Array 1 367750-369364 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASS01000055.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_51812 51812_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 367750 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 367811 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 367872 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 367933 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 367994 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 368055 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 368116 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 368177 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 368238 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 368299 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 368360 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 368421 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 368482 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 368543 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 368604 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 368665 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 368726 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 368787 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 368849 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 368910 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 368971 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 369032 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 369093 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 369154 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 369215 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 369276 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 369337 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 385497-386607 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASS01000055.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_51812 51812_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 385497 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 385558 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 385620 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 385681 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 385742 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 385803 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 385864 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 385925 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 385987 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 386090 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 386151 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 386212 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 386273 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 386334 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 386395 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 386456 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 386517 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 386578 29 96.6 0 A............................ | A [386604] ========== ====== ====== ====== ============================= ========================================================================== ================== 18 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //