Array 1 153029-153179 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000069.1 Streptomyces albus strain DSM 40763 scaffold3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153029 29 89.7 32 .................G..GA....... CACATACGGCCGTACTTCGCGCGTTACAACGT 153090 29 100.0 32 ............................. ACGAGGCACGGATGGGCTCCGCCCAGTACGTG 153151 29 72.4 0 ..................C.GGG.AGGG. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 87.4 32 GTGCTCCCCGCGCCCGCAGGTTTGGTCCC # Left flank : CGGCGACGTCCACATCGACAGCGGACGCAACCACGGAGAAGAGCCCCTCTGGTGACCGTCATCATCCTCACCACCTGCCCCGCCGGACTCCGCGGTTTCCTCACCCGCTGGCTTCTCGAACTCTCACCCGGCGTCTTCCTCGGTGCCCCCTCCGCCCGCATCCGGAGCATCCTGTGGGACGAAGTCCGCCAGTAGGCCGGGCAAGGCCGCGCACTCCTCGCCTACCAGACCGACAACGAACAAGGCTTCGCCTTCGAAACCCACAGCCACCCCTGGCACCCCATCGACCACGAGGGACTCACCCTCCTCCACCGCCCCACCACCACCCCCAGTGCGCCGGCTGCCGCTCCCGATACCCCACCGCGAGGCTGGAGCAAGGCAGCCCAACGCCGCCGCTTCCGACGCACATAACCCGCCCAGAAACAGATGCCCTATATGCCCGACTCGGCGAAAGTGAGTAAAACCCGCCCCACCCGCAGTAAAACCCCACGTCGCGCCCT # Right flank : CTTAGCCGTCGCTGCGTGGCTCGGTCCTCCGAGGCGACCGCTACCGTCGCCTCCTTCTTTCTGCTCTCACCGGCTCCCGTCCTGCGGTTCTGAGGGCGAGGCGGTGCAGCTGGAGTCCTCTGCGTCCTCAATCGCCGAGTGGCCTCGCGGCCCCGGTAGCCGGCGCTCGCGTTTGGTGCCGCTTGCTACGTGGGCCGGTATTGATCGGCCCGTGCGCGAGAGGCAGGGGCCCATGCGCGCACGGGCTAACGAGGTGATATCCCCTCTACCCTTCTCGTTGGCAATTGGAAACTTCCGTCAGGGTCCGTCTTCGACAGGGGGTGCACCGGGGTCCGTGAAGTACACCGCGCTCGGGGAGCGGATCAAGCAACTGCGGGGCCGGATCATCCAGAACGCCCTGGGCTTCCTGTCCGAAGCGCTTCGGGTCGCCCGCGCATCTGGGATGCCGGGGAAACACCCCGACGAAGCCGTTGTCGTGCTGGACGATGACCACGTGGGCG # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCAGGTTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCAGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78508-78356 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000087.1 Streptomyces albus strain DSM 40763 scaffold18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 78507 29 100.0 32 ............................. CGACCAGGGTGCGGGCGCGGTGCATCAGGCCA 78446 29 100.0 33 ............................. ACGGCTGGGGGGAGGGCCGGGCAGCGCGCTCCG 78384 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ================================= ================== 3 29 98.9 33 CTGCTCTCCGCCCGCGCGGAGGTGATCCG # Left flank : CGGAGGTGATCCGAAGGACTAGAGCGGGTGCCCTCCTTCGAGCAGGTGCTCTCCGCCTGCGCGGAGGTAGTCCGAGAGGCCGCCCGGTCAGTCCCCTGGGGGATTGCTAGTGGAGGTCGGTCGGTGGTGCCTGTGGTGGGCGTCGCTTGTTGAGGTTGCCCTCGGTCCTCTTCGACGATGCTGTCTGCTGGCACGGGGCGTGCGCTGGGCCTGTGTTGAGGCGGTCCGGCCCTGGACGGCACGTTCGTCGGCACAGGGCGGTCCGGCTCCTGGCACTGCCCGCCGCCTCGGTGGTGAGGATGAGGTTGTCCTGCCGACGCGTCAGACGGCATCGGCAGTGACAGCTGGGCGGGCACGGCCGTGACGGGCTGGTCTGCCGGGACTGGGCGGCGGCTTCGCGGCTGCACTACTGTCCTCCCCGTGCAGTGCCACCTTCTCGTCCGCACCTCCGTGCAGGTCAAGGATCTGCAAAGCGGTTCGTGAGCCGCAGGTCAGAAAGG # Right flank : TTGCCCATGGTGTCGCCCGCGCCCCCGCCGGGGTGCTCTGCGCGGAGGTGATCCGGCCCACGATGCGCTGATTGCGGCGCAGGAGGCGAGCATCCGATGGAGTTGATCAGGGCGCCGGATCACGCACGTTTTCGCCGCCCAGCGTGCCTGCGAGTGCCCACCACGACCATCACGCGGGTCTCTACTCAATGACACCGTTACGGATGACGCTGATGCCGTTGTCGCGGTGCCAGTCATGAAGCATCTCGTTCACAGCCTGCTCATCGGGCAGTAGGGCCCCGGTGAGCCTCGACGGCGACTTCACGACAGCGGCTCCGATCATGCCGGGAGGTCGCCTCAGTGACGTCTCGAGCTTTGCTCTCCTCACACGGTCCTGCCCAGCGGCGTCGGCTGCGGGACCGCGGCTGCCGTCCCTGCTTCCCGCGCCGCGTGCTCTGCTCGGGCCCGGCGCAGGACCGCGGCGTGGGAGGCGTCGGCCTGGCGGCGGTGCTCGGTGCGGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCGCCCGCGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79451-78934 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000087.1 Streptomyces albus strain DSM 40763 scaffold18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79450 29 100.0 32 ............................. CGGCTCGCGGAGGATGAGCGTGTGCCGGTGGG 79389 29 100.0 32 ............................. ACTTTCTGGTGGAACTGGCTGAGCGGCCGGTC 79328 29 100.0 32 ............................. CAGGAGGCACGCACAGCATGTCCGAGACCGAC 79267 29 100.0 32 ............................. GAAACACCACAAATCAGGCGGGCCGGAGCCCG 79206 29 100.0 32 ............................. GAAACACAGAATCAGGAGCGCCGCCGGGAGCT 79145 29 100.0 33 ............................. GGAACCGGGCTCCATTCCCGGGCCCCTCCGGGC 79083 29 100.0 31 ............................. GCACATGTCAGGGCCCCCAGAGCCGACAATC 79023 29 96.6 32 ...........C................. AAGGACTAGAGCGGGTGCCCTCCTTCGAGCAG 78962 29 86.2 0 ...........CT..........AG.... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 98.1 32 GTGCTCTCCGCTCGCGCGGAGGTGATCCG # Left flank : GCGGAGGTGATCCGTACACGCTGTTCCTGGACCAGGACGCCGCCTTGGCGCTCTCCGCTGGCACGGAGGTAGTCCGAAAGGCCGCCGGTCAGTCCCCTGCGGGATTGCGAATGGAGGTCGGTCGGTGGTGCCTGCGGTGAGCGTCGCTTGCTGCGGTTGCCTTGGTCCTCCTCGACGATGCTGTCTGCTGGCGCGGGATGTGCTCTGGGCCTGCGTTGAGGCGGTCCGGCCCTGAACGGCCCGTCCCTCGCACAGGGCGGTCCGGCTCCTGGTAATTCCCCGCCGCCCTGGAAGTGAGGTTGTCCTGTCTACGCGTCAGATGGCGTTGGCAGTGGGGGCTGGGCGAGTACGGCCTGGCGAGCGTCGCCTGCTGGGGCTGGCTGGGTTGCGGCTCTACGGCTGCGCTACTGTCGTCCCCCGTGCAGTACCACCTTCCGGGTTCGCATCGCTTTACGGGTCAAGGATTTGCAAAGCGGTCCGTGAGTCGCAGGTCAGGAAGG # Right flank : AGAGGCCGCCCGGTCAGTCCCCTGGGGGATTGCTAGTGGAGGTCGGTCGGTGGTGCCTGTGGTGGGCGTCGCTTGTTGAGGTTGCCCTCGGTCCTCTTCGACGATGCTGTCTGCTGGCACGGGGCGTGCGCTGGGCCTGTGTTGAGGCGGTCCGGCCCTGGACGGCACGTTCGTCGGCACAGGGCGGTCCGGCTCCTGGCACTGCCCGCCGCCTCGGTGGTGAGGATGAGGTTGTCCTGCCGACGCGTCAGACGGCATCGGCAGTGACAGCTGGGCGGGCACGGCCGTGACGGGCTGGTCTGCCGGGACTGGGCGGCGGCTTCGCGGCTGCACTACTGTCCTCCCCGTGCAGTGCCACCTTCTCGTCCGCACCTCCGTGCAGGTCAAGGATCTGCAAAGCGGTTCGTGAGCCGCAGGTCAGAAAGGCTGCTCTCCGCCCGCGCGGAGGTGATCCGCGACCAGGGTGCGGGCGCGGTGCATCAGGCCACTGCTCTCCGCCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCTCGCGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.00,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 81790-81334 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000087.1 Streptomyces albus strain DSM 40763 scaffold18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81789 29 93.1 32 ...........CT................ AGGTGTGCCGCTCGTAATGCATGAGGTGTGAC 81728 29 93.1 32 ...........CT................ CGGACTTGAACGACGAATTCGGGCCGCATCAT 81667 29 100.0 32 ............................. TACGCGAGGTGCCCGCTCATGACGTGCTCTCC 81606 29 100.0 32 ............................. GCCCGGTCCCGGGCGCGGAACTTGAGGGCGGG 81545 29 100.0 32 ............................. CTCGACGCGGCGGCCCCCATCCAGGGGCAGAC 81484 29 100.0 32 ............................. CTCCGTGCGGTGATGAGCTTCGCGACATACAG 81423 29 93.1 32 ...........C............G.... CCGAGCTAGCCCGGTGCACTGCAGAGCTGGCG 81362 29 75.9 0 ...T.TC....CTA..............A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.4 32 GTGCTCTCCGCACGCGCGGAGGTGATCCG # Left flank : GAAGTGCCGCAGCGTGTTTGTTTGCTCTCCGCACGCGCGGAGGTGATCCGCTCACCACCTCGCAGAAGACCGCCCTCCGCCTGTGCTCTCCGCCCACGGGGAGGTGATCCGGAGTACGCGACGCTGCAGCGTCTTCTGGAGGCGTGCTCTCCGCCCCTGCGGAGGTGTTCCGAGCCAGCGATCTGCGGTGCGCTGGTGCGTTGTGCGTGCTCTGGGCTCGGGCGGAGGGGGTCCAGCCTTCGATGGTCCGCCTGCTGGCACAGGGCAGTCCCGCTCTTGTCATTCCCCGCTGCCTTGGTGGTGGGGTTGTCCTGTCGGTGCGTCAGGCGCGTTGGCCGTGGGGCTGAGCGGGTGTGGCTGTGGCGAGCGTGGTCTGCTGGGTCTGGGTGGCGGCTCGGCGGCTGCACTACTGTCGTCCCCGTGCAGTCCAACCCTCTGGTTCGCATCGCTCTGCTGGTCAAGGATCTGCAAAGGGGTTAGTGAGCCGCAGGTCAGGAAGG # Right flank : GCTCTGGCCCTCTGCTTCACGGTTCAATGGGGGATGCCGTCGATGATGTCGCGGGCGTCCTGGCGGGGCAGCTCGGCGCATACCCGGCTCCCCAGCGTGCCGGGGTCGTTGGAGGTCTCGCCCCAGATATGGGCGTGCGCGAACGGTGGGCGTATGGCCGCTGCACCGATCGTCGTCTTTCCGCCCGACGAGGATGGCGGACGCCGCGTCCGCGGCCGAGGCGCGATCCTCGGCCGCGCCTACAGCACCGCCGACGCGCTGGGATTCCTCCGCCGCGCCGGCCTCGACCCCGACGACGTGACGCTGGACGACCCGGGTTGATCGAATGGCGCGGCGGTGGCCCCGACGTGTGGCAGCCAGGCGACGCCTGATCCGCCTACCGGGCGACGGTGCCAGCCAGATCCACGAGCAGTTGCGCTACAGCCACCAGCAGAGCCCACCGGCCCCAGTCCGCACGGCGTCGGTCCGCGTTCATCTGTCCACCTCCGTGATCCGGTTCC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCACGCGCGGAGGTGATCCG # Alternate repeat : GTGCTCTCCGCCTGCGCGGAGGTGATCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 82696-82055 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000087.1 Streptomyces albus strain DSM 40763 scaffold18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 82695 29 100.0 32 ............................. TACCGGGCTGCGGAGATCATCCTGGTTCCGGC 82634 29 100.0 32 ............................. GCCCCGGGCTCCGGCAGGCAACGGCCGGGGCC 82573 29 100.0 32 ............................. ACGTTGGTGCCGTTGGGGAAGCGGCGAATCCG 82512 29 100.0 32 ............................. GCACGGGTGAGGGCGGCTGCCGCGCCGGTCTG 82451 29 100.0 32 ............................. GCGGACAGCGTGGTGCCGTCCAGCGCGCGGCG 82390 29 100.0 32 ............................. GTGTGCCGCCGCGTTGGTCGCGATCATCAGCC 82329 29 96.6 32 ............................C GGCTGCCGGGCGAAGTGCCGCAGCGTGTTTGT 82268 29 89.7 32 T..........AC................ CTCACCACCTCGCAGAAGACCGCCCTCCGCCT 82207 29 89.7 32 ............CA..G............ GAGTACGCGACGCTGCAGCGTCTTCTGGAGGC 82146 29 86.2 34 ............CCT.........T.... AGCCAGCGATCTGCGGTGCGCTGGTGCGTTGTGC 82083 29 72.4 0 .......GG..TC.G.......G.G...A | ========== ====== ====== ====== ============================= ================================== ================== 11 29 94.1 32 GTGCTCTCCGCCTGCGCGGAGGTGATCCG # Left flank : GACCCGTCGCGGGAAGTGCTCTCCGCCCACGCGGAGGTGGTCCGAGCAGGCCGAGCAGGAGCCGACGACGACGGAGGTGCTCTCCGCCCGCGTGGAGGTGATCCGCAGCTCTCTGGCGGCGCCTGTACCGGGGTGAGGTGCTCTCCGCACGCGCGGAGGTGATCCGATGCGGCTCCTCCGGCTCGCTGCGGACGCCACGTGCTCTCCGCCTGCGCGGAGGTGATCCGCCGGGCGTGTGGGGTGGCATGGCGCAGGGGTCTCCGCCAGTCCGGCTCGTGTCACTTTCCGCTGCCTTGGTGGTGGGGTTGTCCTGTCGGTGCGTCAGGCGGCGTTGGCCGTGGGGTTGGGCGGGTGCGGCTGCGGCGAGCGTCGCCTGCTGGGTCTGGGTGGCGGCTCGGCGGCTGCACTACTGTCGTCCCCGTGCAGTCCAACCCTCCGGTTCGCATCGCTCTGCTGGTCAAGGATCTGCAATGCGGTCTTTGAGTCGCAGGTCAGGAAGG # Right flank : GCCTTCGATGGTCCGCCTGCTGGCACAGGGCAGTCCCGCTCTTGTCATTCCCCGCTGCCTTGGTGGTGGGGTTGTCCTGTCGGTGCGTCAGGCGCGTTGGCCGTGGGGCTGAGCGGGTGTGGCTGTGGCGAGCGTGGTCTGCTGGGTCTGGGTGGCGGCTCGGCGGCTGCACTACTGTCGTCCCCGTGCAGTCCAACCCTCTGGTTCGCATCGCTCTGCTGGTCAAGGATCTGCAAAGGGGTTAGTGAGCCGCAGGTCAGGAAGGGTGCTCTCCGCCTGCGCGGAGGTGATCCGAGGTGTGCCGCTCGTAATGCATGAGGTGTGACGTGCTCTCCGCCTGCGCGGAGGTGATCCGCGGACTTGAACGACGAATTCGGGCCGCATCATGTGCTCTCCGCACGCGCGGAGGTGATCCGTACGCGAGGTGCCCGCTCATGACGTGCTCTCCGTGCTCTCCGCACGCGCGGAGGTGATCCGGCCCGGTCCCGGGCGCGGAACTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCCTGCGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 83304-82969 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000087.1 Streptomyces albus strain DSM 40763 scaffold18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83303 29 96.6 33 ............................A GCACCTCGACGCCATCCGCCCCCACAACACGAA 83241 29 100.0 32 ............................. CGCAGGAAGGCCGGGCTGACCCGTCGCGGGAA 83180 29 100.0 32 ............................. AGCAGGCCGAGCAGGAGCCGACGACGACGGAG 83119 29 89.7 32 .............G..T.......A.... CAGCTCTCTGGCGGCGCCTGTACCGGGGTGAG 83058 29 89.7 32 ...........A.G..........A.... ATGCGGCTCCTCCGGCTCGCTGCGGACGCCAC 82997 29 89.7 0 ............TG..........A.... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 94.3 32 GTGCTCTCCGCCCACGCGGAGGTGGTCCG # Left flank : TCGCCCAAACCCAACTACCGGACAGACGCGTGCTCTCCGCCTGCGCGGAGGTGATCCGTTCCGTGTGGCGGAAGCCTCGGTGCGGGCCCCTGGCCCTCCCCTGCGTGAGGTGTTCCGAGCCAGTGATCGGCGGCGCGTTGGTGGGGTGTCGTGGTGCTCTGGGCCCGAGCGGAGGCGGTCCGGACCTCGACGGTTCGCCTGCCGGCACGGGGCAGTCCGGCGCCTCCCCCGCCGCCCTGGCGGGGAGGTTTTCCTGTCGGTGCACCAGGTGGTGCTGGCAGGGACCGGGGCGCGGCAGCGGTGGGCGGATGCTGTGTGAGGTGTGCGTTCAGGCCCGTGGGCAACTGCGGCTGGCGCACAACGACGCGGCTTCCCCACACCCCGCGGTGCCGTAGCTATGGCTGCACTACTGTCGTCCCTGTGCAGTGCCACCTTCCGGTCCGCACCTCCGTGCAGGTCAAGGATCTGCAAAGGGGTTAGTGAGCCGCAGGTCAGGAAGG # Right flank : CCGGGCGTGTGGGGTGGCATGGCGCAGGGGTCTCCGCCAGTCCGGCTCGTGTCACTTTCCGCTGCCTTGGTGGTGGGGTTGTCCTGTCGGTGCGTCAGGCGGCGTTGGCCGTGGGGTTGGGCGGGTGCGGCTGCGGCGAGCGTCGCCTGCTGGGTCTGGGTGGCGGCTCGGCGGCTGCACTACTGTCGTCCCCGTGCAGTCCAACCCTCCGGTTCGCATCGCTCTGCTGGTCAAGGATCTGCAATGCGGTCTTTGAGTCGCAGGTCAGGAAGGGTGCTCTCCGCCTGCGCGGAGGTGATCCGTACCGGGCTGCGGAGATCATCCTGGTTCCGGCGTGCTCTCCGCCTGCGCGGAGGTGATCCGGCCCCGGGCTCCGGCAGGCAACGGCCGGGGCCGTGCTCTCCGCCTGCGCGGAGGTGATCCGACGTTGGTGCCGTTGGGGAAGCGGCGAATCCGGTGCTCTCCGCCTGCGCGGAGGTGATCCGGCACGGGTGAGGGCG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCCCACGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 86293-85898 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000087.1 Streptomyces albus strain DSM 40763 scaffold18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86292 29 100.0 32 ............................. CGCGACCGGGACCTGTTGGGGTGGCTCGCGAT 86231 29 100.0 32 ............................. TACAAGCAGGCTCTGGCCGACATGACGCCGGC 86170 29 100.0 32 ............................. ACGGTGGCGAAGCTCGCGGCAGTCTCGGGCAT 86109 29 96.6 32 ...................C......... CGAGGTGACCCCATGCATCACACCCAGCACCC 86048 29 93.1 32 ............C.C.............. CCGATTCTCGGGCCGATGTCCGGCTGGGACTT 85987 29 93.1 32 ..............C..T........... AACGCCAAGGACGCCCGCCGGCCGCACCCCAC 85926 29 75.9 0 ......C.......C....GAA..G...T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.1 32 GTGCTCTCCGCCTGTGCGGAGGTGATCCG # Left flank : AGATGCGACTCCCAACACTAGACAGTCGGTCTGTCACTGACATGAGCCCGGTGCACCGGACACCTCGGGCACGAACCGACCGGCCGCACCACTTCGGGAGAGAACCGGCACTTGTCTGCAAGACCTTGGACACGGACGCGCTCCCCCACCTACGCGGGAGGCGCTCCGAGCACCCCCCACTGCATGCCGTGTTCTTCACCCATGTGGAGACCGGCCCCTGCCAGTCCCCGCCGCCCTGGTGGTTGTTGTTGGCCTGCCGATGCGTCAGGTGGTGTTGGCACGCCCCCGGGACACAGCGGCAGCGAGCGGATACCGCTTGAGGCGTTCACGCAGGCCAGTGGGCAACTGCGGCTGGCCACAACGAAGCTACGTCCTCACGCCCCCTCGGCGTCGTGCTGCGGCTGCACTACTGTCGTCCCCATGCAGTTCAGCCTCCCGCTTCGCACCGCCCCGCAGGTCACGAATCTGCAAAGCGGTCCGTGAGCCGCAGGTCAGAAAGG # Right flank : TGACCAGGCTTTCTGGGCTCGAAATGGCACAGCGCCTTCGGAGCCCCCGGGGGGGCCTTATCCACGGGGATTAACCGAGGAACTCAAAAGGGGTGCACCTGTTCCCGGCGTCAGGGTCTACGCCCCTTCGGGTGGTGTATTCTCATGGTCATTACCTCTTCGGCTGTCCGGGTGGGCGCCAGCTGGTCTCATCCGGCGAGAGGAGGTGACAGGTGGACAGCACCGGCAAGGAGTCCCCCACGGGGGGTGAGGAGCCGGTGTGGGCGAAGCTTCTTCGCCGGGCCGCAGACGCGGCCCGGCTGGCAGGCTCCATGATGCAGGCCGTGTACTACGGCCTGAAGATCTGGTGACCTGCGGCTAGAGAAGCAGATGGGCCCTACCCCGGCCAGGGTGGGCCCATCTAGTCCGACACCGCTTGAGAGCCCCGCGTGATGCATACCCAGTGCGAGCGTGGGGCTCTCTCATGTGGACTGTAAGGCGACGACATCAACTCGTCTGAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCCTGTGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.10,-10.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 96580-95757 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000087.1 Streptomyces albus strain DSM 40763 scaffold18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96579 29 100.0 32 ............................. GCATCCGTGTCCGGCGCCGTCTGCGCGTCACA 96518 29 100.0 32 ............................. GCGGCTTGGAGGGCGGCGAGGTCGGCGTTCTC 96457 29 100.0 32 ............................. CCGAGCAGGCCCTGGGCGCGGAGCGAGCCAGC 96396 29 100.0 32 ............................. TGCTTCTCGGGGTCGGGCGGCCACCCGCCCCC 96335 29 100.0 32 ............................. CCGGGAGGACGGCCACCTACGGAAGAAGCAGG 96274 29 100.0 32 ............................. TTGGCTGGTGTAGAGACCGTCGGACTCGGGGG 96213 29 100.0 32 ............................. GCCAAGGACACCCGTCGGTTCGACCAGTCCCA 96152 29 100.0 32 ............................. GCGAACGGCGCGGGTACACTCCCCGGAGACCT 96091 29 100.0 32 ............................. CACACCCCGCCTCCCCCGGCGGAGGACCCTGC 96030 29 100.0 32 ............................. GAAGATGCGGCGTATCACTGGACCGAGCGGCG 95969 29 96.6 32 .............G............... TCGCACGGGTTCTGGGCCTGGTCGAACACCGA 95908 29 93.1 32 ..G..........G............... GAAGAGGCCATCTGATGACCCAGCCCACTCCT 95847 29 86.2 32 ..G.........GG...T........... CCTCCGCACGACAGGCGCTCGCGTCCCTGCGC 95786 29 79.3 0 ..G......A..TG............T.T | G [95763] ========== ====== ====== ====== ============================= ================================ ================== 14 29 96.8 32 GTCCTCTCCGCCCACGCGGAGGTGATCCG # Left flank : TCCCATACCCCAACCGCGCCAGCGGACCGAACACCGAGAACATCGACGCACGCGCATGCCCCATGCGCTCGACCACACCCACATCCCTGCGAAGCGCCGCGCTCACACCCTCATACGCCCACGGCACACACCGCTGAAAACCCGGCGACAGCTTCCCCACATCATGAAGCCCCGCCCAAAACGCCACCAACCTCCTCGCCTCACCCTCAGAAACCCCCAGCCCCTCAGCGATACGCGCACGCTGCCCCGCCGCCAGGAACTCCTCCCACAACGCCGCAGCGATAGCCGCCGTATCCAGCAAATGGAACAACAGCGGATACACCACCCCCCGCTCCTCCAACGCCTTGCCCCACGGCGTCAGGTCCCCCCCACCAACACCCGCCACAACCCCTCCCCAGGTACGGTCAACTCGTGCACCTACCTAAACAGCACCCACTGACACTCCCGGAACCCTCGGTCAAGAAACTGCAAAGCCACCGCTAAGCCGCAGGTGAGGAAGT # Right flank : TCGAGTCCTGGCCGAACACTCGGTGGGCCCCACCATTCCGGTGGGGCCCACCGAGCGCGAGAGGACCGCTCACGGCCAGAAGAGTTTCACCTTGTCCGGGTCCGGCCTGGGGGGCACGACCTTCGGCCCGACGATCTCGTACCCCAGATCCCGCAACACCTCGACGGCTGCTTCCGGAGCGTCCCGCACCGCCGACTTCAGCTGAACAAGCCGCCACTCCGCCAAGTGCTTCGCAACGACGTCCCTCCAGCCGGGCTCCGTGTCGATGTGGAACTCGCGGTAGAGGAACAGCAGCACGTCTTCCAGGCACGGCCGCATCCGATGTCCCCCTACAGGCACATGCATCTCCGACAACCGCGGCATGCGGTCCCGCCTCAGGCCCGCACGAGGCCGGCCGTTCTCCGCCAACCGCAGCAGGTAGGCCATCTCATCCCGGTGAGCATGCACCTGCACATGAGCCCCCGGAGGGTTCTGCCACGTGCGCACGTACTCCCAGCGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCCCACGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 105821-106033 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000087.1 Streptomyces albus strain DSM 40763 scaffold18.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105821 29 100.0 32 ............................. CTGGCTGGTGTAGAGACCGTCGGACTCGGGGG 105882 29 100.0 32 ............................. GCGGAGGAGGCGCAGCGGGTCGCCGCCGCGGC 105943 29 100.0 32 ............................. TCCGGCCCGTCCTTGACCAGCCGCAGGGCCGG 106004 29 75.9 0 .............AT.........CGGAA | C [106026] ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGCTCTCCGCACGCGCGGAGGTGATCCG # Left flank : TCCCTCGCCTCGTCAAAGACATCCAGACCCTGCTGAACCCGCAAGCAGCCGCGGAGCAAGACGACACCGAACGGTTTGACGTCCCACTCGTCGACCTCTGGGACCCCAAACAGGGCGTCGCGCCAGCAGGAATCAACTACGCAGCACCACACTGATATGCCATCAATGACCGTTTTGGCCACCACTGCAGTACCCGACAGCCTCCGCGGTGCTCTCAGCCGCTGGACCATCGAAATCATCCCCGGCATCTTCGTCGGCACCGTCTCAGCCCGCGTACGCGATGAAATTTGGGCGGCAGCATCCGCCGTAGTGGGCGATGGCGCAGCCGTCCTTATCCACCCGGCATCCAACGAGCAAGGCTTCGCACTTCGCACCGCCGGACAACGCCGACGCATCCCCCACGACTTCGACGGACTCACCCTTATCCGCATGCAAGCAGCACAGCAGACCCTTGAGGTCAATAACAGGTAAAGCCTTTATGGAGCTGCAGGTCAGAAAGG # Right flank : AGAGCTCCCCAGCCTTTTGCCCGGCGACGAGTAGAAGACGCCCCACCTCGGTCTCACGTCAGGCGGCGTGAGACCGAGACGGGGCGACGGTCGCAGTCGTACAGCCGGCTGGTCATGCGGGCATGGAGCTGTCGGTCAGCGTGGCTGTCACATGCCGGGGTGCCATTCCGAGGCGGTGCGGGCGGTGGTGCGGGTGGCCCACCACCATGCGGTGGCGGCGAACGTGGTGGCGGCGGCGAGCAGGAGCAGCATGAAGGAGGCCGGCAGGGTGGCGCCTGCCATGGACACCATGGGGGAGCCCAGCCACCAGGCGGTGAGGCAGCCCAGCAGTGCGGCGAGGACCAGGGGCGCGCCCACCGCCCACAGGGCGGTCGTGGTGAAGACGCGCCGGTTGCCCGCCAGGACGGTGAGGGGTGCGAGCCGTCGTCCCAGGTGGAGGAAGTCTCCGAGGTTGTTGATGAGGGCTGCGAAGGCCAGCAGTGCGATGCCGAGGAAGCCGA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCACGCGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 204770-204436 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000055.1 Streptomyces albus strain DSM 40763 scaffold4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204769 29 96.6 32 ..........C.................. CTCGCCGTCGATGACCTGACATGGACGTGGGC 204708 29 89.7 32 ..........C..C...........C... ACGCGCTGTGTGCCCGTGCTCCTGGCGGTGGT 204647 29 100.0 32 ............................. TGCGCCCCTTCCGCCCGGTGTGCAACCACCGG 204586 29 100.0 32 ............................. AGCGCGGTGCGGGGATCGTCGAAGGCGACGGG 204525 29 100.0 32 ............................. GATCCGCGTCTCCGGCGACTCCGGCCACACCT 204464 29 93.1 0 ..........C..C............... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGCTCCCCGTACGTGCGGGGATGGTCCC # Left flank : CCGGCGTCGCCTTCCCAACGTCGTGCACCCCGGCGAGCCATACGGCCAAGGCACGGGCGTCGGCGAACCCACCGAGAAGGGCCTGGGCAACGAGGCGCTTCACCTGCTCGGGCAACCACCGGTCCCAGAGCAGCCCGGCCGTGGCAGCGCTGTCGGACATGTGCCGCCAGAGGGGTAGGTAACCGTCATCCGCATAGGACGACTTGGCCCACGCCGCGCGCGCCCCCGGGGACAGCCGCTTACCGAGCCGCCGCCCCCGTACTTTCTCCCCCACCGCCTACCTCCGCTGTTCCCGGCCCCGTCACACGAATGACGCCGGGCTCGAACGCCACCCCAACCGGCAGTATGCGCACGCGCGGAGCAGTCGTGGGGAGAGTTGACAATATGGACCGGAACTACTCAGCCCCGCGTCCCTTTTGAACTGTTGGTGAGGTATGCACCATTCAATGAAAGTGAATCCCACGGCCACCGGCAACGGATAAACCCGCAGGTCACCGAGT # Right flank : CTCCACGGGCCGGGCCAGCAGGGCAAGTCCAGACCTGCGGAAACGCTCCGGAGGAACGTTTCCGCAGGCCAGAACGATTCTGCTGGGTGGGGCGGGTGGGACTCGAACCCACGGCCGACGGATTATGAGTCCGCTGCTCTAACCGGCTGAGCTACCGCCCCGTAACGGCGCGCCGCGCACGAATGTGCGCGCCGTCTGCCGCAGCATAACCGTTCATAGGATCTGCCGCCCGCGGCGGGGGAGATCTACGCAGGTGAGGACCCCAGGCAAGGGGTGAACGGTTCCCGCTCCCGCCGACTTCCGCGAAGATCGCCGGAAAAGGGCGGAAAAGCACCCGTCGGCTCCGCCCTCCCCGGCCGCCCCCTCGCCGCGCGGACAGCGCCGGCCGCATCACCGCGCACCGGCCCCGGCATACCACCGCGCACCGCCCCGGGCGTACGGCACCGCCCCAGGCATACGAAAAGGACCCCCGAGGGGGCCCTTTCCTTCTTGCTCCCGCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGTACGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 460319-459500 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIY01000055.1 Streptomyces albus strain DSM 40763 scaffold4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 460318 28 100.0 33 ............................ CCCCATCAAAATGCGGTGGATGACGGCGCAGCA 460257 28 100.0 33 ............................ CGGCCGCGAGAGCGCCGTTTTTTGGCTTCCTTG 460196 28 100.0 33 ............................ CACGACGATCCCGATGTCGACCCCGATGGGGAA 460135 28 100.0 33 ............................ CTGCCCTTCGGCTTTCTCCCGGAACTTCATCCC 460074 28 100.0 33 ............................ CGACCGGCACTTCACCCCAATCCGCGGGGCCCT 460013 28 100.0 33 ............................ CAGCGGAGGGTGCGACTGATGGGCCGACGGCGG 459952 28 100.0 33 ............................ CCCGGCAGCAGCGGTGTCTACTCCCTCACGTGC 459891 28 100.0 32 ............................ TGCGCCGCTACCGCACGGCTGCCGGCCCGGTG 459831 28 100.0 33 ............................ CACATACGCGATCTGGTACGGGCCGATCTTCTC 459770 28 100.0 33 ............................ CATCGTCCATGCCCCGAACCCGTGGGCGGCGCC 459709 28 100.0 33 ............................ CCGAGCCTGACGAAGCCGCACCCGAGACGGGCG 459648 28 100.0 33 ............................ CCGCGATTCCACGAGCCGGGTCCACGGGGCGGT 459587 28 96.4 33 .........................C.. CAGGTGCCAGACGTCCGCGTCGGTGATGGTGAA 459526 27 67.9 0 ....CG.....C.C...ATA..-..C.. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.5 33 GTGCTCCCCGCACGCGCGGGGTTGGTCC # Left flank : TTCGGCGCAGGCGGGGCGGATCGGCGTCCGGGGCTGCCTTGTCCAACCCGCAGGCGCCTCCGCGACGTGACGTCCGACGCGCATACCCATGGGTTGCCGCGCCAGGCGAAACGGAACGCGTCTCGTTCGCTCCTACCGGCCGAATGCGGCCAGCTCCACGAGCAGCTGCGCCATAGCCACCAGCAGCGCCCACCGGCACCAGTCCACACGGCGTCGGTCCGCGCCCAGCTACCCACCTCCATGATCCGTTCCCGGGACCGTAGAACGGGGCGCGAGGTACCCGGAGCGGAGTACCCACAGACAGGCCGGATCGTCATACCGGAGGCTCACCCTTTGGATGAAGGGCTCGTCGGACTGGAGGCTGACCAGCCCTCGCAGTGGCCCAGCTGACACCCTTCGGCAGGGTTTCGACTCCTAATGGGAGAACGCCCGGAAGGTCCGAGTCGTGGGAAGTGGTTAGAATCGGCCCTCGACTGGCGAAACGCTGCTGGTCAGCTCCT # Right flank : CGCCGGCACCGCTCGGCGGGGCCGTCCATCCACAACAGTCAGCACGGTGGATAGGAGCACTCCCGAGCCTCCCACCACATACGGCCAGCCCCCGGAAACACGAGAACGCCCCGCCACCGACGATGGCGGGGCACCTCCACACCAGGAGGTGCCGCTACCGTGCAGCGAGTTCGTACAGCGTCAGCACCAGCGCAGCCAGCCCGGTCAGCGCAGCGACCGACGGAAGAGGCCACCGGGCACGCTTCAGGTCCTCGACAGCGGCCCGCAGGCCGGTGATGTCCTGATCGTGGTCCTCGCGCAGCCGCCGCACGTCCTCCTCGGCATGGTCGGTGCGCTCCAGCACCACGTCCAGGCGCCTGCCCAGCCGCGCGAAACCTGCCTCGCTCGCGATCGCTTCTCAGCTGTCCTGAACAGCACGTGCACGTAGGCGCTCGTCGCCGCTGACGAAGGAGATGACCGACGCCGCTCCCCGGTGGGCGCGTGCACCGAGCACGGTTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //