Array 1 104636-105859 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYI01000011.1 Listeria ivanovii strain Liv13-002 Listeria_ivanovii_Liv13_002_Contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104636 36 100.0 30 .................................... TGGGTGTACGCACACAATGCTTTAAGCGCA 104702 36 100.0 30 .................................... AGAGTTGATCCACTATATTCAAAAAGCTGT 104768 36 100.0 30 .................................... TATCAACGTTTGAACTCATTCAGTCGAACA 104834 36 100.0 30 .................................... TTGACATCGCGGGTGTACCCCATGCGTTCG 104900 36 100.0 30 .................................... TTTTCACCATTTAGTCGAATTCTTGACCAT 104966 36 100.0 30 .................................... GAACATTTAAAGGTAATTGCAAACCTCGCC 105032 36 100.0 30 .................................... CGTACCCATCCACATAGATAGAGCGAGCCG 105098 36 100.0 30 .................................... TAAATCAAATCCGGTGCGTATGTATAAGGC 105164 36 100.0 30 .................................... AGAGTTTTCGCAGGCAAGTCCTCGAAGTTA 105230 36 100.0 30 .................................... TTCCGTTTTTGCGCCCGGTGCATTTACCGA 105296 36 100.0 30 .................................... ATGATTTAGTAAAAGCTATGCAGTTGCCAT 105362 36 100.0 30 .................................... GACAAAATTAGCTTGGTATGACAACAAGAA 105428 36 97.2 30 ........A........................... ACACACTGGTTTAGCAATAGCACATCAAAA 105494 36 100.0 30 .................................... TTGATTTGATTTGAGAGGGGGTGAAAACGA 105560 36 100.0 30 .................................... GCTTAGTAATGCGAATGCTAGGGCTGTTCA 105626 36 100.0 30 .................................... TGAAGCATGGATTTTTAATACAACCCAACA 105692 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 105758 36 97.2 30 ..........................G......... GTTGGCACTTCTTGGAATTACGGGTCCGCT 105824 36 86.1 0 ......A.................G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCTAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCTTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAAGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGGTTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : CAAACCATCTAATTTCGGTTTGTTTTTTTATTTACCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATTGGCAACCAACATATTCGTGGAAACTCCTGAAATGAGACCTGGCTGAAATAGCAGATGAACGTTTTCGCAATGTTGTTACTTCTATGTCTAAACAAGCTTATTTAGCTATTGGCTCTCTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTGTTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGAGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATTAATAAGTGGGAGAGAAGTGGCGTAAACTTTAAATCCATTTGAAGCGTTTTATTACACATATTATAAGAAGCTATTCTACCTATTTAATAGACATCTATACTTTTCGGACGCTTATTATAAATTTTTTTAGAATAATAATGTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 142340-140210 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYI01000004.1 Listeria ivanovii strain Liv13-002 Listeria_ivanovii_Liv13_002_Contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 142339 29 100.0 38 ............................. ACCTAACACTTTCATTGCTCTTCCTCCTCACCATAAAG 142272 29 100.0 37 ............................. ATTTTCATCAAACTCTTTAGTTATTTTATCACTAGCG 142206 29 100.0 37 ............................. AAAGACAATACTTCTTTCTTAGTTTTCGATATTACTG 142140 29 100.0 35 ............................. ACGGTACAGTTGAAGAGGCTATGTTGGAAGCTTTG 142076 29 100.0 35 ............................. TTGGTATCACTATCTTTATAACTACTTCTTTTTTG 142012 29 100.0 38 ............................. AATTGAATATCGCAATCAAACTCTTTTATTGTAACACG 141945 29 100.0 38 ............................. ACAGAAAGCAAAAGCGAAGATGAAATCAGGGATTATTG 141878 29 100.0 36 ............................. ATCGAAAAATATAAAGCGAGTATCCAAGCAGAAGAG 141813 29 100.0 37 ............................. AACATTTTAAGAATTCTAGAAAATGACCCGCATTTGG 141747 29 100.0 35 ............................. TATCATATGCTGGGTATGGTAGACTTCTCATCAGG 141683 29 100.0 35 ............................. TAAAATCTCTTACTTCAGTCGCATTTAAATTTTCG 141619 29 100.0 35 ............................. CACAATGTTTTTATTAGAAGACACAAATACAGTGG 141555 29 100.0 37 ............................. GCTAATAATCTTGGTGGATATAAAGTCCTAGATAATG 141489 29 100.0 37 ............................. GAAGTACTTATTAAGCTCTTGAATGAAGAGTTTCCTG 141423 29 100.0 37 ............................. GTATGTATGACTATTAGTGCCGCCATCTGGTCGCATG 141357 29 100.0 35 ............................. CATAGATATCGCCCAGCTGACAAGGTGACAAGCGG 141293 29 100.0 37 ............................. AAACAAACAAAAAGTCGTTATTTTGAAGTAAAAGACG 141227 29 100.0 37 ............................. ATATTCAAGAGCTTTAGGTGTGGTTACTTTCGTGATG 141161 29 100.0 35 ............................. TTGGCTGTTTCTATCTCGTCCCATTATCAACTTGG 141097 29 100.0 37 ............................. ATGGACATCACTCGTCATCCGGAGGAATATGCTTTCG 141031 29 100.0 37 ............................. TGATTTATCGCCAACTTTCACCAAATGCGGTGGGTCG 140965 29 100.0 38 ............................. AAGTATTCAAGCACAAATTTCTCAGTATCTTCTTTTTG 140898 29 100.0 37 ............................. ACGCTACAAATAAGTATTTCCGCTCTCAAAAGGGGCG 140832 29 100.0 38 ............................. TCCAACCACGCACGGGCGAAAAGTTCTTGATTTTCACG 140765 29 100.0 36 ............................. TGTAAAAGGTCAAACTGGGGTCAAAGTGGGACTTTG 140700 29 100.0 37 ............................. CAAAGTAATATACTATGAATATAGACAAACGAAACAG 140634 29 100.0 35 ............................. GTTCTATTTTCCGATAGGTGCTTACTGGAATATTG 140570 29 100.0 38 ............................. TGGGAAAAGGAGAGGAGCTGCAAAAGCGAAACGATCAG 140503 29 100.0 38 ............................. AAAATAATTTGATTGATACGATGGGTATGCATTCAGTG 140436 29 100.0 37 ............................. GAAGTTATCGCGTCGGAAATTATCACTTATGCGCAAG 140370 29 100.0 38 ............................. GTGGGATGTAAAAACAATTTCAACTGATAAGCCAGACG 140303 29 100.0 36 ............................. AACAACTGCCCCCATCACCATTTTTTCTCACCACCG 140238 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 33 29 100.0 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TCTTAAAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGCTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAGGAATAAATTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGTTTAAGAATGAAAAAAATCGTATCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 157818-154700 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYI01000004.1 Listeria ivanovii strain Liv13-002 Listeria_ivanovii_Liv13_002_Contig04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 157817 29 100.0 36 ............................. CTGATTAAGAGTTTTGATATGGGATAGCTACCTATG 157752 29 100.0 35 ............................. ATCTTTATCAAACTTAGCAATTTGTTCAGATTCCG 157688 29 100.0 34 ............................. ACAAAAGGCTACGCAGATTGGGACCGCCCTATTT 157625 29 100.0 35 ............................. CTCTCCATCAACTTTAATACGCAAACGAACAGTAT 157561 29 100.0 37 ............................. CATTTTGAGTTATATGACAAAGCGGGCGGTGCTAAAA 157495 29 100.0 37 ............................. CCTTCAAACTATTAAAGTCTGCCGTTCTGAGAATATC 157429 29 100.0 34 ............................. TTATATTGCCATCGCGCATAAATAGATGTCCACA 157366 29 100.0 35 ............................. AGAGTATAAACAAAATAAAGCTTCAGAACAGAAGC 157302 29 100.0 35 ............................. ACTTCCTCTGCTAATGTACAGCGCATTTCAATATC 157238 29 100.0 36 ............................. CTCTCTACATCAATAATTCTATATTTCTTCACCTAC 157173 29 100.0 36 ............................. ATTTGTAAGCAAAACAGATAAATTAACAATGTATTT 157108 29 100.0 35 ............................. CTAGTACTCGCCTCGTAAAACTCTTGACGTGTAAC 157044 29 100.0 36 ............................. ACACTTGTAATTGAAAGTGACAAAAGGAAAGCAATT 156979 29 100.0 34 ............................. CAAATTCTGGCACAAGTGGGGCCGCATCGTCCGT 156916 29 100.0 35 ............................. ACGAAAATATCATTTTATCGGACGTTTCGTAAAAA 156852 29 100.0 34 ............................. CACATTTGCTTATTTGGTAGTCCCGCATAATTTG 156789 29 100.0 38 ............................. AAGACAAAGGATGGTGGTCGCCCCGGGGCGGTCGGATT 156722 29 100.0 37 ............................. ATCGTTGCTATATATTTTTGTCATTCCGCTTCCTCCT 156656 29 100.0 36 ............................. TTTGATTTTGTCCATTTTTCCATGTATTTTTTTGAT 156591 29 100.0 35 ............................. GAAGGTGGCAAAGAAACAAGAGCCTATGCGATTAC 156527 29 100.0 35 ............................. ATGTTCGTCAATATATTTTAGTACTGTACATTTTA 156463 29 100.0 34 ............................. ATTTTACTTTCTAATTCTTCAATCGGAACACCAA 156400 29 100.0 34 ............................. CCCATTTACGGAACTATCACCGAGGAACAAAAAG 156337 29 100.0 34 ............................. ACTATTTCCGAAGCAGGTATAAAATTCCCTTTTG 156274 29 100.0 36 ............................. ATTCGTCGGGTATAACGCTAAAAAAGGTACGAAAGC 156209 29 100.0 36 ............................. ATCTTTTGTTATATCATTCAACATAATTTCATTATC 156144 29 100.0 34 ............................. TATTCGTCATATTAGCAGCACTATTCACGTATAT 156081 29 100.0 35 ............................. CGAGAACGTCACGGATTTGCAGCGGCGATGGTAAC 156017 29 100.0 36 ............................. CTCGAAGATAGATTTATGTCTGTAATTTGACCTGTT 155952 29 100.0 35 ............................. TCTATATACCCTGCGTTATCAATTGAAATATAAAC 155888 29 100.0 37 ............................. AACAGACACGAAGGGAAAGTGATTGATAGTGCGCCGC 155822 29 100.0 37 ............................. TTAATCGTTGGGGAATGAGTATTTTATAGGTTTATTT 155756 29 100.0 36 ............................. AACCGGCGAATCTTGCGATGCGGCAACAAGTTCAAC 155691 29 100.0 36 ............................. GAAAAATCGGGCGTAGTTAATTTAGTATTTGCTACA 155626 29 100.0 35 ............................. TCTTTTAACGGCCTTGCCATATCGTCACCACCTAT 155562 29 100.0 35 ............................. CATTTAACTTTCGATTAGCTTTCGCAATTAACCAA 155498 29 100.0 36 ............................. AAAGAAGCAGAATTATTTATCGACGACGTCCTAATA 155433 29 100.0 36 ............................. TTTGCTGGTACTCATTTAAAGTCATTCCATCGCTCA 155368 29 100.0 34 ............................. TCTTATGGCAAGTGTCGCTGCTTTAACACGCTGT 155305 29 100.0 34 ............................. GCTTATGCGACAGCAAGGCATAGAAGCGTATGGC 155242 29 100.0 34 ............................. TTTGAAAGCAACAGTGATAAAGTACGTTGTTAGA 155179 29 100.0 34 ............................. AATTATTACAGTTGTTGCTTCTGGAAGTAGCGCA 155116 29 100.0 38 ............................. CTTCTCTGTTTCTCGGCTCCATGTATCTTCTGCTACTC 155049 29 100.0 36 ............................. GTACCGAACCCACCTCTTGCATAGTCGGAATAGTCC 154984 29 100.0 35 ............................. TAACCAATTTGAGCTAAAAACTCAGATGGCGAAAA 154920 29 100.0 35 ............................. CAGAAAAACTTCGGACGGCTGGGAGCTACTATTGT 154856 29 100.0 34 ............................. CTTATTGTCCTTTTTGTAAAGTCGATTGATTTGC 154793 29 100.0 36 ............................. AGGCATTTCCAGCGCCCAAATAAGCACACTTGCGCC 154728 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 49 29 100.0 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGTGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : ACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATATGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGGAAATTCAATACATACCAAGAGACAGATGCGTTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGGAATTGCAACAAAAAAACAAGGAACTAGTACAAAATTAGTTTCTTGTTAGAGTGGGTGTTGGTTATTTTGAAGGATAGAAGCTTCTAGAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATATCGGAAACATTGGTTGATTTAAATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //