Array 1 16028-16678 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTP01000005.1 Prevotella pallens strain NCTC13043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 16028 46 100.0 29 .............................................. AAAGCGAAGTAATTCCTTTACACCTAACA 16103 46 100.0 30 .............................................. GCCTATTCAAAGGATGCGAAAAAAGTTTAT 16179 46 100.0 30 .............................................. GCAACGTCAATGCGGTAATATTAAGCGATA 16255 46 100.0 30 .............................................. ATGCAAGTAAGGGCAGTGATGAGAAATACA 16331 46 100.0 29 .............................................. ACATACCCCAACACGTAATCTGTTATCTC 16406 46 100.0 30 .............................................. GGCTGCACTTGTGTAGCTTGCATTGGTGCA 16482 46 100.0 30 .............................................. ACACTTTGGGAAGTATCTATTTTCAAGAGG 16558 46 97.8 29 ...................A.......................... AGTCATTCGGAATTTCCTCCATTATTTCT 16633 46 97.8 0 ...........C.................................. | ========== ====== ====== ====== ============================================== ============================== ================== 9 46 99.5 30 GTTGTTATTGAACCACAAAGATACAATTTTCTAAGCAAATCACAAC # Left flank : TTAGTGAAAGATGGCTTTACTATGTTTCAATTCTCTATTTATGTACGCCATTGTGCGAGTATGGAGAATGCCGAAGTTCACATAAAACGTATTCGAGCTCATCTTCCTCGTTATGGAGAAGTAGGTATATTGTATATTACCGACAAGCAATTTGCCAATATTCAATTATTTTCTGGTGAAAAACCTAAGCCACCCAATGCACCCGGACAACAATTAGAACTGTTCTAAGTTAGTTTATATAGAAGTAAAAAGAGGGTGTGTCAAAACTCGTTTTCAGCTAAAGACAGCTATCATTTTGTAAAGAATAACCGTTACCAAAGAGTTAATAACTCTATGATAACGGTTACTTTAATATTTATGAGGGAGTGAAACTGTTAATATGAAAGGAAGCTTTTCTGAATTCTTAGTTTTGACACACCCCCTTTCCCTTTGTGGCTTCATTTTTATTTTCTTTCAATAACTCTATATATCTCTGAATATCAAGTATATATTGATAATCA # Right flank : CTGTATTGTGTTAAACAAAATGAATGACAATGTTGGAAATCAAAGAGCGAACAGCAAAAAGTACATTGCGTATATATAAGAATAACATATTTTTTTGGAGTAGGAGAGTAGCTTACACTGTAGGAACCCCCAATTATGAGGTCTGAAACTGGTTTAAATGTTTTAAATGTAATTTCACCAATCTCGTTAATAATCGTATTTGGACGATAGGCTTCGGCATATTTACACTCATATAAGGTAACATTTTCATTCCAAAGAAAACGATATACACGAGCGTTAAAGGTTTTTCCGATACTGCTACCGAATATATTTTTTCTAAAAAAATAACAGCTTGGGAATAATGTAAAACTACTTTTCTAACATTAATAGCAATTCTTCTTTTGAACTGTTATAAGGCGGTTTCCATACTTTTTCTTCTTGTTCTATTATTTCATCGTATTCTTCGTTTGATAATTGTTTTTCCATTGCAATCTGAAGAATATATCTTATATGTGCTAATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTATTGAACCACAAAGATACAATTTTCTAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 247371-247698 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTP01000001.1 Prevotella pallens strain NCTC13043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 247371 37 100.0 36 ..................................... TCATTCCTAACTCATATAGTGAAGGTTGACGATTTA 247444 37 100.0 38 ..................................... TTAGCGAGTTTCAAACCCGCTTTCATATCATTAACACG 247519 37 100.0 35 ..................................... GTAAATATTATTTGCGAACTCTTTCGCCTTTGATA 247591 37 100.0 34 ..................................... TTTGCGACCGCAAATCTATACTCACTGCGCAAGA 247662 37 89.2 0 .........C.C......................T.T | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.8 36 ATTATTAAGTATATTCCATTACAACAAGGATTAAGAC # Left flank : AGAACACAAAAGATGTTTTTTGTACAGCAATCAATATGGCAAATTATAGAAGTGTTATTGGCAATGGTATAGAGGACAAGTTGTTTTTCTTTGTCTCTTTAAAAGATTACAACAAAGCAGGTATTTCTTTTTATGATGATGAAGTATGCAAGGGAACTATTGAAGGAATAGGAGGAAGGGCAAATGAAAACGAAGTTGAGTTGATTTCATTGCGGTTGATTTCTAAAGAACCTAAAGAAGGGATTAAAAGATTATTTAATGCCATAAGGAATAAACTAAAGAAAGATTCAACAATAGGCGTTGGTGTTCAAAGTGGCTCATCGAAATATCCTAAATTCTTTTATCAGAAGTCGCTGACAGATAATAAGGTCTTTAAGTTTGACTTCAATAATGACAAATTGCCTGTTATCAAGCCATTATAGGAGATGTTAAAGCCAAATCTATAGAGAATTTGGAAAGAAAAGCGTTATGAGTTACTATCAGTTATTGGAGAAAATATA # Right flank : TTTTCGGTGCTTAATGATTTAAGCTTTTTATTAAATATGGCATACAATAAATGCTTAAGGCACAATATATTCTGTTATTTTTAGTTTTATGTTAAGACAATTGGTTTAGAGCTTTGTTGGCACCATTTAGAAACTGGGCTGGAAGAAGGTTTAATGTTAAACTATTAATGCTGAATAGCTAATTACGAATGGGCGTACGGCTACGATAAACAGATTATTTATATTTTAAAATAGTATTAAATTGATTATGAACGATAACGATGTTTCCTCTTATTATAAGGAGGCTTTAGCTACAGATAGTTTTACGGTACACAATAACTTTCTGAATATGTTATTGAAAGATGGTTCTGCATTAGGTATGGAACGCCATTATTGCTATTTTAAAGATTCGAAGAATGCTGATTTGAAACGAATTTTAGGGAACGGATTTCTAAAGCGTGGAAAAGAAGGTGTGCTCTTTTTAGAAGAAAAACTAAAAACCGAAACAGATGCTCTGGCAA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATTAAGTATATTCCATTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1311649-1312015 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTP01000001.1 Prevotella pallens strain NCTC13043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1311649 37 100.0 29 ..................................... TTTTTTATTCGAACAGTGTCTTAACTAGA 1311715 37 100.0 29 ..................................... AATTTCATCGTTGTTTTTCCAATGCTAAA 1311781 37 97.3 29 ..........A.......................... AAATATCTTTGATAGAGCATTCGCCCCAT 1311847 37 91.9 29 G..........................C.T....... AAGAATGTATTTTGAATAGGATCTGGTTC 1311913 37 94.6 29 ...........................C.T....... ACACTCATTTTCTGTTCTCTAATTGTGAA 1311979 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 97.3 29 AGTTGTATCTGCCTTCTGTTTGAAAGGTAAAAACAAC # Left flank : CAAAGCAAAGTTTAATAACGATGTAAAACTCCTTACTGCCGTACGAAATGCCTTTTCTCACAACCAATATCCAATGTACGATGAAAATCTCTTCGTAAATATTGAGCGATTCAGCCTTTCTTCTTCTAAAATTTTAGAAAGTAAAGGACTCAGTATTGCAGTAAAACTGAAAGAGGAAGTTAGTAAAATAATAAAAAAAATACAGGAAGAGGAAGATGGCAAAAAAGAAAAGGAAACATAAAAACAAGATAATGGATTGTTCGCTAATATAAAAAGAGAACAATGTTAATCATTTTGAATATAGCAAACACATCTATGTGCTGTTACTTATTGTTAATAACAAAGAAGATGATATGATAGAAATTCATCAGAGTCTCTCAATACGAATAAGAAACAATATAAATTTTAAAAAACGAGATTTATGTTTAAATAGTGAGAATACATTAGAAGAATATTAGAAAAGAAAGAAAATAGATAATAATCAGATAGTTAGGTTAGGT # Right flank : CTTATAAACAAGTAAGTGTACAGAATGTGAAGGGTAAAAATAAATTGGGAAACATGCCTTTTAAGGAGAGAAAAAGGCATGAAAAGTGGAAATATTTTTCACAAGCAAAACTATCGGATAATTATTTTGGTGTCAGCGTATTGTAAAATCTATTTTCTTCGTGCTAAAGCATAAAATACACATAACACAAAACCGCCTCTTTTGAATTTCAAAAGAGGCGGTTTTGTGTCGTAAAATAGGCATTCTTGCGCTACTATTTAGACGCTTTTAAATGCAAAAAATACCATTGAAAGCTACATGTACATTCATTAAAAATATAAGACCCTTTTTAATTATTTTGAAAGCATGCCGATATGCCGTATTGTTTTATTATTTCATCGTACATCTTTGTCTGTACAGAAACCATAAGGGACTTATCGGTATTGGAATATTAGGACAAAGATGCCGTTAATTCAGCACGCCAATGTTTATTCCACGCATCTTCTATAGCTTTTGAATAG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGTATCTGCCTTCTGTTTGAAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //