Array 1 865-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOK01000140.1 Planobispora takensis strain NBRC 109077 sequence140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 864 29 100.0 32 ............................. TCGTCATGTGACTTTCTCCATTACTGCCGTTG 803 29 100.0 32 ............................. GCGTGCGAGAGCTCCCGTAGTGCTACGGAAGT 742 29 100.0 32 ............................. TTCTTAGCCGTTGTGTCTACGTTCTCACCCTT 681 29 100.0 32 ............................. CGTGGTGGGACTGAGGACCTCACCATGGAGAT 620 29 100.0 32 ............................. GCCCGGCCCCGCTCAGCGAGCACCGCGCGGGC 559 29 100.0 32 ............................. GCGCCGTCGCGGCGTCGCGCGCGTTACGGACC 498 29 100.0 32 ............................. TCGTCCGGAGTCCAGCCGGTTCCGGCAATGTC 437 29 100.0 32 ............................. TCACCGATGCCGGTCGGCGTCGGGACGGTCAG 376 29 96.6 32 ............................C TCCACCGTGCCGCCGGCGCCGGCGATCTGGTA 315 29 100.0 32 ............................. AACCTGTTTGCCCGGCAGGACGCCTACGAGCG 254 29 100.0 32 ............................. TAACACGGAACCGTGTTATCTCCGCTGAGATC 193 29 100.0 32 ............................. CCGAACTCACTGTCACCTGCCAGTGCGGCTAC 132 29 100.0 32 ............................. ACGATCCATCCGCGATTTTCAGGATCGTCGTC 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CCGAGTCGTAGACCTGCCACCGGAAACCTCAAGTGTGATTGTGAAATACCAGGTCAGTAAG # Right flank : GCTGCGTCAGCCGTATCTGCCCATTGTCGGTGGAACGCGAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-2255 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOK01000069.1 Planobispora takensis strain NBRC 109077 sequence069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32 29 100.0 33 ............................. GAGACCACGATGTCGAGCATGACCCTGCTGAAC 94 29 100.0 32 ............................. GAGCGAGGAACGTCTATCGTTGGGGTGGTACT 155 29 100.0 32 ............................. ACGCCCAAGCCCGCGAGGCCATCGCCCGCGCC 216 29 100.0 32 ............................. GTCCAGGGCCGCATGAGCGCCGTCGAGGCCGC 277 29 100.0 32 ............................. ACCCAAGGAACGGCCCCCTCACCATGGACACC 338 29 100.0 32 ............................. TCCAGGCGCTCCATGGTCAGCATCGGCGTGAC 399 29 100.0 32 ............................. CGAACGCCGCGCTGCACTGCTCGTCCAACGTC 460 29 100.0 32 ............................. TCCTCCCGTTCGCCGCGCCCGGCGGCCACCAC 521 29 100.0 32 ............................. CTCCTTGAGATTGGGTTAGGCGGCGATCTGGT 582 29 100.0 32 ............................. CACCGCAACGCCTGGGCCGCCTCCCGGTGGAA 643 29 100.0 32 ............................. TCGGCTTGTACGCGCGTGTCGCCATGGGATGT 704 28 96.6 32 .....................-....... CCAGGAGGCGGCATCTCGGATGTACTTGGCTG 764 29 100.0 32 ............................. TCGGGTACCTGAACGTCGGTGGCGAGGGTCCG 825 29 100.0 32 ............................. ACGGCCAGGAACTGCCGGAGATCCACCCCTCC 886 29 100.0 32 ............................. TTGTCCCACATGCTGACCAGCAGATGGAGGGA 947 29 100.0 32 ............................. GGTGACGAGTAATGCCCGCAACCGCCATGCCG 1008 29 96.6 32 ..........................T.. TGCCCGGACCCGCACACAGGCTGGCACGTCCC 1069 29 100.0 32 ............................. GCTCCGTTGATGTCGCGGAGGATGCCGTTGAT 1130 29 100.0 32 ............................. ACCTCCGGGGAGTGATGTCCCGGCGCGGGGCG 1191 29 100.0 32 ............................. TCGGGCACGCCCGCGTCCGGCGGGATGACGTC 1252 29 100.0 32 ............................. CCTCCCCCACGGTCCTCTGTGGGTTTGGGTTG 1313 29 100.0 32 ............................. CAGGGGTAGGCCGGGATGGTCTGCCGGACCAT 1374 29 100.0 32 ............................. ACGGCCAGGAACTGCCGGAGATCCACCCCTCC 1435 29 100.0 32 ............................. GTAGATCATCCGCGCGTGGTCAACGTACCGTT 1496 29 100.0 32 ............................. GGAGCCCTCGTCCTCGTTGAACGCGCTCTCCA 1557 29 100.0 32 ............................. ATGTCGGCCTGCTCGAACGACGCGGCCATGAT 1618 29 100.0 32 ............................. GAGCCGCGCCCGTCGGGGCGGCGGATGCGGCC 1679 29 96.6 32 ......................C...... TCTGACGAACGCCGGTGGGGAGCCGGTGGGGC 1740 29 96.6 32 ..T.......................... GAGCCGCGCCCGTCGGGGCGGCGGATGCGGCC 1801 29 100.0 31 ............................. CACGAAGTCTGGCGCGTGCACGCCACCAGCA 1861 29 96.6 32 ......................C...... TCTGACGAACGCCGGTGGGAAGCCGGTGGGGC 1922 29 96.6 32 ..T.......................... GCGGTCCCCTCCTTCCCCGCGCGGATGTTCGC 1983 29 100.0 32 ............................. GAAGCGGCGGCGCCGTCGGACACCGACCGCCA 2044 29 100.0 32 ............................. GCGACCGGGTCGACCATCGTTGAGCCCTCGTC 2105 29 100.0 32 ............................. CGCGTAGAGGCCGGCCTCACCCAGGAAGAGCT 2166 29 100.0 33 ............................. CCAGGCAGCGATCGCGGCGCCGCGATCGGCAGC 2228 28 89.7 0 .............T...-.........T. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.2 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CATTCGCATTCCGTTGACACCCATTCAGGAGG # Right flank : GGGTCGGACCATGACGGCGTAACCCTGAGGTGCTTCGCCGTGTCCGGCTGTCGTTGACCTGCTGCGATTTCCTAATGCCTCCCACGGATCATGTCTCCTTGAGCGCCTCGGAGATCCGGCGGCGGGCAGTTTCGTCCTGGCCCACGATGCACTTGGCGTAGATCCGCAGGAGGACGTCCACGCTGTGGCCGGCCCACTGGGCGACCTGGGGTGCGGGAACCCCGGCGTTGAGCCAGGTCGAGACGCAGGCGTGCCGGAGATCGTAGATCCGCCGGGCCAGAGGGGAGGCGACCTCCTGAGGGGTGAGGGCCTGCTCGCGCGCTGCCGCCCATGCTCGCCGGTAGGTGATGGCTGGCAGGTCCCCGCCCTTGACCCCGTAGAACAGCCGCCCGTCGGGATCGTTGCCGAACTCGGCGAGATGTGCGCGGAGAATCCTGGTCAGCTCCGGTGGGCACGGTACGGAGCGCGCTTGCCCATCGGCACGGTGCTTGAGGGAACGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26418-24070 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOOK01000069.1 Planobispora takensis strain NBRC 109077 sequence069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26417 29 79.3 32 .....TAT......T..A.A......... GTCGACGCGGTCGGCTGCCAGGTGGAGCAGGT 26356 29 96.6 32 ..........T.................. CGGTTTTCCGCGCAGGCCAGCCGGATGGCCGC 26295 29 100.0 32 ............................. GTCCGCTCCGAGGACTGGAAGCTCGGCCCCCG 26234 29 96.6 32 ...................A......... GACAGGACCCCGCCCTGCGCCATCGGCGTCAG 26173 29 96.6 32 ..................A.......... GCTGGTATCGGCCGCGGTCGGCCGTGGCCCCC 26112 29 96.6 32 ............T................ GGCGGCGGCCGAGCGGTGCGCGACTCCAAGGA 26051 29 100.0 32 ............................. GTTCCGGACGAGGTGTGGGAGGCGGCCGTGAG 25990 29 100.0 32 ............................. TTTAGTGACGATATCGACCAGACCTGAAACTG 25929 29 100.0 33 ............................. CTCCAGGAGTCGAGTGACAACGGCGTCGGCGAC 25867 29 100.0 32 ............................. GACCACAGACCGCTCCCGAGGGTCGTGGTCGA 25806 29 100.0 32 ............................. TTAGCCAGTTAGGCCGGTTAGATTCCGGCCCT 25745 29 100.0 32 ............................. GCCGCATGAGCAACAACAGGACCTTTGAAGTA 25684 29 100.0 32 ............................. CCGCCGAGCTCACGGCGACGGGCGGGGAGGTG 25623 29 100.0 32 ............................. GAGATCTGCCGGGAAAACGGCGTTGAGGCCGA 25562 29 100.0 32 ............................. CAGGCCGACTACGTCGAGCTCCACCGGGTGAT 25501 29 100.0 32 ............................. TCAGCGAACCGCTTGGTCTTGATCACGTGCTC 25440 29 100.0 32 ............................. CCCCATGTTCTCCTTGTCGGTCACATCACCCC 25379 29 100.0 32 ............................. AGTGCGTCGAACTCGTCGTCGGGCAGCATGAG 25318 29 100.0 32 ............................. CAGGGGCTGCCGTTGCAGTTCCTCGTCACCGC 25257 29 100.0 32 ............................. GCATCCAGGTTGATGTGTCCCAGATTGCAATT 25196 29 100.0 32 ............................. ACACCAGCCCCGAACCCCACACCACCGAGATC 25135 29 100.0 32 ............................. ATCGATGGCCGAACCGCGCGGGTCGAGGTGGA 25074 29 100.0 32 ............................. GCCCTCTCCGTGGCTGGCGGTTCTCCTTTTCC 25013 29 100.0 32 ............................. CTCTCGGACTGCGGTGGGTCGACTTGGATGAG 24952 29 100.0 32 ............................. GGGGTATCGCAGTAGCGGCAGGACAGGTTGCA 24891 29 100.0 32 ............................. ACGAACCTGCGCTCCAGAACTCGCGTTCCGGC 24830 29 96.6 32 ............................T CCACCGTGGCGAAAACCCTGCGGTTCCTACGG 24769 29 100.0 32 ............................. ACGACGACCACTGAGGAGCGCCCGCTCCCACA 24708 29 100.0 32 ............................. ACCCCGGGCGGGCTGAAGGTCACGGCCACCAC 24647 29 100.0 32 ............................. CTGGCCTCGCCGATGATGCGCAGTGCGGATGT 24586 29 100.0 32 ............................. CCAAGATACGAGCAATCCCTCCCCGGGGCGCC 24525 29 100.0 32 ............................. TGGTGTGCGGTGATGCCCAGGTGGTCCAGCCC 24464 29 100.0 32 ............................. TCGACCGACCACTAGCGGGTCCAGGAATCCGG 24403 29 100.0 32 ............................. TCATGGGCGATGTACGTGCGCCCGGATGTGCC 24342 29 100.0 32 ............................. ACGTGGGGCGTGTCCTTCAGGACGGTCATGGT 24281 29 100.0 32 ............................. ACGCTGCCGAGCTGCAGCGTCGGGTAGGTCTC 24220 29 96.6 32 .........C................... GTCTGCGCCCGTTCATCTCCCTGCCCCTGTTC 24159 29 96.6 32 ............................A GTCACCTCGGATAAGAGAGCGTCCTGGACGGG 24098 28 86.2 0 ........-..A..T...........T.. | A [24079] ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.5 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : TCGATTCGCATTCCGACTGGTAGCCAACCCCACAAGAGCCGTCAAGCGGGATGAGAAGCAACAGAACAGACGCGCCGAACAGGGAAAGCGGGATCAGCCACGTCGCGTTGTCCATCGCACTCCCGAAGCTCAGATCAACTGGATAATCCGCCAGGGGGAACGCAACGGTTTTGTCATCCCGGCCGGCAGAAACGGCCGTCCCGATGTTGCTCCCTCCCCCGCGTTTCGGATGCAGGGCAAGACCCACGTCAGAGAAGAGGCGCAGAAGTTAACCATCGACCACGTCCGCTATGACGGTCATCTCATTGTCACAGACTCCAATCTCTTTGCCTCCGCTGTACGAAACGGCATCGGCCGAGGCAAGGCCTACGGTTGCGGCCTACTGAGTCTCGCCCCCGCTAGGTGAATAAAGTCCCGCAGATTGAAAACTAAACAGATGAAATTTAGATGACCCTCCATTGCATGAAGGTGAAGCATGGTGCCCATTGACCGTCTTTGAC # Right flank : CCAGCTCGAACACACAGATCTTCAAGGCGGTCGTCCTCACCGCGTCTCGTCCTGAGTGGCATTTGCGTCGATGATCGCGCTGCGGCGGTCCGGCACCATCACCCGTGATCGCTTCGTTAAGGCAATAGAGAGCGCGTGATCGCTGCCTGGCGGGGAGGGTGATCAGTGGCACAGGGCGAGACAGTCGGATTCATCACGATCGTGTTTGCCGTCGGCTTCCTGTACGCAATCGTCGAGGTAATGCACCGCTTCAAACGGCCGTTGCGCTCAGCTGAGCCCACCGGGTTCGTCTTGGGCTGGCGCACCCAGGAGGGCACCGTCCACACCCGGACGGCTCCGGTTGGTGCCGATGACCTCGATCTGGAGTTGTGGGCGGCGCAGCTTTCCCTGGAGCCGAGCGTGGCCTCGGCCTGGGTCTCCCGGCACACTCCGGCGGGGATGGTCCGGCGTTGCTGGGTACAGGGCCAACTGCAGGAGCCGCCCATCTCCTGAGACGGAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //