTAAGAAACTAGTTAGGGT 5227190 37 100.0 37 ..................................... CTCTCATGTAAGCGATCGCTAGTTCCAAGGCTTCAAA 5227116 36 97.3 33 .........................-........... TTCGACCAAAACGCCAAACCCAAGCTAATAGTC 5227047 37 100.0 34 ..................................... CAGCAGTTAAAACTCGATTTATTTTTAATGCCTC 5226976 37 91.9 33 ........T...T...............A........ CTGTCTTCTAAATGTGTTTATGCAGAATTTTAG 5226906 37 78.4 35 ........TT.T......A..C.....A.T......T ATATTATATGCAAGTCCACAAAGTGAATCACAGTT 5226834 37 70.3 0 C......GTA....TG.......TA..C....A...T | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 93.8 35 GTTGCAACCGTCCTCTCAGCAATGGGAGGGTTGAAAG # Left flank : CAAAAGAATTAGCACTTTCTACCTACCATAGCCGCCTAGCTAGGTGACATTGACAAATATCTGAACCTTGACAATAAAATAATCAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAAGTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGTCAACTGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTCAATCACCCCCGACCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAGAATGGTCAAAATTCCGCTCTTGGTTCGCGCAAGTTATGAAAACCTTATACTACAAAGAATTTAGTCATAAATTTCTTTTGTAGATAATTGAAAAATTACATCCTGGGAGGATTTTTGAGAAGGTTAGCTCAAGCTGGGTTTGAAAACCCTTCTAGACAAGGGTTTGAGATGACAGCA # Right flank : TTTATAAGCTATTCCTGATGCTCGTGGTTTTCTATTGAAGCGTTTCTCGTATTAAGTTAAAGAACGGGTATAGCAACAATTTTGAAAAACTTTAGAACGTTTAATAATTTAATAACCCCAAGTATTTAGGATAAAATAATAAATTCTCTTGTTTGTGTGGGTTGAAAGCAAATCCGACTGCTGGCTTGATATCATATAGAGTAAAGCCTACATAACTCATGAATTCTATATTAGATGACATTAATTTGTCACTATTTCCCTACAAAGGCTTATCTAGTTTCAGCGACATTAATTTGTCTTCAACGACAACAATTTGTCACCGACGACAAATAATTAGTCACTGTACATTTGCGAATCGCGACATATAATGTACGAATGTAAAATAAACATAAAGCCAGCAGTCGGATTTGAACCGACGACCTTCCGATTACAAGTCGGATGCACTACCACTGTGCTATGCTGGCGGGCTGAGGTGTTGCTCTTAAGCACTAACCGATTTC # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGTCCTCTCAGCAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 14 5295947-5295318 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5295946 37 100.0 36 ..................................... AAATATACATCATGAATGATAACACCAAACTAGCAA 5295873 37 100.0 38 ..................................... AACCTCCCACTTCCAAATCCTGCCACCTGCCTTATAGT 5295798 37 100.0 34 ..................................... ATTGGTGTTAAGTCTGGCGTAATGGTAGTTGGTG 5295727 37 100.0 41 ..................................... ACTTAACGGGGTTCTGCCATCAGCACCATGTGAAAGGGACA 5295649 37 100.0 33 ..................................... AGATCAATTGAGGCAGCGCATTGAATTGATGAA 5295579 37 100.0 37 ..................................... ATAGTTACTCTAGACTTAAAGAAAGCTAACAAAACTA 5295505 37 100.0 40 ..................................... TCCCTTCCGTTGATACCATTTATTCCCGGTCTACCATCTC 5295428 37 100.0 38 ..................................... CAGAGATTTTACTGTAACCAGTGCGATCGCACCTTCAG 5295353 36 89.2 0 ............................-..AC...A | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 98.8 37 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AGTACAATCGGAAGTTATGCCGCAGGAATTTGCCAAGCTAACAGTGCCAACACTGTTGGTAGCTGGGGAGTATGACAAGATTATTCCTGCTGAGATGGGGCGACAAGCTGCAGCGATGAATGAAAAAGTTGAGTTTGCCATGCTTCCTAATACAGCGCATTTCCCAATGTTAGAAGATGCTCCAACTTATCTACGACGGGTGGGGGAGTTTTTGCAAATTCCCACAAAAGTTGATTAAAGTTGATGTCCAATCTGACAACTTTGGTTGCAGAATGCGCGGATGGGTAGGTGTTGAAAACTGCATTTATATATAAAGCGCTGAAACTCCTTATCTGTAATAATTTCAAAGATTCATTGCTGTTCTATCACCCGCGCTCCTTACACAGACTGACTTTCAGCGATTTTGGTTTTGCTTTTTCTTTATTGCCTATGTTATGATTGACCTATCCGCGCACCAGAACCTTGAAAACCTTATATTAGTTGACTTTCAGGCTTCCGCA # Right flank : TTAAGAATAACCTATCCCACTATTTTTAAAACCTCTAAATCTAGTTGTAAAAAATGCCTAAAAACCTTGATTTTTCGTTTTTAATTCTCAACTCAGTCTAAGTTTTCTAGCGCAAATATTATTAGTGGGATAGGTTCAATTAACCCAAACCTAATTCTCGTTTCAATAAATTGATGGAATTAGTACCAATATAATTATCAACCTTAATCAACTTGGGCGGACGAATGATGTCTTCTACCGCCGCTTGTACAGCAGCTTGCACTGCTGCATAACTTGCTTGATCGCTGATAATTACCTCGGCTCGCTTGACGATCGCCTGAAGTTTGTAAGCATCTTTTGGTTGGGTTGTCATTACCAATAGTTCATCTCCCCGGAGTCCGTGAAGAATCACTTCGGCGGCGCGCGCAATTCCAGAACTTAAGCTGACTATGCCCACACAGTTTTCTTTGGGCAAGGTTTTCAACAAATTAAGTTCTTTAGAATAGTCGTAGATATCCAGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 15 6102998-6104834 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================= ================== 6102998 37 100.0 34 ..................................... AAATCTTCCCATGCACGTAATTTGGTAAGAGCTG 6103069 37 100.0 40 ..................................... ATTTGCGTAACTATGATGAGCTTTACAGGTGGGGAGGGGA 6103146 37 100.0 31 ..................................... CGCGTGGCCCGCGTGGAGATATTGGTATCGG 6103214 37 100.0 35 ..................................... AACAAGCGCTCAATATTGGCGGTAAAGCCTTACAA 6103286 37 100.0 35 ..................................... ACCACTCTTTTAGATAGGTGCGATTTCGCATTTAG 6103358 37 100.0 39 ..................................... TTTTATATGCTCATACCCTTAGGGTATGAATATTTTTTA 6103434 37 100.0 39 ..................................... GATTCGATGTCGCCCGCGAAAAATACATCAACGCCGGTG 6103510 37 100.0 36 ..................................... GCTTTCAGGGGCGATCGCTACAGAGGGGGCGGCAAC 6103583 37 100.0 34 ..................................... AAGTGGAACTAGTATTTATTTTCCAGTTATTTTT 6103654 37 100.0 36 ..................................... GATGGCGAACTCCCAGAAGAGTATTTGCATTTTGAA 6103727 37 100.0 33 ..................................... TTTTGGGCGTTAGCCCTCTGCGCCAAACCAGAG 6103797 37 100.0 33 ..................................... AGGGTGATTCTTGCGCTTTCATACTGGGTTTTA 6103867 37 100.0 38 ..................................... AGCCTGGCAATACCTATCAAACGCAGTGTTACGAAGGC 6103942 37 100.0 34 ..................................... GGATTTTTGAAGAAGACGAGTGCTGGATGATTGG 6104013 37 100.0 46 ..................................... CTGAAAGAATATGGACTACGCGCATCCTTAAGGGCACCGAGGCCAA 6104096 37 100.0 35 ..................................... GCGAGGGCTATAAGTGGGCAGAAATTTACAGCTAG 6104168 37 100.0 173 ..................................... TGATATTTAATTTCTCTGCATATTCCCTAGCCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAGATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATGTTACTGGTGCCGTGCCCCTACCAACCCATCTGTCGCGTTCT 6104378 36 78.4 173 T...C..AA.-.G.A...........A.......... TGATATTTAATTTCTCTGCATATTCCCTAGCCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAGATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATGTTACTGGTGCCGTGCCCCTACCAACCCATCTGTCGCGTTCT A [6104391] 6104588 36 78.4 173 T...C..AA.-.G.A...........A.......... TGATATTTAATTTCTCTGCATATTCCCTAGCCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTGGCGACAGATAAAGTCTTTGTAGGGGCACGGCATCCACAATCTTTTGGTATATCAAATTATGTTACTGGTGCCGTGCCCCTACCAACCCATCTGTCGCGTTCT A [6104601] 6104798 36 78.4 0 T...C..AA.-.G.A...........A.......... | A [6104811] ========== ====== ====== ====== ===================================== ============================================================================================================================================================================= ================== 20 37 96.8 58 GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : GGGGAACGGGGCNGGGGGAAAGGTACAAACCTTGCCCCTTGTGGGCAAAAGCCCCCTTGCTCCTTTTTCTCACTTGGTTGAAGCCCCAACGCCAGTTCTCTCAAGTCGGCACAGCCGCCCACGAGACTGGCTCCCCCTTGTGGGTGGTTTTTCTCCCCTGCTAAGAGCTCCCTGCTCCCCTGCTTCTTCACGTTTTAGCCTTCCCTAATGCATTGGCTGTGCTGCTAAGATTGAATATCAGCCGCCCGCAACCATACTCTTTTCTTGCCAGAATGCGCGGATGGGTAGGTGTTAGAAAAGTAATCTCACCAAAAACCGTTAAAACTATTTGTATATAAGGCTTCCACCGCTTTATTGCTTCTTAATCACCCGCGCGCCTTACAGGGATTGACTTTCAGCTATTTTGGGTTTGCTGTTTCATTCTTGCTTATGTTATGATTGCACTGTCCGCGCAACCGAACCTTGAAAACTATATATACATTGGCTTTGGGGCTTCCGCA # Right flank : CTGATATTTAATTTCTCTGCATATTCCCTAGCCTGGTTGAAATTTCACCTAATACCAATTTAAATAATGTTTGCGACAAATAAAGTCTTTGCAGGGGCACGGCATACACCACCTGTGTCAACTTAAGCTAAAAGCTATATAGGGCGGGCGTTGTACAAATACCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCCTTCTCCCTGTGGGAGAGGGGCTGGGGGTGAGGGCGAAACCTTGCACAAGAGCGGGTTTCACATTAAGTTGACACCAGTGGGCATACACCACCTGTGTCAACTTAAGCTAAAAGCTATATAGGGCGGGCGTTGTACAAATACCTCGCGCCCTCATCCCCTAACCCCTTCTCCCGCAGGAGAAGGGGAACTAAATCTCTTGCTCCCTTCTCCCTGTGGGAGAGGGGCTGGGGGTGAGGGCGAAACCTTGCACAAGAGCGGGTTTCACGTTAAGTTGA # Questionable array : NO Score: 7.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:-2.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 16 6513534-6512779 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 6513533 35 91.4 37 T...T........T..................... ACAAATTTTCGGAGCGGTGGTATACGCAGTTGAAACT 6513461 35 97.1 39 .............T..................... TGTGAGTGTTAAAGGCTTTAACGCCTTTGCAAGCTTTGA 6513387 35 97.1 40 .............T..................... AAAAAGACCTTGAGGCCCAGAAAGCTGCTATCGAACAACA 6513312 35 97.1 36 .............T..................... TGCATATGCACAAGCGTGGAGCAGCAATTCAACTTT 6513241 35 97.1 38 .............T..................... GGAATATTCTATTTCGCTTTCCTAAGCAGTGTAGAATT 6513168 35 100.0 34 ................................... TCTTTGAAAAATTTGCAGAGGAGTTTACGTTTAT 6513099 35 100.0 37 ................................... ATTTAAGTAGAGTATTGTTTACTGCAAAAGCAATAAT 6513027 35 100.0 35 ................................... CTTATATGGCTAATTCTATTTTTGCTTTTCGGATT 6512957 35 100.0 38 ................................... AAAAATCCTTTACACTCTTATAGGTTCCGTAGGAACTA 6512884 35 100.0 36 ................................... AGTTAATTCAGCCAATCTGCAAACTGGTAAGGAAAT 6512813 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 11 35 98.2 37 GTTTCCATCCCCGGGAGGGGTAATTGATTGAAAAC # Left flank : ATTTGTACATTCATTGTTATCTTTCCGAATTAAATACTGTGTAGAGAGTTAGTTCCGGAAAGGTGTTATGGGCTGATTCACATAGCCGAAAATATTTCTCGTTGCTCTAAACATAACACTTGCATCTGTGATGAGATTGATGAAACTTTACAAGTGCTGATCACCACAAGTAAATATCTTTGTAAGCTATACAGCTAAGTGATTATGGCTTTTGATTTAACCTAAAAAATTTAATTATTATCTGGAGTAGTTTCAATCATAGCCATAGAAGGTAATACAAATTTAACGGTATTATTTGGTTTGAGGGTGTACTACAGATAATACTAAAAAGTTTCTTCTTGATATATCTTTGTATTTCTTTATATATTTCTTGAGATTTGACAGTTTATTTACATCTATAAAGAATGCGATCGCATCCCCACACTCTCACATTTTCTCTTCCCCTTAGTTCAAGTCATGCTGCAAAATGCGATCGCACTACTTCCCCTAAAACTCTCTGC # Right flank : CCTAACCTTGTAGAGAGCTTACTGAATAAGGCTTACAGAACCGTAAAACTGAGAGGGGTATGTTTCACCTGTCAACAAGCCACATTTATTGACAATATGGACAGCCTTCAAGTAACTCAAACCCTTATAGAGTAAGTCATCTGAGGGGGTCTACGCAAGAATCAGCATTTGAGCTTTTGCACGACCCCCTCAGGTTACATTTTTTAACACAATGGCTGAAGGAAACTAACCATGAGGTTACAAGCCAAAGATATATATTTATTGAATTTTCAAGGTGCAGCGATTGGTATAAATAGTAGCATAGCCAATTCTGCAAGGCAATCTCTGCCTCACAGCAATTTAATCAGCAAAAGCAAGTATTGCTTTCTTCAAATCTCCTTTTGCTTTCTCAAAAGCTGCTTTGGTTTTCTCATTTCAGTGTATTTAGCAAGCCAAAGCAGATATTGCTTTCTCAAAAGCTGCTTTTGCTTTCTCATTTCAGTGTATTTAGCAAGCCAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGGGAGGGGTAATTGATTGAAAAC # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAATTGATTGAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 17 6819217-6820595 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================ ================== 6819217 37 100.0 35 ..................................... AATTAAATTTTTCGCATCAGCCCCAGAAATCAGAT 6819289 37 100.0 34 ..................................... ACCCCACCATAAACCACAGCTCCACGAATCAACC 6819360 37 100.0 37 ..................................... TAAGCAGGGGATAAGATTCAATCCCGAAACCTATCAC 6819434 37 100.0 35 ..................................... TGCTAACATGATAGTCCCATGCGGCATTTCTAAGT 6819506 37 100.0 35 ..................................... TAATATTCTTTACCAGAGTGAAATATTAGTTCATC 6819578 37 100.0 43 ..................................... GATTCATCCTATCCTCACGGTAACGGGTACACCATTCACACTA 6819658 37 100.0 38 ..................................... ATACAAGTCCCAGCATCCTGCAATGATGAACTCATTAC 6819733 37 100.0 35 ..................................... ATTAGCTATGAAAGGAATACTGCACGGGTTTGGCA 6819805 37 100.0 34 ..................................... GAGGTTGCGCCTGCATACCAAACCACCCTACGGT 6819876 37 100.0 39 ..................................... TGTTGGAGGTGGGAGAAAAAAAGCCACAAGTCCAGAGCC 6819952 37 100.0 36 ..................................... AATAAAATAGCCCTCACGCGAGGGCTATTGCTTAAA 6820025 37 100.0 34 ..................................... CAATCGCCTCATCCTCGACCAAAGTAATATCCAC 6820096 37 100.0 31 ..................................... GTACTTTTCTCTGCTTTTCATGTATGTAGTG 6820164 37 100.0 36 ..................................... AGTGCAAAGCCCCAAATATTCTCATTGAATCTTGTA 6820237 37 100.0 35 ..................................... TTAACTAGAGTGAATCCATCAGGGACGCGATCGCC 6820309 37 100.0 208 ..................................... AATGTCGCACAAGTTTTTAGCACATTTGTTAAGCTCGACTTTATCCATTCAGACATTCTACTGTAGGGTGTGTTAGGCGCATATTTTCGATATGATTTGCCACGAAATAATTATCCTAGCGCCTAACGCACCATCCATGCGGCGGTGCGTTACGGCTAAATTTTGTTGTCTCTTTGTCCAAAATCCTTTCATAGCCGTAACACACCCT 6820554 37 81.1 0 .C..A....T....A...GT..T.............. | G,TTT,G [6820560,6820567,6820576] ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================================ ================== 17 37 98.9 47 ATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : AAGGGTTATTGTCATGCTCTTTAAAAGCGTGAATGCCTAGTTGCTGGTCGTTAGAGTTTGCCCTTTCCAATGTATACCAGATAGACTATGACAAAAATTTTATGGCATTGACAATACAAATACAGCTAGTTGCAAGTTGCTAAGGTAAGACTATGCAATTTCAATGCTTAACAGCTTATTGGGTGGAAGTCTTGCTGATTTTTTCGAGTGCGATCGCCTATCAAATGCTCAAAGCGTTTGTTAGAGTTGAAATGCAAAAGATTTTTTAGCTCAATGCGCGGATGGGTGGGTGTAGAAAATCTCTCTGTTGAACAAATGGTTGTATTCCTTATAGGACAGTCTGTTGGAGAAAAATTAAATTAAAACCATGCGCGCACTTTACCCAGCTTTAGTTTCAGCATTTTTAAAAAAATCAATTGACATTTTCATGTGCTATGATTAGCCCATCCGCGAAACTGAACCTTGAAAACCAAATAGAGATTAGCTTTCCGGCTTCCGGG # Right flank : CGCTCTCATCATCTCTGCTCGTTCCTATGGTGCTGAATTATATATAAGACTAATCTTTAGTGCAAAAGAATTCCTATCTTTGAGCTCTGCAAGATATTTGACTTTTAAATAAGTAGAGCTAATATGTTTTATTACATTTACAAAAGTTAAAGTACTTGATTAACTTTTGTAAAGCAGTGTAAATTACTCACATAGGCAAAAACACGCCTAATTCATACATACATATAACCGCAATCATAAAACAATGACAGCAACCTTACAACAGCGCTCGAGCGCTAACGTATGGGATCGCTTCTGCGAATGGATCACCAGCACCAATAACCGTTTATACATCGGTTGGTTCGGTGTCCTCATGATCCCAACCCTACTAGCTGCAACCGCTTGCTTCGTAATCGCATTCATCGCAGCGCCTCCAGTAGACATTGATGGTATCCGTGAACCTGTTGCAGGTTCCTTAATCTACGGAAACAACATCGTCTCTGGTGCAGTTGTTCCTTCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 18 8354535-8354792 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018248.1 Tolypothrix tenuis PCC 7101 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8354535 37 100.0 40 ..................................... ATTGCTTCGCCTATAGCAAAAACAAAAGGAAACAACATAG 8354612 37 100.0 34 ..................................... TCAACCACATCAGCTATATAGAACACTTCATGGA 8354683 37 97.3 36 ....................................T CATACCCGTGAATCGCTCACTCTTCACAGGCTTCAA 8354756 36 81.1 0 T...-......TT.......TT........T...... | C [8354762] ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 94.6 37 GTTACAGTTACCCTTACCCCGCAAGGGGATGGAAACA # Left flank : AAGTTAACCGAGAAGGAACCGAAGCAAGCTAGTTCTCTCCATGAGGGACAGGTGGTGAAGGTGAAAATTTCGGCTGTTAAGGATGATGGGACGATTAAAAGCGTAAAGTATGTAAGTTAACTCAGTATTAATGCTTTAAGTTTTTTATAGGTAAGGCTTGACGAATATATATCTGTGAATCATATTATTTACATTGCAAATTTTTAGTTAAGTCTTACGTGCTTTCTCTAGGCTTAATAGAGAACAGAACCTTGAAAATTGCATAAATATCTTGGTTGTTAGGGTAGATTTCCATACTACCCTGAAAGGAAAAAGTGGTTTTGCGGCCGGGTTACCAAATCGCTGAAACCCTAGTTTTTTCGTAGACCCTGCCGATTGCTTATTCTGTAAGGCTTTCAGGGATTTTTTCTGGTTATTTTTGGAGGGGAGAAAAATAAAATGAGTACCCCGTCGCAAACCGCCTCTGGAAGCTATGGGTGATAAGGGTTTCAAAGCGAGGG # Right flank : AATTGAAATTCAGCACTGAAGTCCTTGCTACGAGACGGTTTTTCAGAAGTAATTTTTGTATTGCGTGCGGTGTTTACTGTTTTTCAAACCCTGAGTGTTACTGCTCTGAAGAATGATGGAAGTATTAAAACTGTGAAATTGATTGATTAATAATGAATTCTTACTACTAACTTCTTCTTAGGTCTAATAGTATATAAAGTAAGGCTATCTTAGCCAGCAATCTTTATAGGAACAAAACATGAATCAACAAATAACCACATACTTGGGTGAATCGCCCCCTGTTCTAGCATTAAGCTCAACTGAATCAACTTTTCAAGCAGCATACAGTACGAAGTCTTTAATAAATAGGAAATTATTATACATGGCAATCGAAGTAGAGTATATAGACGAGTTCGAGCAGTGGTACTTAACGCTTGGCGAAGCAGAACAAGACTCTATTGATGTTGTAGTAGAGTTGCTTGAGGAAAGAGGTGTGAATCTTCGCTCCCCCTATAGCACAG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTTACCCTTACCCCGCAAGGGGATGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //