Array 1 3304370-3305680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067013.1 Pseudomonas balearica strain FDAARGOS_1013 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3304370 29 100.0 32 ............................. CTGGCCGAACTACTGGGCGTCACGCGCCAAGC 3304431 29 100.0 33 ............................. CAGCTCTCCCTTGAACTCAACTTTCTTTGTATT 3304493 29 100.0 32 ............................. CCAGTCAGTCAAGCGGCGCTCGATTCGCTCCA 3304554 29 100.0 32 ............................. GTCGCAACGCCGCCGAAATCGCCTCAGCTATC 3304615 29 100.0 32 ............................. GCGTAACCCATGGCCTCCAAATTACTTCGCAC 3304676 29 100.0 32 ............................. TCAGAGCCGCTGGTGATGGTGAATTCAAGCTC 3304737 29 100.0 32 ............................. CCTCCAGATACGACGTCAACAATTCCGCGCCA 3304798 29 100.0 32 ............................. CATTCGGACTTGGTAACCCATGCGAACGAGGT 3304859 29 100.0 32 ............................. ACTAGCCGCGCCGCATCGTTTCCTGCGTTAGC 3304920 29 100.0 32 ............................. TAACGTTGCCGAATCTATGGTGCATGCGGGCC 3304981 29 100.0 32 ............................. CCATCGGGGATGCTGCGACGCCAACGAGCAAA 3305042 29 100.0 32 ............................. CCCTGCAACAGCTCGGGATCACGTTCTTGGAA 3305103 29 100.0 32 ............................. GCTTATCCAAAGCTCTATTGCATGAGCAGCAC 3305164 29 100.0 32 ............................. ACTGCGAGAAGTTCATCGGTATCGACCTTGTA 3305225 29 100.0 32 ............................. CCCTACCGTGTGCGAGATGAGTTCGCAGACTC 3305286 29 100.0 32 ............................. CCTGGCGAGTCCTTCATGCGTCACGGCATTGA 3305347 29 100.0 32 ............................. ACAACTCCTGCCTAGCGCCTGCCGGGTATCGG 3305408 29 100.0 32 ............................. ATATCGGGCCGCATTGTCGGCAATGCGCCCGA 3305469 29 100.0 32 ............................. CCAGATCCAGATCACTAGCCTCAACTGGCCAG 3305530 29 100.0 32 ............................. CCGAGCGCGGCGGCGCAGAACTCGCTGCAGAA 3305591 29 100.0 32 ............................. CGCGCCAGGGCGCGCTGTAGGTCGGCGATGGG 3305652 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TGGGTGGTGCCGGCTACGTCGAGGAAACCATCCTGCCGCGCCTCTACCGCGAGGCGCCGGTCAACTCCATCTGGGAGGGCTCGGGTAACGTGCAATGCCTGGACGTGCTGCGCGCACTGTCGAAGGAGGCCGGTGTGCTCGACGTCTTCTTCGCCGAGCTCGGTGACGGCCAGGGCGACCGCGATCTGGCGGCGCATATCGCCCGCCTCAAGCGCGACCTGCACGACACCGACGACATCCAATACCGCGCCCGCCAGCTCACCGAAGACATGGCCATCGCACTGCAGGCCAAGCTACTGCTCGAAGCCGGCAACAGCGCCGTGAGCGACGCCTTCATCGCCAGCCGCCTGGCCACCAGCCGCCGTGCCTACGGCACCCTGCCGCGCGGCATCGCAGTGCCGCCAATCCTCGACCGCTCCAGCCCGGACTGACCGACCGGCAGGCGCGGTAGATTGCGGCGATAGGGATTTTCCATTGCCCATCAGACGCTTACGATTGGA # Right flank : GCTGACGGGCCTATAGTCACGAGTTTCCTTGGCATACATGAAAACTTTACCTGTCCGCACGTCCAGTATTCCGCCATGGCGCGGCAAGCCGTTAGGCTGCGATATCAAATGGCTACCTTAGGTCTTGCCAGCAAACGGGTGAGACACGCTTTCAGGGAGATAGAAAGTGACGGTCCCATCTTTCTTTGCTTATTGGGGAAAGGCATCCGCGCAGGGTGAGAGTGGCGAGCGCTTTCACCTTTTGCCTTTTCATTCCCTTGATGTGGCGGCCTGCGGCCAGACTCTGATTAAGCTGCCGCATTTTTCCCTGCAGCCTTTGGCTCGTGAGCTGGGCTGGCCGCTGAGCCAGGTCGAATCGCTGTTCGTGCTGTTCCTGGCACTGCATGACCTGGGTAAGTTTGCCCGATCCTTCCAGGGGCTAGTTACCGGCCTTTCCCCCGATTTAGTTCCGGCAGACCGTGACAAGCCCTATACGAAGCGACACGACACCCTGGGCTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3315521-3318298 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067013.1 Pseudomonas balearica strain FDAARGOS_1013 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3315521 29 100.0 32 ............................. ACCTGCCGCAGCATCGCACCGAGCCGGCAGAT 3315582 29 100.0 32 ............................. TGCGTTGACGAAGCTGGAGAATGTGCGGCCCT 3315643 29 100.0 32 ............................. GCCGATAGCAACAGCAGCGGTGCTGCCCTCGG 3315704 29 100.0 32 ............................. GATACCCCACCCTATCAGCGACCTTTGATACC 3315765 29 100.0 32 ............................. CTGAACCGAGGACGGATATGACGGAGTGGATG 3315826 29 100.0 33 ............................. GAATTGGAAAGGAGATTGAGATGACCATTGATA 3315888 29 100.0 32 ............................. TCGGGCACGTACCAGCCGTGGCGAGTAGTGAA 3315949 29 100.0 32 ............................. CAGTCGCCCGCGGCCTGTACGAGTCGCGTGAA 3316010 29 100.0 32 ............................. TCACCTTCGGCTGCGACACCACACGGGCGATA 3316071 29 100.0 32 ............................. GCGTCTGCAGACAGACCTTCCGAGATGACATC 3316132 29 100.0 32 ............................. CTTACGACCAGGTGGCCAAGATCGCAGCTGAG 3316193 29 100.0 32 ............................. GCGATCAGTCACCTGCTCGAGCGCCGGATCAT 3316254 29 100.0 32 ............................. GAGATGGCGAAGCCGTAGCGCTGCATAATCGG 3316315 29 100.0 32 ............................. TTGCCGTTTTGGTCTCACTCGAATCAGAGACG 3316376 29 100.0 32 ............................. GTCAGCGTCACTTGGCCTTGCTTGCTGTACTC 3316437 29 100.0 33 ............................. CCATCCAGTCGCCTTCCCCGATCTCGCGCCACT 3316499 29 100.0 32 ............................. TCGGTGATGCCGTCGGCGTCCGATTCGTCTAC 3316560 29 100.0 32 ............................. GCATCACCCAGCGCCAACTGCACCGAGCGCGC 3316621 29 100.0 32 ............................. CTGATCGTCGCGGCTGGTGGCCCCACGGCATG 3316682 29 100.0 32 ............................. AAAGTCCCCTGCCCCGGCCCCCTCAGGGGGCC 3316743 29 100.0 32 ............................. ACTCAGATCGATATCACCTATGGTGATAACTA 3316804 29 100.0 32 ............................. CACCCCAGGCGCTTGAGGATAGGCACATGCTC 3316865 29 96.6 32 ............................T GTCCGTAGGTCCTCTGATTCTTTGCTGGATGC 3316926 29 100.0 32 ............................. CCAGACCGGATAAACCACGCCATTGACCTAGA 3316987 29 100.0 32 ............................. TTTAATATCATTAGTTCGTCTGGCGGTCTTTG 3317048 29 100.0 33 ............................. GTAAATGCTGACGGATCGAAGGACACAACTACC 3317110 29 100.0 32 ............................. AGAACGCGATGGGAGCAGCCTGCCCTAAATGC 3317171 29 100.0 32 ............................. GCCGGGCGCTTCCCGAAACAGGTCCGACTCTC 3317232 29 100.0 32 ............................. TAACAGCAACCACCACCCGCCAGCCTCACCAG 3317293 29 100.0 32 ............................. GTGGCTTCTTTGCCGGCCTGTTCGCTCTCAAC 3317354 29 100.0 32 ............................. GGTTCATAGGCCCAGCTCCTCATCGATTACGG 3317415 29 100.0 32 ............................. TCGCTCCCGGGCGTGTTGTGGTTGAGCTCGCG 3317476 29 100.0 32 ............................. GCCCGACCGACTGGAACGACTATCACCTCGCG 3317537 29 100.0 32 ............................. CCATCGGCGCGTCGGCCATTGCTGTTGTCGGC 3317598 29 100.0 32 ............................. TCTGGCGGATTCATCGTCTCGATAACGGACGC 3317659 29 100.0 32 ............................. TCTGTCCGCTGTGCGGGTTGCGGCGCCTAGAT 3317720 29 100.0 32 ............................. TTCGCCCAGTGCTGGTCCCGGTGGCGGCATCC 3317781 29 100.0 32 ............................. CTCCGGGGCCGATTTAATGTAGCGTTGATTAT 3317842 29 100.0 32 ............................. TCACCGTTCGCCGTTCGCTCACGAAATTCACC 3317903 29 100.0 32 ............................. CTGTTTGGCCGCCCGGACGAGGAGGGCAAGGA 3317964 29 100.0 32 ............................. TCCGCGTCGAAGGCAACCCAAGCCGGGTAGGG 3318025 29 100.0 32 ............................. GAGATGGCGGCACAGGGTGAATTGACGGCTGA 3318086 29 100.0 33 ............................. GACATGAGCCCTGCGCTCGACCAGCTCGAGGCG 3318148 29 100.0 32 ............................. GCTCGTGCCGACGCGGCTCAGGCCGAGGCCAT 3318209 29 96.6 32 ................T............ GCTGGCCTGCGCCGGTGGATGGGGCAGGTTTC 3318270 29 89.7 0 ..........................TTC | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.6 32 GCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGGCCGCATCATCCCGCTGATCGAGGAAGTACTCGCCGCTGGGGGCATCAACCCGCCCGAAGCGCCGCCAGAATCCGTTCCGCCGGCCATTCCCAATCCGGACAGCCACGGCGACGTCGGCCACAGGGCGAAGTAATGACCTTTCTCGTCGTCGTTACCGAAAACGTACCGCCGCGCCTGCGCGGGCGGCTGGCGATCTGGCTGTTGGAAGTCCGGGCAGGTGTCTACATCGGCGATGTCTCGAAGCGCACCCGCGAGATGATCTGGCAGCACCTCGAAGCCGGATTCGAGGACGGCAATGTCGTCATGGCCTGGGCCAGCAAGAGTGAATCCGGCTACGACTTCCAAACGCTCGGCCCCAACCGCCGCGAACCCATCGACTACGACGGCCTTAGATTGGTCGCTTTCCAGCCGCCGCAACCCCCTGATCTTTAACAAAAGAACTCGGTAGATTTTTCGTGGCCGATTTTCTTCTTGTAGGACAATCGGTTACGTTTGGT # Right flank : CAAGAGGCTGGCGACCCCGTGTCTACCTCGAGCCGCGGGCGTGTCCATGGCGGAGCGAGGCTCGGTGTAGCGTTTCCATTGGCCGCCCGGAGGCATCGGCCGCGCGGTGGTGCTGGCGCGGCTACACTCGATGCGCTGGGCGGAAAACGCTGCCTCGCGGGCGTTCTTGTCCGCGGTAATTTTTCTGCCTGGCGTCTTGTGCTTAGCTGCCGGTGACGGCGTGCTCGCCGTGGCTCAGCGGGACGGTCGACCTTGGTATAGCTGTCGAAATGGCCCGGGTCCCTAGAATGGGGTTGTGATCGGCGCGTTCCGCCAGGGGGCGGAGCGAACCTTTAAAGGCGAGCCGGGCAGGTCTGCCGCGGCACTCGGCCATACGCCGTCAGGTTATGCAAAGGGTATCGAGAACCGACCACGGACGAATTCAGAACAATTTCAGAGGTGTTGCATGGCAACGGATTTGAGCAAGTACATTCGCAATGCTGCGTTCATCGACAAGGTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //