Array 1 2948-1456 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXC02000105.1 Salmonella enterica subsp. enterica serovar Anatum strain HIY0078 NODE_105_length_8263_cov_10.613078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2947 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 2886 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 2825 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 2764 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 2703 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 2642 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 2581 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 2520 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 2459 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 2398 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 2337 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 2276 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 2215 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 2154 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 2093 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 2032 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 1971 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 1910 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1849 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 1788 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 1727 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1666 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1605 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1544 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1483 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //