Array 1 192879-194151 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNGQ01000002.1 Lactobacillus iners strain UMB0030 .16933_8_35.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 192879 29 100.0 32 ............................. AGAAAAGTATGGGCAAGATCCGTGGAATGAAG 192940 29 96.6 33 ............................C ACTGTTTGAACAGTAACCATGTTGCCATCAGTA 193002 29 96.6 33 ............................C ACCACACCTGATCAAATAACCACCCGACAAAAG 193064 29 96.6 32 ............................C ACGGGCTAGAAAATCTAAAACAAGCATGTTTG 193125 29 96.6 33 ............................C TATGGGAAGTTTTTACTTTTCTATGTCAATGCG 193187 29 96.6 32 ............................C AGCGTTATTATATAAGTATAAAGAGAAAAGGA 193248 29 100.0 32 ............................. GGAAAACAACAATGCGGACTGGAAAGGCAGAT 193309 29 100.0 33 ............................. CAATGCTTACTTCTCGAATTCAATTAACACCAC 193371 29 96.6 32 ............................C ACGGAAACCGCAAAAATGATTGCAAGCTGGAG 193432 29 100.0 32 ............................. CACAACAGTAACTTCATCACCTAAATTTACTC 193493 29 100.0 32 ............................. AAAAGGGGTGATTCTGATGAGTTACACATTTA 193554 29 100.0 33 ............................. TCAGGGTCAATAAAGCTACTAGACACAGAGTTA 193616 29 96.6 32 ............................C GATCAATTTTTGGAAAGCGGGGAGTATATAGG 193677 29 100.0 32 ............................. ACTTGCGTCGGTATGTAGCCCGTTCCAGTTAT 193738 29 100.0 32 ............................. ACGCCGTTGAGATGATAGAAAGCGACTTCAAT 193799 29 100.0 32 ............................. GTTGCGAAGTCAGTATTAGATGCTTTAAATCC 193860 29 100.0 32 ............................. GACCAACTAAAAGATTTAGCAGGCATGGTAAA 193921 29 100.0 33 ............................. CAACGCTTACTTCAAAGTAATAAAGTCACTTTA 193983 29 82.8 109 .....................AC...TTA AAAACACTTCCAAATTTTTATTTACAAAATTTAGGCAATATATCATAATATGTTTAACTTAGGAGTAAGCATGTTATTTTTAGTTTTGGCTTGCTTTTTTCTTAATATT T [194003] 194122 29 69.0 0 ...C..T...T.......T..A.A..AAA | T [194139] ========== ====== ====== ====== ============================= ============================================================================================================= ================== 20 29 96.4 36 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAAATGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTGTGCACGTTTATTGGAGATAAAGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATCAATGAGGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATACGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTATAAGTTGGATACAGTATTAAGTGAATACGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT # Right flank : AGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAACTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCAATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAACATAGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCGAAATAAGTGCTTTTTTGTGATTTGAAATTTTTTATTTAGAATTTTTAGTTAATTTATTTTTGATAGATAATATGATGATAGGCAAAATTGAAATAGCAATGATAGCAATGATCAGCAAGGAAAAATGATGCTGTACAGCAGGAATATTACCGAATAAAAAGCCACAGATTGAAAATA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.33, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //