Array 1 82966-84029 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTI01000005.1 Salmonella enterica strain BCW_3381 NODE_5_length_258431_cov_3.12609, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82966 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 83027 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 83088 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 83149 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 83210 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 83271 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 83332 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 83393 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 83454 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 83515 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 83576 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 83637 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 83698 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 83759 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 83820 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 83881 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 83942 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 84002 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100699-102436 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTI01000005.1 Salmonella enterica strain BCW_3381 NODE_5_length_258431_cov_3.12609, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100699 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 100760 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 100821 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 100882 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 100943 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 101004 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 101065 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 101126 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 101187 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 101248 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 101309 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 101370 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 101431 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 101492 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 101553 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 101614 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 101675 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 101736 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 101797 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 101858 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 101919 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 101980 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 102041 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 102102 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 102163 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 102224 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 102285 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 102346 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 102407 29 100.0 0 ............................. | A [102434] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //