Array 1 4095-3166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPZP01000008.1 Yersinia frederiksenii strain IP23698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4094 28 100.0 32 ............................ TATGCTGATCTCCGATAAGAATAAGCGATACT 4034 28 100.0 32 ............................ TATGCTGATCTCCGATAAGAATAAGCGATACT 3974 28 100.0 32 ............................ ATTCAAATTGACAGGCACGCATATAATTGCAA 3914 28 96.4 32 A........................... ATTCAAATTGACAGGCACGCATATAATTGCAA 3854 28 96.4 32 A........................... AAACCAGAACCAGTCTGGATTAGGGCCAGATA 3794 28 100.0 32 ............................ TTCAGCTAATAAAGAAAACATTAGGTGTTGTC 3734 28 100.0 32 ............................ CATATTTAAGGCGGTGCTCATTGTGTTTAGTT 3674 28 100.0 32 ............................ ACGGGCCGCGTGGAAAAAGTCACGCACGTCAA 3614 28 100.0 33 ............................ TCATCTAGTGGTCTTAGGCCGCTTCTACTTCTT 3553 28 100.0 32 ............................ TCTCCCCGAAAGATGAATCACCATTCATCAAC 3493 28 100.0 32 ............................ TAACTCATACATTGAATTGCCACTGTATAACT 3433 28 100.0 32 ............................ CGATAACCTGACCGTGGGCGGCTCGCTGGGTT 3373 28 100.0 32 ............................ GCTAGCGTAAAATCTTCCAGCCCCATTGATGC 3313 28 100.0 32 ............................ GCATGGCAGGAACTGGCAAAAGCACAAAGAAA 3253 28 100.0 32 ............................ TTACTTAATCCATTAAAAGGGGGCATCCACAT 3193 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.5 32 GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : CAGCTTAGAAAAGCGGATAACTGCTCACGGCTGCGAATACCATGTTCGCTGCCGTGCAGGCAGCTTAGAAAAACCGAACCATGGCGACAGAAAGGGAGAAAGCGTTCGCTGCCGTGCAGGCAGCTTAGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCGCTGCCGTGCAGGCAGCTTAGAAATATGCTGATCTCCGATAAGAATAAGCGATACT # Right flank : AGGCAATTAAAGAGGTTGTGTAAGTATCCCTGCAAATACCGAGTTTTTACACAGCCTGTACCAAGAACGGACATTTCTCACCTCTATCTAAGTCCATAGACTAGTGGGCACGCTCCATATGCCCCTGTCATAATGACTCAGCCCGCAGCGACTAGAGCTTCCTTAGCTAAGCGTTGCATGTTTAATGATCGGGTGCTCAGACCAGCCTTGGAGAACCGATAGCGCATATAGGAGGAAATGTCATCCTCATGCGAGGAAACGATTAACTGGCGATTGCTGAACTCACAGCGAAGAAGATCAGTTAAAGAGGCGATATTCACCTCATCTAGCGACTGGGATGGGTCATCGATCAGGATCAGCGGCACGTGTGAGTAAACTTTATTCAGCGAGAGGAAAAATCCTAGACTGAGCGCCGACACCTGCCCAGAGCTCATCGACAGAATCGCATCATATTCAGACTTCTCGGCTGTAAGAAACCTGAGCTCTTTACCATCTTTGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4612-4464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPZP01000008.1 Yersinia frederiksenii strain IP23698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4611 28 100.0 32 ............................ AGCGGATAACTGCTCACGGCTGCGAATACCAT 4551 28 100.0 32 ............................ AACCGAACCATGGCGACAGAAAGGGAGAAAGC 4491 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : TCAACCCAGATAAGTTCGCTGCCGTGCAGGCAGCTTAGAAAACACGTAACGGGGCCAGTATTAACACGCGGTCGTTCGCTGCCGTGCAGGCAGCTTAGAAATGCTATCAGGCCAAAACTTGAAAGCAATTGGTGTTCGCTGCCGTGCAGGCAGCTTAGAAACATCCCCATCTGATAATTTAGGTTCCATGCTAGTTCGCTGCCGTGCAGGCAGCTTAGAAAACCGGTCAATTGGCAGCGTGGGTGGCGGGAGCGTTCGCTGCCGTGCAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCGCTGCCGTGCAGGCAGCTTAGAAATATGCTGATCTCCGATAAGAATAAGCGATACTGTTCGCTGCCGTGCAGGCAGCTTAGAAATATGCTGATCTCCGATAAGAATAAGCGATACTGTTCGCTGCCGTGCAGGCAGCTTAGAAATATGCTGATCTCCGATAAGAATAAGCGATACTGTTCGCTGCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 7300-6972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPZP01000008.1 Yersinia frederiksenii strain IP23698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7299 28 100.0 32 ............................ TGGATGTGGCAGCTAGTCATAAAAGCGCCCTG 7239 28 100.0 32 ............................ TGCTGATGTGATATTACCGGTGACGTTTAATG 7179 28 100.0 32 ............................ ATAGAGTAGGCCAGATAAAATTGCCGCTTCCA 7119 28 100.0 32 ............................ TGCCACCAGTAGCGCCACTCTTCTGCATAAAG 7059 28 100.0 32 ............................ TTCATGTTATCCAAGGTAAAACAGGAGCAAGA 6999 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : CGCAAGACATCGATAATTTGATGCAGCAAAACTGGTTACAAGGTATGCGTGACTACGTTCGATGCAGTGCGGTATTGCCGGTGCCTGAGGCAGTACAATACCGAACGGTGAGGCGAGTACAGGTAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCGTTTGAACAAATACCCGACACCCAACAGAAATCTCTCAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGCGAATTGCAGGAACAAGCTCAGTTGGGAAGTTTCTCTGCCTATGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTTCGGCTATTGCTAACTGATTGTTTTGTAATGGTGTAATGAGAGGGTGAGAAAAAAGGGTTTCTCAGTCAATATCCTGATTTATGTTTAATAAACAGGGTGATGGCATATTTTCATTACC # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //