Array 1 96695-99033 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXEM01000008.1 Prevotella intermedia strain ATCC 15032 scaffold8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 96695 47 100.0 30 ............................................... AGTAGGAACTTCTCTTTGAAATGTGTCTCT 96772 47 100.0 30 ............................................... AATTTTCTTATTTGGTTCTAGGGATCTTAT 96849 47 100.0 29 ............................................... TATCAGATCTAAAAAGTTTATTGTTTCCT 96925 47 100.0 29 ............................................... TAAATTTAAGTCTGATACTGAATTAGGTT 97001 47 100.0 29 ............................................... AATTCAGTAACTTCTAGGTTTTGTTTGTC 97077 47 100.0 29 ............................................... TCAGCGTCAGAACTAACCACCCTCATTGC 97153 47 100.0 30 ............................................... TAGATGGCTTTGTAAGTTATCGAAAGAGCA 97230 47 100.0 30 ............................................... TACTCTGTCTTGTTCGTTACTTTGCTCAAG 97307 47 100.0 29 ............................................... GCATAAGCCCCTAATTTTCTTCTCCTACC 97383 47 100.0 29 ............................................... AACTGTTCTGGGGCACAGTCTATCACATA 97459 47 100.0 30 ............................................... TTGTACAGTTGCTTACCATTAATGTATGGG 97536 47 100.0 30 ............................................... ATCACACACTTACGAAAATGGCATTGGGAA 97613 47 100.0 29 ............................................... GTTCTCTTTCATTACTCGTCGTTTTTATT 97689 47 100.0 30 ............................................... TGAATTGAATTAGTTGTTGTCATAACTTTT 97766 47 100.0 29 ............................................... GTAGTATCGTGAGTTTCGAGTGGCTGTCG 97842 47 100.0 30 ............................................... CAATGCACTCAACGAGGCTCTTGCACAGAA 97919 47 100.0 30 ............................................... CGTGCCGTCGCTGTCAGCAAACTCAAGGCT 97996 47 100.0 30 ............................................... GGAGCGTTTACGCTGCATAGAGTGCGGATA 98073 47 100.0 30 ............................................... TGTTAATCGTGGCAGTGTTGAAAAGCCTTT 98150 47 100.0 29 ............................................... AAGAGGGCGCAGCTGTTGAATTGTCTAAT 98226 47 100.0 30 ............................................... TATAGGGAAAGGCGAGCACGGACGGCGTTT 98303 47 100.0 30 ............................................... TAGGGATATTTTTACATCAATTGGTCTTGA 98380 47 100.0 30 ............................................... CAAATCCTGCAAGTTGATATTTGTTTCTAC 98457 47 78.7 16 .............................CAC...A.A..GT.GG.T TGTCAAATGTACTCCT AAG,CT [98481,98494] Deletion [98520] 98525 47 100.0 29 ............................................... GTATAGGTGTTAAAAGCAAAAAATATAGG 98601 47 100.0 30 ............................................... ATGACTAATGAAAGGCCATTGAGAAATAGT 98678 47 100.0 30 ............................................... CAAATCCTGCAAGTTGATATTTGTTTCTAC 98755 46 97.9 30 .......................-....................... CAAATCCTGCAAGTTGATATTTGTTTCTAC 98831 47 100.0 29 ............................................... TCGCCCCTCACCGATGAAGGCAAGGGGGA 98907 47 100.0 30 ............................................... TTTATGCAATGTTCTTGAAGTACTCTTATA 98984 46 89.4 0 ..................................C.-.G....T..A | GT,G,T [99024,99028,99032] ========== ====== ====== ====== =============================================== ============================== ================== 31 47 98.9 29 GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : AGCAAAGAAGAATGGTTTATCCTGAATTATAAAGCCTATTAGTGGAAACTTATAGATTTAGTCAATACAGAAGTATGTGGTTAATGGTATTTTTTGATTTACCCACAGATACAAAGAAAGAACGAAAAGCAGCTTCACTCTTTCGTCAAAACTTGCTAAAAGATGGATTTACAATGTTTCAGCTCTCCATTTATATACGCCACTGTGGTAGTAAAGAAAATATGGAAGTACACATCAAAAGAGTTTCCACCTTTATTCCTGCATACGGAAAAGTTGGAATAATGGGCATTACAGACAAACAATTTGAAGAAATAAAGCTATTCTATGGCAAGAAACCACAAAAGCCAAATGCACCTGGAGCACAATTAGAACTCTTTTAACCCTTCTTTTAGAAACAATAAAGTTCCATTCTTAACGAGTGGAACTTTATTTTGCTTGCATTTTTCTTTCTCTCTAAGCTTTCGTAACAACACTGATGTTAATTACTTTAAGCCATTTGA # Right flank : GAAAGTTGTTTAAAAAGTTGTAGGAGTGGAATATTTTTCGCACCTTTATACTTGTAAACCAAAGAGTTACAAATAAATACCCACTCCTATGACTGATACAAATTTAATAGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTTACCAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 56109-55415 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXEM01000014.1 Prevotella intermedia strain ATCC 15032 scaffold14.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 56108 36 100.0 29 .................................... GACCACTTGCAACATCTTCTTGTAAAATG 56043 36 100.0 30 .................................... ACTGAGTATTATATTTATCATTAGCATGTG 55977 36 100.0 30 .................................... TATCGGGAGGTAATTCTTTCAATGCTATAA 55911 36 100.0 29 .................................... ATTATGGGCTTGTTCGTTCCTTTTGAAAT 55846 36 100.0 29 .................................... GCATCAATTGCTTTTTCCATAGACGGATA 55781 36 100.0 29 .................................... TCTGTTTTTTCTATTTCCATAATTCTGTA 55716 36 100.0 30 .................................... CATATATGTTTAATCAGTTTCATCAAATAA 55650 36 100.0 30 .................................... ACATTGGCATCAATTGTCGTATTAGATCCG 55584 36 97.2 30 ................A................... AAGTATTGTAATAGCTTGCTAGAGATTGTT 55518 36 97.2 32 ................A................... CTTGATTGTTGCATAAATTTGAAACATAGGGG 55450 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ================================ ================== 11 36 99.0 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTTGAGAATATTGAGCGTGCAAAGTACGAAGCCATACTGAAGGCGCACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATATTGGTGTGGGAGCAGCCTAAGGGCGGTGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGGCTGCTACTTACTGCGAAGGACAACCCCGATGAGAAGATAATGATAGATAAACCAGAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGGAAAGAAAGGAACAAAACATATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGGGGGAAGTAAAAACGGAAGGGGAAACACGCCTTTCTATGAGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCGAAACTATTGCGTAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGCGGTTTTACGTTGTGGAAAGTGTAGAGGTTGTGGCGTGGCTTCGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGCAAGGGTGGTTGGGGCTTCTGCATCGGCTTGATGCGGTGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGCGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAGGATAAGATGTTTTCTCATATCGTCATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : GTTGCATCTGCCTGCTATTTGCAAGGTAAAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //