Array 1 162683-161328 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGSO010000024.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate Vulture-STm-CyP-9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162682 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162621 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162559 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162498 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162437 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162376 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162315 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162254 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162193 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162132 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162071 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162010 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161949 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161888 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161826 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161723 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161662 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161601 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161540 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161479 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161418 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161357 29 96.6 0 A............................ | A [161330] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGCGGGCTGATTGGTCTGCAACCA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 148-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGSO010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate Vulture-STm-CyP-9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 147 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 86 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 25 25 86.2 0 .........................---- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : A # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17589-16279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGSO010000025.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate Vulture-STm-CyP-9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17588 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17527 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17466 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17405 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 17344 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17283 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17222 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17161 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17100 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17039 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 16978 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 16917 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 16856 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 16794 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 16733 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 16672 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 16611 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 16550 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16489 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16428 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16367 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16306 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //