Array 1 698091-693588 **** Predicted by CRISPRDetect 2.4 *** >NC_015276.1 Marinomonas mediterranea MMB-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================================== ================== 698090 35 88.6 24 ...................T.G..A..A....... ATTATCCCAATTAATGTCTTCTGC A [698061] Deletion [698032] 698030 35 88.6 24 ...................T.G..A..A....... ATTATCCCAATTAATGTCTTCTGC A [698001] Deletion [697972] 697970 34 74.3 26 ...................T.G..A..-..CCTTG TCCCCTTTTGGGAGGCATCCTTGCCT Deletion [697995] 697910 35 97.1 34 ...........A....................... TCAAAATAGTTGCTTAAAGAAGGCTTCACAACCT 697841 35 100.0 35 ................................... CTTAAGTAATAACTAGTTTCTTCTTCTAGTTGGTT 697771 35 100.0 38 ................................... AAGAGAATCTATTTCCTTCCATGATCACTACAGGCTCA 697698 35 100.0 36 ................................... GAAAGAGTACTTTTTATTAAAAAAATAAACAGAGAA 697627 35 100.0 38 ................................... TTTGCTTGTATTAGTTACCTTAATTAAAATTCCGCCAT 697554 35 100.0 35 ................................... GAAAGAGTACTTTTTATTAAAAAATAAACAGAGAA 697484 35 100.0 38 ................................... TTTGCTTGTATTAGTTACCTTAATTAAAATTCCGCCAT 697411 35 100.0 44 ................................... AGCTTTGCAGCGGTGTCGATGTACAGCCAAATGTCTGTTTTTTT 697332 35 100.0 32 ................................... AAAGCGTTTGCTCCAGATAATAACTACTTCAC 697265 35 100.0 36 ................................... TCAGACTTTGTATACTTAGCTTGTTTTTTTCCCTTC 697194 35 100.0 34 ................................... TTAGCAGAAGTAATAGAGTTTATGAACTCTTCTT 697125 35 100.0 37 ................................... TGAGAGTACCAGCTCCAGAGATTTGTGAGACCATTAT 697053 35 100.0 34 ................................... CTGGAAGTTCATCCAACGAAACAACACCTTCGTT 696984 35 100.0 34 ................................... AGGTAATTCTCCGCCCATGTGCTTTAAAATATAT 696915 35 100.0 35 ................................... AACACATTTTCAACTTCAACTTCAAGTTCTAGCAC 696845 35 100.0 36 ................................... AAAAATAGGTTCAGAGCTTGTTTTTTAATCATTTTA 696774 35 100.0 34 ................................... AGCCTCTTCCACCGTTTCAGGCGCCGAATCAGTT 696705 35 100.0 36 ................................... AAAAAACTGTAGGTCATTCCATTGTTTTTCTACAGA 696634 35 100.0 34 ................................... TGTAAAAATTGTCGTAAGCGCTAGTGCGATAAGT 696565 35 100.0 39 ................................... GAAGACATTAACCAGCTCTCTGGTGTCTTTGCTTACAGC 696491 35 100.0 37 ................................... CTCCTTGCTTGTACACATCGGGAGCCCAGATTCCCGA 696419 35 97.1 35 .................................G. ATTCTGCTGAGACGTCGGTAACACTGACTTGTTCT 696349 35 100.0 35 ................................... TTTTCATGGAAAGATTTCCAATGAAGTTCAATAAA 696279 35 100.0 36 ................................... ATCTGGTAATGTAGCGTTGGTTGGTGCGAAATCACC 696208 35 100.0 36 ................................... TTTGTTAATTGATTTATTTTGCTTTTGCTGTTTATT 696137 35 100.0 39 ................................... TTAATAGCTTGAGTTTTTCTAGTGGGTCTTCAGCCCCAT 696063 35 100.0 39 ................................... TTAATAGCTTGAGTTTTTCTAGTGGGTCTTCAGCCCCAT 695989 35 100.0 34 ................................... GTTTCGCTAAGGCGTGCGTCGGCCATAGGAATTA 695920 35 100.0 42 ................................... AGAGTTATGTCGATGGGGAACTTTATGAAGCCGGTTTCGAGA 695843 35 100.0 35 ................................... ATTTCTTTCCTGAAAGATTGGAAGACTGTGTACCC 695773 35 100.0 38 ................................... TTACCCCTGTAATTAAGGTAGCAATCGAATTCATTATC 695700 35 100.0 35 ................................... GCTTCAAGTATCTGCTCGTTGGCTTTTTCTGTGTT 695630 35 100.0 36 ................................... TTGCTAAGCTCTGATACGCAACGCGCAAGTATTACG 695559 35 97.1 34 ..................A................ CCTCTGCTAGAGCGAATTCAAAACTCATTTCTTT 695490 35 100.0 36 ................................... AAAATACCGAGATATTCGGCCACATTTCCACTTAAA 695419 35 100.0 35 ................................... TTTTTCGCAGATGTCATTAATTAATAATGTTTTTG 695349 35 100.0 36 ................................... TACCATGAGCAGACGGATGTGATCTGGAATAGAGAA 695278 35 100.0 38 ................................... ATTTCTCTGTGCTCATGAGGCTTTAATTTTTGCAGCTG 695205 35 100.0 38 ................................... ATTTCTCTGTGCTCATGAGGCTTTAATTTTTGCAGCTG 695132 35 100.0 34 ................................... ACATAGAGCTAATTGTAGCGCGTTTGGTGTTGGG 695063 35 100.0 37 ................................... CGCCGTGTTGTCGTAGATCACCTTCCTTATTGTTGAA 694991 35 100.0 35 ................................... TTTTGAGTGCAAGACCGAAGTCTAGGCCAACTGCG 694921 35 100.0 34 ................................... CTTCTGCTAGTAGCAGAAGTAATAGTTTTCATAA 694852 35 100.0 33 ................................... TCTCTAGCTTCTTGATATCTTCTAGTGTGTTAG 694784 35 77.1 26 ...................T.G..A....GCTAT. TTCTAGAAATTTATCGAACTTGTCAT Deletion [694724] 694723 35 100.0 34 ................................... TTGTGTTGCCCGTTTGAATCTCGAAATCTTCGTA 694654 35 100.0 37 ................................... ATTGTTCCATTTAGTGGAGTATCCCATTCATTGTAAA 694582 35 100.0 35 ................................... CTATTAACCGCTTGAGTTTTTTTTCTGGGTCTTCA 694512 35 100.0 34 ................................... ATTCTTAGTCTCAGCCGTCTTAGCCTTAGCTTCT 694443 35 100.0 35 ................................... GAATTTATTAGATGTTGTGACATTAAACGGCCTAT 694373 35 100.0 38 ................................... TTAGGCGCTTTTGCTGAGAGCTGTTAAGCATGGTTTTT 694300 35 100.0 36 ................................... AAGTAGTCTTCATAGACATCCTCCTATTTATTGTCA 694229 35 97.1 13 ...............A................... AAATATTTCTTCA Deletion [694182] 694181 35 91.4 36 C.AA............................... AAAATTCGCCCTCTCCGCAGGAAATGCTTATAGCAT 694110 35 100.0 35 ................................... GCCGCTTACAGTCTTTTACTTCGTTGATTTTTTCT 694040 35 100.0 34 ................................... CTCTCCAGTTTGTGACGTGTCACACTATTTTATT 693971 35 80.0 107 ...............A..........GTG.A.C.A TGAGCCATGACTGTTGGATTGGGACGGTTCGGTTTAACTAGGGAGAGATCCGTTAGACAAGACCCCCTCCCTGCCTCCCCCTTAAGTAAGGGGGAGGAGCAAGTTTT 693829 34 77.1 99 .C....A....A.......T.G..A.-.......T GAACCATGACTGTTGGATTATGAAGATTCGGTTTAACTGGGGGAAGATCGTTAGACAAGACCCCCTCCCAGCCTTAAGTAAGGGGGAGGAGCGAGCTTT C,G [693796,693800] 693694 35 91.4 36 .C....A.T.......................... ACTTTGGGCGATAGCCAATTAGTGCCATTCCTTTAG 693623 34 82.9 0 .....C.............T.G..A.-.......T | C,G [693590,693594] ========== ====== ====== ====== =================================== =========================================================================================================== ================== 63 35 97.5 37 GTTTCAGACCCGCTGGCCGCTTAGGCCGTTGAGAC # Left flank : ACCTTGCCTGTTTCGACATCGAAGACGATAAAAAACGCCGTAAGCTCTCAAATTTACTCTTAGAATATGGCGATCGAGTCCAGTACTCGGTATTCGAAATCAGCCTAAAAGATGAAAACGAGCTGCATAAGCTGCGTAAAAAATGCAGCAAATACACAGAAGAAGCAGATAGCCTGCGCTTCTATTGGTTAAACAAAGAATCCAGAAAACACAGCCAAGACGTTTGGGGAAACCCCATTGCGGTGTTCCCCGCCGCCGTCCTGTTATGATATAAACCCTTTATCAGTGAATAAACGGTTTTTGCTCTTTAAAAACAAAAACTTAAAACAGTCCTCTATCGATTGAAGGGGTATGAGGGCGCGTTTTTCATAAAAATCAAAAACTTAGCTTGAAATAATAGCGAAAATTCGCTAATTTTAAGTCTACCTCTTGTGGATAACTTGAGGGCGGGGGAAACGCTAGGTTAACCTGCTGAAATGATTGGAAAAAATAAGGGTACT # Right flank : GAACCATGACTGTTAGATTGTGAAGATTCGGTTTAACAGGGGTAAGACCCGTTAAACAAGACCAACAAAAACGCTCGACCTAAGCCGAGCGTTGTAGCCCTTTAAGTTTGTGTAAAGGGTTCAGTCAATTTTATTAGCGACCACTAATTAGCAGACAGCTAGTCTGCTTTTGTAACATGCACGTCCATTTGAGGATATGGAATGCCTACACCATTTTCATCAAATGTGTACTTAATTTTTTCTAGCAAATCCGCTCTTACACCCCAGTAATCTTCAGATTTCACCCAAGGACGAACATTGAAGTTTACAGAGCTGTCCGCAAGCTCACCAACGGCAATAACATAAGCCGGATCTTTTAAAATTCGATCCTCTGAGTTTAATATGCCTTCTAGCAGCTCTTTCGCTAAACGGATGTCTGATTCATAGCTAATACCAATGACGAGATCCAAACGGCGTGTCGCTTCTCGTGAGAAGTTGACAATGCTGCCCCCCATAATACT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACCCGCTGGCCGCTTAGGCCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [38-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 710945-710345 **** Predicted by CRISPRDetect 2.4 *** >NC_015276.1 Marinomonas mediterranea MMB-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 710944 35 100.0 33 ................................... TTTAAAGATCTCCGCCACGCAAACCAATTCCCC 710876 35 100.0 37 ................................... TGGGGGTTGGGGTTTCTATTTTTCGTTAGTATTCAGA 710804 35 100.0 35 ................................... AAGATATTATCTTCGTTATGGCGGAAATTATCAAT 710734 35 100.0 36 ................................... TTACTGAACGAAGACTGGGAGGCATGGGAGCAGAAT 710663 35 100.0 34 ................................... TTTGGCGGTATTGCCATCATCTCCTCATCAAGCT 710594 35 100.0 36 ................................... AAGTAATACTTGCTCAAGTCTTCAGCTATACGATAG 710523 35 100.0 38 ................................... TTAGATAGAAGTTGAGAACACGTCAGATGGATTAAGTC 710450 35 100.0 35 ................................... TTTGACGCATAAACCTGCGCGCACAAGTGCGTTCT 710380 34 82.9 0 ................T..T.G..A.-.......T | C,G [710347,710351] ========== ====== ====== ====== =================================== ====================================== ================== 9 35 98.1 36 GTTTCAGACCCGCTGGCCGCTTAGGCCGTTGAGAC # Left flank : AAAGTTGGGTCGTAAATAAAATTACATACCGTCACGAGCAGCAAAATATATGAAGGCCCAGAACACGCAATCTGCAACTACAGTGCTAGTAAGGGACGAATAAGCCTAAAAGCTGAAGATACACTGCATAAGATGCGCAAAAAATGCAGCAAATACACAGAATAGGCAGATAGCTTGCGCTTCTATTGGTTAAACAAAGAAGTCAGAAAACACAGCCAAGCCGTTTGGGAAAACCCCATTGCGGTGTTCCCCGCCGCCGTCCTGTTATGATATAAACCCTTTATCAGTGAATAAACGATTTTTGCTCTTTAAAAACATAACCTTAAAACAGTCCTCAATTGATTGAAGGGGTTTAGGGCGCGTTTTACATAAAAATCAAAAACTTAGCTTGAAATAATGGCGAAAATTCACTAATTTTAAGCATACCTCTTGTGGATAACTTGAGGGCGGGGGAAACGCTAGGTTAACCTGCTGAAATGATTGGAAAAAATAAGGGTACT # Right flank : GAACCATGACTGTTGGATTGGAACGGTTCGGTTTAACTGGGGGCGATCCGTTAGACAAGACCCCCTCCCAGCCTTAAGTAAGTGAGAGGAGCGAGCTTTGTTCCCTCCCCTTACTTAAGGGGAGGGTTAGGGAGGGGTCTATTAACTGGGAACATCGTTTGCACGTTAAGCGTTCATAAGGACAAATAAACCAATGGATATTAAAATCAAATTAAAGAAAGTTTATAGAATTGCACCAGCGTCATAGTTACCACCACACAAGTTTCAGACCCGCTGGCCGCTAAAGTAACTCTGACGAAGGCCTGAGTCTAAATGGGTTTGAATTTTTGAAACCATTTTCACAAAAAACTAGAATGACCGACGTCTACTTTAATTTTACTTTTTTATAATTTTCTTTACATAATTTGTCCTTAATGTTTAACATGGCATGAGACTGAAAACAGATATGCGAAGGAATGTGGTAGTTTTTAAGTAGCTTACCTTTAATCTCTCTCCCCTCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACCCGCTGGCCGCTTAGGCCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 3646959-3643586 **** Predicted by CRISPRDetect 2.4 *** >NC_015276.1 Marinomonas mediterranea MMB-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================================================================================================================================== ================== 3646958 28 100.0 32 ............................ GCATCCATGAATCCATTCACAGCAAAGCATAA 3646898 28 100.0 32 ............................ TTTAAGTTGTTTCTTAGCATACGCTTAGTACG 3646838 28 100.0 32 ............................ TAATGTACGGGATGTGCTTCGATTCTGCTAAT 3646778 28 100.0 32 ............................ TAAATAATGTGCTTCTACTTTTTCCCTAGTGT 3646718 28 100.0 32 ............................ GCTATGCCGCAACTATCCGAAGGGGTGTCTTA 3646658 28 100.0 32 ............................ TTCTTGTCAATCTCTTTTATAGATAAATTGTC 3646598 28 100.0 32 ............................ TATAAGATGCTCTAGCGGATATGATAGAGGAG 3646538 28 100.0 32 ............................ TTCACAAGATGTTTGTAATGAGTTAAGAGAGG 3646478 28 100.0 32 ............................ AATGTCGTAAACTGTGCCTCTGGGAGGTAACC 3646418 28 100.0 32 ............................ TCCACTCTGTCAACTCTAGGTATCATATGAAT 3646358 28 100.0 32 ............................ AGAAGATGCAAGGGTTTACATTAACGCAGTGA 3646298 28 100.0 32 ............................ CCCGACATTGAAACAGCAATACAGGCCAAAAT 3646238 28 100.0 32 ............................ TCATCATCATCTGGTTCATAAGTGTATGTTTG 3646178 28 100.0 32 ............................ CAACAAAAAGCGAATGAAGCGTTTTTGCTGGG 3646118 28 100.0 32 ............................ TGACCCGATTCTTAAACATATCGCACGCTCTT 3646058 28 100.0 32 ............................ TTTGGCATAAAGGTTCTTTACACCCCCACCCA 3645998 28 100.0 32 ............................ TTTGGCATAAAGGTTCTTTACACCCCCACCCA 3645938 28 100.0 32 ............................ TTCATTCCAAATCCCAAATAACGCAAGTCCCT 3645878 28 100.0 32 ............................ TTAGCGAGACTATGAAAAATAGCAAGCAAGAG 3645818 28 100.0 32 ............................ TTAGAGCCATTGGGGTTCCTGTTTCCACTGTT 3645758 28 100.0 32 ............................ TCCTTATACAGCGTGTACACGTTGTCTTCTGA 3645698 28 96.4 32 ...................A........ GAAGAGGTAAACGCTAAAAAAGGTAATAAATT 3645638 28 100.0 32 ............................ GCCAAGCCCCGCCACTTGAGCAAGCAAATCCA 3645578 28 100.0 32 ............................ TTGTCGGGATCGTTGCGCCCTCCACCTCGTAT 3645518 28 100.0 32 ............................ TTGTTAATCGTTTGATTCATTTGTTCCCCTTG 3645458 28 100.0 32 ............................ ACCCACTCCCTCGATTCTCTGCTCTAGCTCTT 3645398 28 100.0 32 ............................ CGACGCGTTAGTCGTAGCGTTAAGACGCGCCA 3645338 28 100.0 32 ............................ GCAACACTACCAAAGCTTGCCCTTATATCTTC 3645278 28 100.0 32 ............................ ATAACGATATAAGAGGATTTTGTTATGGTAGA 3645218 28 100.0 32 ............................ TAACAAGCATGTATCCCGGGGGTGGGGATGTA 3645158 28 100.0 32 ............................ ATAACGTAGAGCCGTTAAAGTTCAAAAACTCT 3645098 28 100.0 32 ............................ ACAATGTGGGCAAGTTACAGTCCAAACTTTTA 3645038 28 100.0 32 ............................ TCTGAGATATTCCAGTATGCTCGTGTGCACGA 3644978 28 100.0 32 ............................ TAGTTGAAGGCGTTAACGCTCTTAAAGGCGAG 3644918 28 100.0 32 ............................ TTAATGATAAGCGGTTTAAAGAGTAACAACAC 3644858 28 100.0 32 ............................ TATGTGTCTACATAAGGAAAGTGAGCTAGCAT 3644798 28 100.0 32 ............................ TAGAAGATAAGGTAACTCAACTAGGTGAAGAC 3644738 28 100.0 32 ............................ TTTATAAGAGGGGCTAGTAAAGCTCCTTTAAA 3644678 28 100.0 32 ............................ CGTAACGCTCGCTATGAGGTAAATGGGTTGAA 3644618 28 100.0 32 ............................ TCCGCACAATTACTAGAACAGATTCAGCCTAT 3644558 28 100.0 33 ............................ TTGCCGAAGGGAGTGAACATAAACGGAAACTAT 3644497 28 100.0 33 ............................ CTTAGAAAAAACGCAGACAAGGCAATATGGGCG 3644436 28 100.0 32 ............................ TTGTGAACGTTGTTTGTGTTTTGACAGGGGAA 3644376 28 100.0 32 ............................ ATTTTGAAGGTGAAGTAGGGGATGGTGAACCA 3644316 28 100.0 32 ............................ CTCAATCGCGCCGTAATCCGTGTTTGTAACGG 3644256 28 100.0 32 ............................ ACCAGATGGCCGAAATTATCTATGCCCTATCT 3644196 28 96.4 32 ...........C................ GCGCCATGCTCCCGCCGCCTCGCAAGCGAGAG 3644136 28 100.0 32 ............................ TAGATTGTGGTGTTCAGATTCCGCTTGAGCGG 3644076 28 96.4 32 .....T...................... AGCAAACAGCATTCAACACTCTGAAAAAACTT 3644016 28 96.4 31 ..............G............. GAAGCTGTTCGATGTATGCAGTAATCTGCCC 3643957 28 96.4 33 ...........C................ TCGACTTCTGGCGTTTTCGTACTCTGCTTTTAT 3643896 28 96.4 31 ...T........................ GCATCAGCGGTTTTTTATGCCTAAGCCTCGC 3643837 28 96.4 196 ...........C................ GATACAAGGTCAGGGTGGGGGTCTAATCTGGGGTGTTAACGGATCTTGCGGTGATTAGGCGTAAGCCTTTTGAGAATTATTTAGCATTAGATTTTTGGCTTGGTAAACTGGATGTGTGTAAATGATGATGTCGGTTTATAGAAATATCTAGACCCTTCCCTAACCCTCCCCTTAGTAAGGGGAGGGAACCAGAGCA 3643613 28 67.9 0 .........T.A.T..ATG.T..G.T.. | ========== ====== ====== ====== ============================ ==================================================================================================================================================================================================== ================== 54 28 98.9 35 GTTCGCTGCCGTACACGCAGCTTAGAAA # Left flank : TTAATATTCAGAAATGGATGAACCGCCTAGAAGACTACTTGCACATTAAATCCATTTCAGAAGTAGACCCGAGTAAAGTGCAAGGCTACGAATCTTTTAGCCGACTGCGTAAACCCGGAAACGTCGACTACATGATTCGTCGTCGTATGAAAGGGTTAGACAAAAGCCATGAAGAAGCCAGCGACTACTTTAAAGACTATAAAGTGAGTGATAACTTTAAACGACTGCCGTTTATACAAATGAAAAGCTTACAGAAAGACCGAGAGTTTCGTTTGGTGGTTAAACGCAAAACCTTAGAACAAGCTGTCGAAACAGACTTTGTGTTTAATACTTATGGATTAAACAAAGACGTCGCATTACCCAAGTTTTAACCAATAAATTTCGCTCTTTAAAAATTGATATAGAAAACAACGGGTTACGATATAGGGCAAAACATAGGTAAAAATAGGTATTTTTACCTAACTCTATATTGTGACTCGTTTTTTTGCTGATAAACTATA # Right flank : GGGGAGGGAGCAAGAGGATGGTTACACTAGATCAAATAGGATGGCTTTGACGCGTTGCTCTTGGTCATTCTGTAAGGTTAGTGTGTCTTCACTTTGGATCATTGCGCCGTCTCCTGGTCGCAGTGTGGTGCCGTTATTGAGTGTGAGTTCACCTTCTATTTGGTGTACGTAGTAACGGCGTTCGCTGTTTGCGTTGACGGTTTCTGTTTGTCCTTTTTCCAGTATCACTTGCATCAATTGCATGTCTTGTTTGATAGCAAGGGTGCCGTGTTCACCCGTTGGGGTGATGATGGGGGTAATCCCTGCGTCTTCTCCAAACGCTTTTTGTTGGTAGCCGGGTTTGCCGCCTTGTTTGTTTGGTTGTATCCATATCTGTAGAAATTTCAGCGTTTCGTCGTCTTTCGCGTTGAATTCGCTGTGGTAAATACCTGCGCCTGCGGACATGAGTTGGTATTCGCCTTTTGGCAGTTCTTTTATGTTACCTACGCTGTCTTTGTGGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTACACGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3898669-3896217 **** Predicted by CRISPRDetect 2.4 *** >NC_015276.1 Marinomonas mediterranea MMB-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================= ================== 3898668 28 100.0 32 ............................ AGACTTGGAAATCACCCCACCATTGCGGGATC 3898608 28 100.0 32 ............................ TTTACGAATTGATAAAAAACATGCCCGACGCA 3898548 28 100.0 32 ............................ TAGAACCGCCCCGCCAACAGCCACATAAAATG 3898488 28 100.0 32 ............................ TTCAAGCGGCAAATGAATGGCCTTAAAAACAA 3898428 28 100.0 32 ............................ TAAAACACGTCACCGAGGACATGAAAACTCGT 3898368 28 100.0 32 ............................ GAACAATTCGTCTCGGATATCGTCTCGGTTTA 3898308 28 100.0 32 ............................ AGTATATAACTCTAATTGAAAAGCGAAATGCT 3898248 28 100.0 32 ............................ TTTAATCTGTTAACTAGACTGTACATTGGAGG 3898188 28 100.0 32 ............................ GTTTATCAAAAAATAACATTACAGGTCTTTTC 3898128 28 100.0 32 ............................ TTGCCGAGCATCGCGCCGAGACGAATATTCTC 3898068 28 100.0 32 ............................ TGACTTACCGAATCCGCAACCGACTTCCCCTT 3898008 28 100.0 32 ............................ TAATCGACGCATTAGCGAGCTTTGCACGTAAT 3897948 28 100.0 32 ............................ GCATTAGCTCGCTCAGCACGTAATTAGCGTCT 3897888 28 100.0 32 ............................ TCGACCCAGACTACATGACGGCACTGGGCATC 3897828 28 100.0 32 ............................ ATTTCACACCGGAGCGAGCATCATCACGTAAA 3897768 28 100.0 32 ............................ ACCTCGTTAGAAATAAGTCGTTCGCGGCTTTT 3897708 28 100.0 32 ............................ TTTGGTAACTACTCCAAGTCAAAAGGCGTTAG 3897648 28 100.0 32 ............................ TTATAGCCTCTGGAGAGCGCAAAGACCTTGAA 3897588 28 100.0 32 ............................ TCTATTATCGTTCCGTGGGCACCATTAATCGC 3897528 28 100.0 32 ............................ TTGCTAAGCGTGTGATTGATACAACACCCCGT 3897468 28 100.0 32 ............................ TTGTAATACAACACGCGCTGTACCGGGTGCAA 3897408 28 100.0 32 ............................ TCTTTATCGTCGTTTAAGTCATCGTCTTTTAC 3897348 28 100.0 32 ............................ TTTCCCTTTGATTTCCGCGCGATAGCGCGGAT 3897288 28 100.0 32 ............................ TCTCGGTCACCGTGTTAAACACATTCACCTGG 3897228 28 100.0 32 ............................ TGTCATGTCTAGAAGTTCCGAATTTGTATCAT 3897168 28 100.0 32 ............................ TGTTCAAAACACATATACAAATCACGAACAGG 3897108 28 100.0 32 ............................ ATTCACCATGAACTCTCTTAAACATTCTTTGG 3897048 28 100.0 32 ............................ TATGTATTTTGTTAATTCGACATACTGACCAG 3896988 28 100.0 32 ............................ GATTGTGTACACGGTTTTAGTTGTTAAATCGG 3896928 28 100.0 32 ............................ TTTCTACGAGCGCTGAGAAGGTCGTATTCTGC 3896868 28 100.0 32 ............................ ACTTGACCGCTTTACCTTTAAAAAACTTCATA 3896808 28 100.0 32 ............................ TCCCCCAGTGTCCCATCCTCCGTAACACGTCT 3896748 28 100.0 32 ............................ TTGAATATGAAGTCATAGTAATCATCAAAACT 3896688 28 100.0 32 ............................ CTCTATGCCTCCGAGATTTTGAGAATCGGAAC 3896628 28 100.0 32 ............................ ATACACATCTCGTCGTGCTTATCTCGTCCCAA 3896568 28 100.0 32 ............................ CATTATTCGCGCCATTGCGACAATCGAAAGCC 3896508 28 100.0 32 ............................ ATATAGAGCTTTCCGTTACCCGTTTTGATAAC 3896448 28 89.3 177 ..C......................T.T GACGTTTGGCTCCTCCCCCTTACCAAGGGGGAGGCTGGGAGGGGGTCTTATCGAGGGAACCAACTGAATCTTGTTTCGATTCGGCGTAAGCTTTTTGTGTAAATGATGTTGTCGGTTTACACAAACATCTAGACCCCTCCCTAACCCTCCCCTTGGTAAGGGGAGGGAACAAGATAA 3896243 27 85.7 0 ...T..............G.....-.T. | ========== ====== ====== ====== ============================ ================================================================================================================================================================================= ================== 39 28 99.4 36 GTTCGCTGCCGCACACGCAGCTTAGAAA # Left flank : CCGGCACCGTAATGGGCAAAGAACTTGCGCATTGGTTCGCGGGGGACATTGAGAGCCTATCCGCACCTACATCGGTATTGCGAGATACCCCCCTTCGAGAATTAAAACGAGTCTTTTATGAAGTCGGTGCAAAAGCATATCACCTAGGACAAAGTAAGCATTTACTTACTTAGCATCCATAATGTATCCAGCAAATAACGACCTTTAGTGAAATGCATATCTGTGCTTGTGACACGCCTCAACACTGTACTACTATTAATGAGTCACTATTTAGGTTGAGACGTGATTGGTCAGACGCGTACTTTATCTAAATGAACTTTCTATACCGCCTATGGCTTAAACAAGAAAGATCGTATGACCCAAGTTTTAACCAATAAAAAACGCTCTTTAAAAAATGACTTACAAAACAACGATTTGCGATGTGAGGAAAAAACATAGGTAAAAATAGGTATTTTTACCTAACTCTATATTGTGACTCGTTTTTTTGTTGATACACTATT # Right flank : TGACGTTTAGCTCCTCCCTCTTACCAAAGGGAGGGAACCAGAGAAGTTCGGGTTTTCATTTTCCCCATTATCGACAATATACGATACAATTTTGGCTTTATGCATCATAATTGGAAGGATCATGCGGCATTACATCCCGTCTTCGACAGCATTGAAGTGCTTCGAAGCCTCTGTTCGACATCTTAGTTTTACCCGTGCTGCGGAAGAGCTTCATTTGACTCAAAGTGCGGTGAGTCGTCAAATTCGTAATCTCGAAGAGTTTCTATCTCGTGAGCTGTTTATTCGGTTAAACAAACGTCTTGTTTTGACCGGTACGGGAGACGCGTATTACAAAGAAATACTGCCGTTGTTAGATGCAATGGAAGGGGCGAGTTTAAGAATGTTGCGCCGCGAAGATGAAAAAACGACGCTGCGAATTGCATCATTGCCGACTCTTGCTTCGTATTGGTTAATACCGAAATTAAATGAGTTTCAGGAGTTGCATCCTGAGTTTCAGATAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACACGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //