Array 1 300792-298111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHHY010000001.1 Chitinivorax tropicus strain DSM 27165 Ga0415264_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 300791 37 100.0 34 ..................................... AAGGATGCGGCCGGGGCGGCGATTATGTCGCTTC 300720 37 100.0 34 ..................................... AAGGCATCGAAAATGCGGGGCGCGTTGCTAACCA 300649 37 100.0 34 ..................................... CATGTACGCCCTAATTACGGCTTCTGCTGCCTCC 300578 37 100.0 34 ..................................... ATGTTGCTACCGTCAAATATGGCACCAGTCACGA 300507 37 100.0 33 ..................................... AAGTTGGCAGTCATCAAGCATGTCGATTTTCTC 300437 37 100.0 34 ..................................... CTTTTCATCATCGTCTTTGGCCTGGCGAAGTTGC 300366 37 100.0 33 ..................................... TTGCGTTCGATGAAGCGGTCAGTTGCGCCAGGT 300296 37 100.0 35 ..................................... TTCTCGCCGGTCTTCTTGTCCTTCCATGCGTCGGT 300224 37 100.0 34 ..................................... TTTTCGAACCCACTGATAGTTACTGTCAGCATGA 300153 37 100.0 33 ..................................... CTCGTTACAGCAACTACAGCTGATGCGACCGAT 300083 37 100.0 34 ..................................... AAATTTATCCTGCTGCTTAGTCCATTCAGGCGCC 300012 37 100.0 34 ..................................... TTGATCGTAAATCAGAAAATACATATGTGATTGC 299941 37 100.0 34 ..................................... CAAGCCAGCTCGATGTCGCTTGCCGGGTATTGCG 299870 37 100.0 35 ..................................... AACCGCCGATTTCATGTAACGGGCCAGCCTTTCGC 299798 37 100.0 38 ..................................... GCGCAAGTCGTGGTATTGGCCAGGCTATCGCATTGGAG 299723 37 100.0 34 ..................................... TCGGCGATCTGCTGAGCGAAGTTGTCAGCGTCCT 299652 37 100.0 37 ..................................... CAGTTCATGCCGGGGACGGTGGATGACGTAAGTAAAC 299578 37 100.0 34 ..................................... TCTGAGAAGAAGTCGAAATCGACCGAATCACGGT 299507 37 100.0 35 ..................................... CGGGCCGTGCCTTGCGCCAACGCAGCCGCCTTGAC 299435 37 100.0 36 ..................................... GTTTGCATCCCAACCCAAAAAATAATCGGATCCCCA 299362 37 100.0 35 ..................................... ATCAATAAAGCCCGCGGCGCATGGGCAACCCTACT 299290 37 100.0 34 ..................................... TCTGGCCATAGCTCGACCTCCTCTTGATAATCTT 299219 37 100.0 34 ..................................... TTGTCGAGCCTGGCCGCGTCGGCAATCTTGGCTT 299148 37 100.0 36 ..................................... GCGATGCAAGCATTTGTGCGGCAACAAGGCGGCGGG 299075 37 100.0 35 ..................................... ATGAAGTGGTGCGCGCCGCTGGCGAGCAGCGCGAG 299003 37 100.0 34 ..................................... ATCTCGGCCCTTACATCAGGTGAAAAAGCCTTTG 298932 37 100.0 34 ..................................... TGCTTTGCGATACCTAAATACTTGGCCAGACCGT 298861 37 100.0 34 ..................................... GCGCCTTGTTGATGCGCTTACCGAGGGAGACACC 298790 37 100.0 36 ..................................... CGTTGCAATTAACCACGAATTGTTACGCCAAGTCGC 298717 37 100.0 35 ..................................... AAAAACAACTGGTTGTTTTTACCCCGAATCTGAAA 298645 37 100.0 34 ..................................... GGTTTGGACAAAGATCGTGGCATGGAACCGTTTT 298574 37 100.0 35 ..................................... AGAGTGTCTTCGTGTGATTACACTTCGTTTGCCAG 298502 37 100.0 34 ..................................... AACTAGGTTGTTACCAGCCGAGTCGGTTTCAGGC 298431 37 100.0 34 ..................................... ATCTTGACGACAGAGGCTTGGCGCAGGCTGCTTT 298360 37 100.0 34 ..................................... ATGCTTTAGTGGGCTGGAGCAAATGATGGAATCA 298289 37 100.0 34 ..................................... AGGTCTTTTTCTGCATCCGCAAGCTTATATCCAT 298218 37 100.0 34 ..................................... AGCTGAATTTCCATCGAGGTGTAGACCTTCTGCC 298147 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 38 37 100.0 34 GCATCGCCCAGCCTAACCGCTGGGCGCGGATTGAAAC # Left flank : CCGAAGGCTACCTACCCTATCTGGCCCGCTGACATGCTCATCATCGTCTGTTACGACGTCTCCACCGAAACCAGCGCCGGACGCCGCCGCCTGCGCCGCGTCGCCAAAGCCTGCGAGGCCGTCGGCCAGCGCGTGCAGAAATCCGTATTCGAATGCCGCGTCAGCCTCATGCAATACGAAGAACTGGAACGCAAACTGCTCCGCGAAATCGACCAGACCCAAGACCGGCTGCGGCTTTACCGCCTGCACGAGCCTATTGACCTGAATGTCAAAGAATATGGACAATTCAAAGCACTGGATTTCGACGGCCCGCTGGTGGTGTAGCGCGAACCCCCAGCAACCGACAAAACCCAGCCCTGTTCGCGTTTTTCCAACTGATTGAATAAAATGGGAAAAATTATGACCACCACCCCAGGCGCCCACCCGCTGCTGCCACATGGCAACAGGTTCGCGCAGGTGATCAGAAAAAGCCTGTTTCATCAAAAAGATGGAAAAACGGG # Right flank : TGGCTGAGGTGACGGATCGCAAAGGTATCTGCCAGCTACGACAGCGAAGTAAGTCTGTCGCCGTTGATAGGCCAAGGCAAGGGTTGCTATCCCTTGTTGGTCTTCATAGTGTTTTGCTGATCAATACCTTTGGGTTGTTGCCGATGCCGTTCCAGGCCATTGGTGTTTCCAGAAGCTCGATCTTGCTGATTGCTTTGTTGCCGGGTACGTTGATCCCCCACACCTGGAAACTGTTGCCATCATTTGGGTCCAACTTGCTCGCAGGGGTGTTGCCCATGGGTGAAAACCAACTGCGCATACCGCCCTGCAACAGAATATGCTGCATGCTGCCATCTTTGAAGGTGACGCGAACAGTGAAATCACATCCGCTTGCATGGCAGTACCATGGGTATTTCCCGGTATTCGGGATGATTTCCGCCAGTTGGGAGGCTACGGTCGGGTCAACGTTGCGACGCAGGTTGCCCTCATACGAGAGGACGGGGTAAATCTGCGATGCATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCAGCCTAACCGCTGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 1 12816-11213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHHY010000011.1 Chitinivorax tropicus strain DSM 27165 Ga0415264_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 12815 37 100.0 35 ..................................... CTCGTTGCTCATCACAACGATTGATGTATCAGGCT 12743 37 100.0 33 ..................................... ACGCTTGCTGGAAACCATCCCTAATAGTGGTGG 12673 37 100.0 36 ..................................... ATTTTGGTTTCTTTGAACATGCCAAGCCTCGCGTCC 12600 37 100.0 35 ..................................... CTAGCCCTTGGCTTTCTCCCATGTTTGAATTTACC 12528 37 100.0 33 ..................................... AATCTACTTCGCAACAACAGTCGCGCAGAGCGC 12458 37 100.0 35 ..................................... AAACGCGGGCAAAAACACTTGGCGGGCTTGCTCGC 12386 37 100.0 34 ..................................... AAGTTCATGATGTCCCAAGCAGCGCGGCGTCAGA 12315 37 100.0 35 ..................................... AGTGAGAATGAGCCCACATTAGCTGATAACAACCC 12243 37 100.0 33 ..................................... ATCTGATGTCACGGTGCATAGCGAGATGGCAAC 12173 37 100.0 33 ..................................... TTGTATCCTTCGTCGGATGGTGATGTCGGCTTT 12103 37 100.0 34 ..................................... TATGCCGATCCCGAGGATCAACCAGAGGTATGCA 12032 37 100.0 34 ..................................... TTATCGTCACTCTTGGCCTTGCTGGCCTCAATCA 11961 37 100.0 35 ..................................... ATGTTGGCACTCCGTCCCATGTGCGACCGTCGAGC 11889 37 100.0 34 ..................................... CGTTATTTGTCTATAAAGCATGAGCGGTACGACT 11818 37 100.0 35 ..................................... AACTTGAAGACGGCAGGTGCGGTAACGGCCTCTGC 11746 37 100.0 34 ..................................... AGGCAAGCTACCTTGGAGCCTCGGGGCGGGGTTT 11675 37 100.0 34 ..................................... ATTTCGCGCCAATTTGTTAAGTGCCGCGTACCGG 11604 37 100.0 34 ..................................... CAACAGTTCGGCCTCCGCTTGCGATTTTGCCTCT 11533 37 100.0 34 ..................................... TTGGTTCGGTTGGTGTTGGTCTTGGTGTTGGTGT 11462 37 100.0 34 ..................................... GCCGTGCTATCTGCACTGCACTACTACGTTGGCG 11391 37 100.0 34 ..................................... TGCTCGCCAGTATGGTCGATCGACAACACGATGA 11320 37 100.0 34 ..................................... AAGTTGAGCCGTGTCGGGGTATCGCTCGACAAGG 11249 37 89.2 0 ...........................TT......TA | ========== ====== ====== ====== ===================================== ==================================== ================== 23 37 99.5 34 GCATCGCCCAGCCTAACCGCTGGGCGCGGATTGAAAC # Left flank : AGTCGAGAGAGACCCCTGGCTCGGCCCGGATGTACAGCTGACGGCGGAGCACCCGGATGGGTGAAACTGACCCCGCCCGCAAAAAAAACAGCCAGACTGACATGCATTGCAGAGCGAGCCCTGGCCCCCGCTGGCGGCGCCACCTGGCCAGGTGCGCCCGCCACACGAATACCCGGCGTAGAACCACACAACAAACTGCACCGCGAAATCGACCAGACCCCAAACCGGCTGCGGTGTCACTGCCTGCACGAACCTATTGACCCGACTATCAAAGAATAGGGACAATTCAAAGCACTGGATTTCGACGGCCTGCTGGTGGTGTAGCGCGAACCCCCAGCAACCGACAAAACCCAGCCCTGTTCGCGTTTTTCCAACCAATTGATTGAAATGGGAAAAATCATGGCCACTACCCCAGGTGCCCACCCGCTGCTGCCACATGGCAACAGGTTCGCGCAGGCGGTCAGAAAAAGCCTGTTTCATCAAAAAGATGGAAAAACGGG # Right flank : AGCCGCTTCTGCGGCTTTTCCTTTATCTGCTTGCAGATTTGCAGATGTATTTCCGGATGTCATATTCTTGCCGCCCATCGTGATTTCATCTTGATGCGGAGGACGTTCATGCTGCCAGTTATTGTCTTGGGTGATGCCACTGACCACGGTGGGGTGGTGCTGTCTGCCTCGCCTGGTAGTGAGACTGAAGGCAGGCCGATGGCCCGGGTGGGGGATCTGGTCGGCTGCCCGACCTGTATGGGGGTGTATGCCATTGCCGAGGGGGATACGACTTGGTTGGATGAAGGCCAGCCGGTGGCTTACCACGGCTGCAAGACCACTTGTGGGGCATCGCTGATCAGCTCGCAGACCTTGATCGGGCGCCGTGCCAGTGGGCCAAGCAGGGCGGCGGCGGGGGTGCTGGGTGGTGCGGGCCGGGGGACGATGGTGAGCTATCAACCCTGGGCGGGGGCTGCGCTGGTGGATGATACGGCGCAGTCAAGCACTGCCCAGCCTGCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCGCCCAGCCTAACCGCTGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 33306-36082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHHY010000009.1 Chitinivorax tropicus strain DSM 27165 Ga0415264_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33306 28 100.0 32 ............................ GCGTTGGATCTCTGCTACGTTGATCAGTGCCT 33366 28 100.0 32 ............................ TTACAAACAATGGGTTGAGCAAGGCTGGTTGA 33426 28 100.0 32 ............................ CTTGCCCCGGCGAGCCTCCCGGCGGCGAGGGC 33486 28 100.0 32 ............................ CCCCCCCTGCCCCTCTGAGCTGGAGCGTGATC 33546 28 100.0 32 ............................ ATTGACAGAGTAAGGATCCGGAGACTGCGCAT 33606 28 100.0 32 ............................ TGATAGACATCAGCTCCGCGAAATATCCAGCG 33666 28 100.0 32 ............................ TTTGGCCGCGCCCGCTCCTTGCGTCGCAGACG 33726 28 100.0 32 ............................ ATCTCTACAACAAGAGATAGATCGGATAGCAA 33786 28 100.0 32 ............................ TCTTTTTCGGCAACCACCTGTGTTTTGCTCTC 33846 28 100.0 32 ............................ AGGCTCGTGTTTATTAAAGAAGAGAGAATCCT 33906 28 100.0 32 ............................ GGTTGGCGCTGTGCAAACCCTGCACCCGTCTG 33966 28 100.0 32 ............................ TGGTCACCGCAGCGACGGTCGGCAAGGTGGGT 34026 28 100.0 32 ............................ AAAGGATGCATTTAAGGATGGTGATAAGTCGA 34086 28 100.0 32 ............................ ATCAGGACACTGCTTGTCCAAAGGCAAAGACT 34146 28 100.0 32 ............................ AAACGACCAGAGCCTGACGCGCCGCTCGGCAC 34206 28 100.0 32 ............................ TTGCACTCCATCAAAGCCAAATCCGGCCAAGT 34266 28 100.0 32 ............................ ACGCTGATACTTGTACTCAAATGGGTTTCCAG 34326 28 100.0 32 ............................ AGTCGCAACGCGACCAAGGTAATGCCGCATGG 34386 28 100.0 32 ............................ AACGCACTCGGTGAAATCTTGCCGAGCGATCA 34446 28 100.0 32 ............................ ACATCGCGCACTCGTCGAGTACGATCAAACCA 34506 28 100.0 32 ............................ ACGATCGAAACCAACATTCCCACCGGCAAGGA 34566 28 100.0 32 ............................ TGGCGATTTGTACCAAATCACCAGGTGTAATC 34626 28 100.0 32 ............................ AAGCCGCGTGCCTGGCAGAACACGCACAACGG 34686 28 100.0 32 ............................ AGATCAGCCACGGCATGCACCACGGCCGCATT 34746 28 100.0 32 ............................ GCGCTATCGGACGGCTGACCTCGGGCGAAGAG 34806 28 100.0 32 ............................ TTGTTCATCCCGACACCCGTGTCTGAGATGGT 34866 28 100.0 32 ............................ CAGAAATCAGGGATGCTTGGAATCGCATTCTT 34926 28 100.0 32 ............................ AGACCCCGAGGCGCGGTTGGTAGCGATGCGCT 34986 28 100.0 32 ............................ ACTACGCCACCCCTACTTTGCGCTCGGTCTTG 35046 28 100.0 32 ............................ AAGCATAGTTATCATTGTCGTAACGCTGCCTA 35106 28 100.0 32 ............................ TGAAAGCCGAGGCCGGCGGCGTGCGCCAGGTC 35166 28 100.0 32 ............................ AGGATGCGTTCGACCTGGGCGGGATAAAGGGT 35226 28 100.0 32 ............................ GCCTAGTTGCCGAACTTTACGAAGCCCTTGGA 35286 28 100.0 32 ............................ TACTGGCATGGTCAGGGTGTCGTTGGCGGAAA 35346 28 100.0 32 ............................ AGTGATGTGATCCAGCGGACGCTGGCGCAAAC 35406 28 100.0 32 ............................ GAAACCATCTCCGTCCAGCGCGACATCTACGT 35466 28 100.0 32 ............................ AGATCAGCATCACTGACGCGCTCACCCGCCAC 35526 28 100.0 32 ............................ ACCAACCTGATTAGCACCACATTTAGGCGGAT 35586 28 100.0 32 ............................ TGAGCTGCTTCGGTGGTCTGAAACACACTAAA 35646 28 100.0 32 ............................ AACAGCGAGGCTGTGACCGAGCGCTCCGTGGA 35706 28 96.4 32 ......................G..... ATCAGCAGCGAGCTCGGGCGCGGCACATCCGT 35766 28 96.4 32 ......................G..... GGACTGTTGCGCGATGGACTCAAAGCCCCGGA 35826 28 100.0 32 ............................ GCTCTGGCGAGCCAACAGGCTTAAACCCTTTC 35886 28 100.0 32 ............................ TTCCATTCTTGTCAATGTTTCTTTGATAATTT 35946 28 100.0 32 ............................ GCCATGTCGCCACTGGTAGGATTCGCCTCGTC 36006 28 100.0 21 ............................ TAGCCGCCACATAAGCAGACC Deletion [36055] 36055 28 89.3 0 ......................G..GG. | ========== ====== ====== ====== ============================ ================================ ================== 47 28 99.6 32 GTTTTCCGCCGAGCAGGCGGTTAAGAAG # Left flank : GGAAAAACGCCTATATGCCCACCTATCCAAGGCCTTAGGGTTTGAATTCAGCCGGGAAGAAGGCAAGCGATCTCGCGAAACCCCTGCAGACCGCGTCAACAGTTTTCTGGATCACGGCAACTACCTCGCCTACGGCTTGGCCGCAGTCGCGCTGAATGGGCTTGGCATCGGGTTTGCTTTCCCACTCCTGCACGGTAAAACCAGACGTGGCGCATTGGTATTTGATATTGCAGACCTGATCAAGGACGCACACGTCATGCCCCTGGCATTCATCATGGGAAACGACCCGAAAGTATCCGACAACCAATTCCGGGTGGAACTGATCGACCGCTTCCACAGACACGATGTATTGGACTATCTGTTTGAGTTTGCAAAAAATCTCCCATCAAAATATGAATATATTTCAGACACTTAGAAAACCCTTAATCAAAGGAAGGCTCACACACGCAAAAACACCACAAGCAATTGTTTTCCATGGTAAAAATGGAATCAAACAATCA # Right flank : GAGTCGGGAGGCACCAGGCCTGTTGTCCGACGAACCTTGCGGCGTGGCCCCCATATCAGGCACGCAGCGGGTGGGTGGCGCTAGGGCCTGACAGGGCGGTTCTGGCATGGTCAATCAACCGGCGGCTCAGTCTTTCCAGCATCGGTGTTTCCCGTTGCCAGCGATGCCAGTACAGGGTGATCAGGGTCGGGCGGTCGGGGGCCAGATTGATCAGCCGCCCGGCTTCAATGTGTGGCTGGGCTTGTACGTCCACCACCATCCCCCAGCCGATTCCGGCCAAAATGCCACCGATGAAGCCGACGTTGGTCGGAAAACCGTGTTGTGGGTATTCATTGGCCTGCAGGCCAAAATGACGAGCCAGGAAATCGGACTGTAGCGTGTCCTTGCGGTTGAAGTTCATCACCGGTGCCCGGCGCAGGGTATCGGCAGTCATACCGTCAGAGAAATACCGGGCGACAAAGCCGGGGGCGGCCACACTCCAGTAACGCATGCACCCCAAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCGCCGAGCAGGCGGTTAAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //