Array 1 72783-73410 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEF010000021.1 Pseudoalteromonas sp. MMG012 assembly_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 72783 28 100.0 32 ............................ GCTATTCATTACCGCACTTATAGTCTTACTTG 72843 28 100.0 32 ............................ ATGAACAGGATTGGTCTGGTTGGGCCGCTAAG 72903 28 100.0 32 ............................ TGATCAAACTTTGCTTTAAGCACCGACTTTGC 72963 28 100.0 32 ............................ ATACTTCGCTGGCGGCTTCGGCTTCCATGGCA 73023 28 100.0 32 ............................ GTCATCGCCAAGGGCTATAATGCACCCTTGCC 73083 28 100.0 32 ............................ TTCAACTAGGTGATCACTCAACGCCCCTATTA 73143 28 100.0 32 ............................ TATCTCGCCATTTGAGATCTAATTTTGTTACT 73203 28 100.0 32 ............................ CAACTGCCAAAGGCTGCGGTGCTGCCCTGGTA 73263 28 100.0 32 ............................ ACAGGTACCAGAACCCATACAAAAATCTAAAA 73323 28 100.0 32 ............................ TCTACATCATTACCGTCTAACGCAACTGCGAT 73383 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGACAGGGGTTAATTTTATTGTCTTCCTGTACTAGGTTCAGGATCTAGTGAGGGTGAATAGTAACAGCTGACAGGAATTAATTTTATTGTCTTCTTGAACTTGATTCAGGATCTAGTGAGGGTAAATAGTAACAGCTGACAGGGGTTAATTTTATTGTCTTCCTGAACTTGATTCAGGATCTGGTGAGGGTGAATAGTAGCAGCTGACAGGGGTTAATTTTATTGTCTTCCTGAACTTGATTCAGGATCTGGTGAAAACGGAAAATACAATAACAGGCATATGACATGTCTGAATTCAGTAATGTGAGGTTAATTATTAGCAGGTGCGGATATTGTATGTCATTATCGAGTCTAACATGATGAAAATACCCTATTATTTTGGCTCTTTAAAAAGTAACTATAAAACAATCAGTTACAGTTAGTCGTTTTTTATATGGTTAAAATGGTATTTTGACCGTAACGAATTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : ATAAGGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 77372-76933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEF010000012.1 Pseudoalteromonas sp. MMG012 assembly_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 77371 35 100.0 33 ................................... TTGTGCATTCATAAGAATGTCTCCAAAATAAAA 77303 35 100.0 32 ................................... TATATGCCATAGATTATTTTCTCTCGAAAAAG 77236 35 100.0 33 ................................... CATAATATTCTTCCTTTTTTGTTGTACCTAATA 77168 35 100.0 33 ................................... TAATTCTCTTATATAAAGGTAAGTAAGGTAAAT 77100 35 100.0 33 ................................... AATTAAGTCAGGTATGCTGGCAACGCTGTGCAT 77032 35 100.0 31 ................................... TGTTTAAAGCCCTTCTTTAAAGTGTATAAGT 76966 34 91.4 0 .............-............A.....G.. | ========== ====== ====== ====== =================================== ================================= ================== 7 35 98.8 33 GTATGAGTGACCCCGACTTTAGAGGGGATTGATAC # Left flank : CGATAAAGCGCATGATCTAAGTGGCTTAGTTGGTCAAATACAGTACCAAACCACATCGCAATCACTATTATGGCTACAAATTGGCAGCGCATTGCAAATAGGTAAAAAAGCCAATTTTGGTCAGGGCAATTACTCCCTAGAATATGCCTTAATGTCGGCTCATGATGACTCAGTACAGTAAGTTATGTAAATAGGTTAATGCCCGAAAATAAACGCTTTAATCTATTTTGACCACATACTGCTTTTTTACTTAGGTTACTTTGACTGAAAAGGTTATAGCCTTTTAATTTAATTAGCTTTTTTCAAAAAATATTATTTAATCTACACTATAAAATCAACACTTTGTCAGTAGCCTAGACCGCAGATGTTTGAAAAATTTAAACTTTTTCCTTTCCAATACTTAAAAATGTCAGTAATAAACAGATTTTAGGTACAAGCTTTTGGAGAGCGTCATTTTTACCCCTTCTAGGCCTTGTATGGCGCGGCCTCGATCAGCTATA # Right flank : TGGCTCTCCTAAGAGCTTTGTATTGTGGTTCAATAATTCCGGACACTATTTTAGGTGGTATCATTACCACTCAATCAGAGGTGTCCGATGGCAAGAAAACGCAGAACATTTAGTAAAGAATTCAAACTTGAAGCCGCTTGTTTAGTTTTAGACCAAGGCTATTCACTTCAAGAAGCATGTCGTTCATTGGATGTTGGAGAAACGGCTTTAAGGCGCTGGGTTCAACAACTTGAACTTGAGCGAAATGGTGAAACACCTAATGCCAAAGCTTTGAAGAAGGATATTAAACTATTTAACTCCTAATGATATGATTAAAAACCATGTTGCACTGACCACTTGATATCACCACTCCTTACTTTTCGCGAAAAATCGCTTCATACCACTGAGAGTTTCTTACTTAAGACTCGATGAAAAAACTAATCAATTGAATTTAAAGGAAATTTTAAATTAGAATAATTATAGACAAAAAAGATATATAAATTAGGTAAGATTATTTTGCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGAGTGACCCCGACTTTAGAGGGGATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 92292-92798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEF010000012.1 Pseudoalteromonas sp. MMG012 assembly_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 92292 35 100.0 32 ................................... CACTTGAGTTGAGTTGAACGGCGCACAGTAAA 92359 35 100.0 32 ................................... ACATTACTTATTTTCATAGTAATTCCTTATGG 92426 35 100.0 31 ................................... TGAAACATGAAACACATCAGAATTTTCTATA 92492 35 100.0 32 ................................... GACATAACCTTCTCCTTATAAAAGATGTCAGT 92559 35 100.0 34 ................................... AGACTTTTTCATAGAAAATCTCGGAAAAAATAAG 92628 35 97.1 32 ...............G................... TAAACATCTTCGCTTTTATTTAAATAATTTAG 92695 35 94.3 34 .................A...A............. ACCAGAGTGTTGAGGTTTTCTTAAATGTTGCTTC 92764 35 91.4 0 ................GA...A............. | ========== ====== ====== ====== =================================== ================================== ================== 8 35 97.8 33 GTACGAGTGACCCCGACTTTAGAGGGGATTGAGAC # Left flank : GCTAAATCAAATTCACCAAAAGCTAAAAAAGTTACTCAAACGACAAGATAAAGCACATTTATTTCCATTGTGTGGTAAATGTATGGGATCAAGAAAAGCCGATGGCGCAGGTGAAGTGACTTGGCCTGAGCATTTTTATTACTACTAACTCCTTAAAGTTTTTATCAGCAACCTTTTATCAGTAATCATAGTAAAAAATCGATTATTAAGCATGCCAGCTAATTTCATTGCCCTACTTACTAAAACTACCATTTTATCATTTATAGAAATACCCTAACTCACTGTTATTAGGCAATAAAAAATAAAAATCTAATTATTATGTTGTAGGCAAAAACATCACTTTGTCAGTAGCTAGGACCGCAGATGATTGTATTTAATAGGGTTTATTAGGTTTTAGAGATCTAACTTGTCAGTAGCAACTTATTTTTGGGTACGATTTTTTAGAGACCGTCATTTTTACCCCCTCCAGCCCTTGTATAGCGCGGCCTCGATCGGCTATA # Right flank : CCGTGGGGCAAAACAGTCTTCAACCTGTTTGTTGTGGTTCAATAATTCCGGACACTATTTTAGGTGGTATCATTACCACTCAATCAGAGGTGTCCGATGGCAAAAAAACGCAGAACATTTAGTAAAGAATTCAAACTTGAAGCCGCTTGTTTAGTTTTAGACCAAGGCTATTCACTTCAAGAAGCATGTCGTTCATTGGATGTTGGAGAAACGGCTTTAAGGCGCTGGGTTCAACAACTTGAACTTGAGCGAAATGGTGAAACACCTAATGCCAAAGCTTTGAAGAAGGATATTAAACTATTTAACTCCTAATGATATGATTAAAAACCATGTTGCACTGACCACTTGATATCACCACAGCTCTCTTAATGTCAGAAGAAATGAACAATATTCGTTAATAGACCAATTAAGTGAGCAAGAACCGGTAGAGGTGGTCTGCAGTGTCTTTGATGTTGCTCGTTTAAGTTTTTATGACTACAAAAACCGCCGTAACACAATTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACGAGTGACCCCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 758-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEF010000089.1 Pseudoalteromonas sp. MMG012 assembly_contig_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 757 28 100.0 32 ............................ TTGTCATTACAAACAAAAACCTTATTACTAGT 697 28 100.0 32 ............................ AGCGGGCGGTGATTTAGAAGTTCGGTCAACAA 637 28 100.0 32 ............................ AGTTAATTTTGGTGACACCAATAGAGATGACT 577 28 100.0 32 ............................ TATGGATAGCGCTTGATCCGAGTTAGTACTAG 517 28 100.0 32 ............................ CAGCGGCCATCTATGTATTGTTCAAAGTCACT 457 28 100.0 32 ............................ ACGATTCAAGACTTCAAACCGTGCAGCACATT 397 28 100.0 32 ............................ CTATACGCATGGAACCTGCAAAGGTTGGTAAA 337 28 100.0 32 ............................ AAAGAATGCAGCGCCTATTTAAATAAACAATA 277 28 100.0 32 ............................ TTTAAATTTATTAACGTTTAATTGAATACCAC 217 28 100.0 32 ............................ CAGATTTAATCGGTGAAGCCATAGAGTATTAT 157 28 100.0 32 ............................ AACAGATACTGACGAACAAGATACATAGTGAA 97 28 96.4 32 .............T.............. TAATTTAGTTTTGGCTTGGGTGTTTATTTGGT 37 28 85.7 0 .........T...............GTG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTTGTGTATCCTGAATGTAACGTGTAGGTTAATTTTGCGCGTATCAAGTTGTTTGTTTTTTGTTCATTTAATAGATGTGTGTATTAGCGTTATTGTCAGGGGAGAGCACATTTATTTTCAGACAATGTACAACGTTAACCGTTGTTTTCTCTGGCAGGGTCGGTAGGTACTCACATACTCCAAATGAATTGAATCTGATATCACTCGGCGAGAGAGTACTTCTTTTTAAAAAACCGTATCCATTATAGGTGATGTTTGAGTACCGATTTAGGTGAGATTTTAGTGATAATTTAAGGTAATAGTGCCATTAATCTTGAAATAAATTCATGAAGATGAATAGATATGAGCTGTGATTAGTTACTCTAAAACCCTTTATTTTTTGCTATTTAAAAAATAATTATAAAACAGTAGGTTATAGTTGGTCGTTTTTTATATGGTTAAAATGGCATTTTAGCCGTAACGACTTGTTGTAACTTATTTTTATGATGATAGTCTATT # Right flank : GATGAGTGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3938-2878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEF010000089.1 Pseudoalteromonas sp. MMG012 assembly_contig_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================================================================================================== ================== 3937 28 100.0 32 ............................ CAAGTCAGAAGTTTCACTGAGTGAAAATGAAT 3877 28 100.0 32 ............................ TGATGGGTTAGACTCTACGATAGTGGGTAAGT 3817 28 100.0 32 ............................ TTAAAAAGTGGCAAAAAAAGTACGGCAGTGAC 3757 28 100.0 32 ............................ ATAAGAAAAAGAAAACAATTAGGGGATGCAAG 3697 28 100.0 32 ............................ TCGCGTAACGCCTGAGCTAATAGAGTCTAAGA 3637 28 100.0 32 ............................ TTACGGGGACGGTTGGGGTGTTGAGGTAGATT 3577 28 100.0 32 ............................ TAGTATTAATTCAATTACCTTACTTACAAGGC 3517 28 100.0 32 ............................ AACGTGAAATTGAAGCACAAGCGGCTGAAACA 3457 28 100.0 32 ............................ AGTGCCAACAAGTCTTACTTGCTGCGGTTCAA 3397 28 100.0 34 ............................ CAAAGAAAGTTCACTTTTTATTAATTGGTTCTGA 3335 28 100.0 32 ............................ ATATATCAAACCCCGTAACTTATATGGAATGT 3275 28 100.0 31 ............................ CCTATAGACCCCCCATACTATGAGGACTGAT 3216 28 100.0 32 ............................ GATTGTCTTGGGTATCACCCCCGGCAACCAGA 3156 28 100.0 32 ............................ AAGCCATCCCCAAACGCCAGATTTTCCATGCT 3096 28 85.7 163 ....................A....GTG ATGAGTGGCCGAAACGCTTTCGTTTCATAGAAGGTGCAGCACTTCGATGTGAGGTCATACACACCCCCGTCTTCCTGACGTAGGTCAGGATCCACAATATCGAATATGTTTCAACATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGTGAGTTTATCC 2905 28 78.6 0 G.........G.A............GCG | ========== ====== ====== ====== ============================ =================================================================================================================================================================== ================== 16 28 97.8 41 CTTCACTGCCACGCAGGCAGCTTAGAAA # Left flank : CCAGATGAGGTCAGTTATGTGAGTTTTACGCGAAAAAATGTTAAAAGCCCTGAGCGTATTGAACGTGAAATGGCAGAAAAAGCTCAGCGGTGGTCTCAAAAAAGCGATAAGCCATTAGAGGAATGCCTAGCTGAACTTGAGCAGACAAAACCTGAGTTAAATATCAAGCACCCCTTTATCTTTCTGCATAGCCAACAGACCAAAGCGAAAGCACCAGATAAAAACAGTAAGTACCCACTATTTGTTACTATGCAAGAACGCGAGAATGATACAAATGGCACATTTGATTGTTATGGGTTGAGCGCAAAGGTAAATGATGAAAACTCGGCTGGGTGCGTGCCTCAGTTCTAATAAAATAAAGGGCTTTTTACCCTTTATTTTTGCTCTTTAAAAATTGGCAGTAAAAACAATAAGTTGTGACGTGCTGTTTTTAACAAGGTAAAAATAGGTTTTTTACCTTAATAGTCTGTTGCAACTTATCTTTTTTCATTTATTCTATA # Right flank : ATGAGTGACCGAAACGTAGTTTCAAAGCACTTCGATGTGAGGTCATGGATGACCGATGTGACCCAGCTCCATGGATGGATTGTTTACGCTTAAGTCGCAACTTCATGGACCCTGAAACCAGTTCAGGGCGACGAAGGTGGGGGAAAGGCGACGAAGTTGGGTGATTCGATCACAGGCAGCTTAGAGATTTCGCGTATGTCTCAATCACCCGTTCTTGTGTTCACTGCCGCACTGTCGGTTTAGGCAGCTTAGTCGATGAGTGACCGAAACGTTTTCGTTTGATAGGTGGCGCAGCACTTTGATATGAGGTCATACACACCCCGTCTTCCTGACGCAGGTCAGGATCCACAATATCGTATATGTTTCAACATGGATCCTGAAACCAGTTCAGGGCGACGAAGGTGGGGGTAGGGCGATGAAGCGGTTGAGTCGACGTATTTATTACGCATTTAAAGAGGGGGACCCACTGCTATGCACATCACCTCGGTTAAGCGTCTGAT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.81, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //