Array 1 36678-33521 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHG01000006.1 Moraxella catarrhalis strain COPD_M61 NODE_6_length_90667_cov_36.7363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 36677 28 100.0 32 ............................ TATCAGTGTTGATACTTCACATTTAGCTACTA 36617 28 100.0 32 ............................ CCTGACAATGTCGGATTTATCAATGTGGTGGG 36557 28 100.0 32 ............................ TGTAAATCAAGCTCAATTTCATGATTGCCTAA 36497 28 100.0 32 ............................ AGTCAGCACCGCTTTGATGATTGATAAGATAG 36437 28 100.0 32 ............................ TAGATCTGAGCCATTAAATTTCATAATGAGCT 36377 28 100.0 32 ............................ TTACTGTATTCACTCTTGGGTGCATTAGTTAT 36317 28 100.0 32 ............................ GTTCAACACCAACCGAGAAGCCTACAATGAAC 36257 28 100.0 32 ............................ AGCTTGATTAAGTCCCATTTGTCATCGAGCAT 36197 28 100.0 32 ............................ ATCTAATGCAGACTGCGGCAAATTTGGCGTGC 36137 28 100.0 33 ............................ CTAGAATAAATGCACCTATTGCCATTCTCTTTA 36076 28 100.0 33 ............................ CTGTGCAAGTGCTGTGGTAAAATTTGCGTCGAC 36015 28 100.0 32 ............................ AAAAGGATCGGGCTATGATCTCTTAGGTGCTT 35955 28 100.0 32 ............................ TAAGCTATGCAGGCGGTCAAGCATATGACAGC 35895 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 35835 28 100.0 32 ............................ TGGTGATGTGCTATATGCTAAGTATGTTTGAT 35775 28 100.0 32 ............................ ATTTGCCATCAGAACCTTTGACGGCGTTCATA 35715 28 100.0 32 ............................ CAGCGGCTCTATGGAGCGATGTACACTAATAA 35655 28 100.0 35 ............................ CCAGTCGCTCAGTAGCGAGTTAAGTTTCAGTTTCA 35592 28 100.0 32 ............................ TCTTATCATTTTTATGATGCAGTGACACGCTT 35532 28 100.0 33 ............................ TAATCCCAAGACCTGAGCAAGTCTTAAAACTGC 35471 28 100.0 32 ............................ AATCTGTCCAGTCTGATGTATTGCCCAGTTTA 35411 28 100.0 32 ............................ TTGGTTTTCATGATACGCGTCACGAAGCAATT 35351 28 100.0 33 ............................ TACTATACCTGATTCTTATTCTGTGAATTATGT 35290 28 100.0 32 ............................ AACTTTTTCGTAATGCAAATTAAGCAGTTCTG 35230 28 100.0 32 ............................ ATACGCATCAAGCAAGTGACATCGCTGATCTG 35170 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 35110 28 100.0 32 ............................ TTGGTGCAACATTAGAGATGACCACTTTTGTC 35050 28 100.0 32 ............................ TAGAGGGTTCGTAGTCTTCCACTGAAATAGTC 34990 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 34930 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 34870 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 34810 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 34750 28 100.0 32 ............................ GACGATTACACGGCTTGAAGTATTTAGCCGAT 34690 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 34630 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 34570 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 34510 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 34450 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 34389 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 34329 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 34268 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 34208 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 34148 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 34087 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 34027 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 33967 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 33907 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 33848 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 33788 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 33728 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 33668 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 33608 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 33548 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ =================================== ================== 53 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 40-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHG01000086.1 Moraxella catarrhalis strain COPD_M61 NODE_91_length_226_cov_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40 28 100.0 32 ............................ ATCTCATGCAGACTGCGGCAAATTTGGCGTGC 100 28 100.0 32 ............................ TGGTGATGTGCTATATGCTAAGTATGTTTGAT 160 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TTAGAAAAGCTTGATTAAGTCCCATTTGTCATCGAGCATC # Right flank : ATTTGCCATCAGAACCTTTGACGGCGTTCATACTTCACG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //