Array 1 50-406 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADAD01000059.1 Pseudoleptotrichia goodfellowii F0264 contig00017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 50 30 100.0 36 .............................. AATATATAAATACTTATAATAAGTATTTAATTAATA 116 30 100.0 36 .............................. ATATAATAATTTATCTTTTCATTTCGTATCTGTTCT 182 30 100.0 34 .............................. TTATTTCATTTTTCACAAATAGAAAAATAATCAA 246 30 100.0 35 .............................. GCGGAAGCCGAATAGTTGAGAAACTGGAGCAAAAG 311 30 100.0 36 .............................. GTTGAACCTGAAAGCAAATATTAATTAGGAGGAAAA 377 30 86.7 0 ...............A.A.A......G... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 97.8 36 GTTATTAATCGAGCATACTGTAATGTAAAT # Left flank : CTGTAATGTAAATAATTCTGTGATGTTAATAACAACAAATTGATTTCCGG # Right flank : TTTCTTTGTTTGTCAGTCATGACTGACAAATAAATGAGTAATAAATATTATAACTAAAATATATCAGAAAAGAGAGTTTTTGAATAAAATTATGATTCGGAACTCTTTTTTATTTACAACTATAACCGAAATATATATTATATATAAATAATTTATAAAAAAGAGAGGCAAAAATAATATTCAAAACTATTGCATTATAATTATAAAAATGTTATTATTTTTTAACATAAGATAAAAAATGTATATAATTAAAAATGTAGGACAGTAGGAGGGTAAAAATGAAAAAAATGTTATTATTACTGGGAGTAATCACAGTATTTATTTTAAGTTGCGTAGGAAAAGAAGGACAGTCATCAGGTAAAAAGGAGGAAAGTAAGAAAAAAGTAAAAATCGGAATAACGCAGATTACAACTCATCCGGCATTGGACAGTGCAAGAGAAGGTTTTAAAGAAGCATTTAAAGAAGCCGGTTTAGAAGTAGTTTATGATGAAAAAAATGCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAATCGAGCATACTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 175-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADAD01000170.1 Pseudoleptotrichia goodfellowii F0264 contig00028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 174 30 100.0 36 .............................. TAAGTACGCATTATATCAACAAGTTGCAATCTTGTA 108 30 100.0 36 .............................. GTTGTAAAAAATATATTGAGTATTGTTAATGTTTTT 42 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTTTAATAGAGCATTGTGTAATGTAAAT # Left flank : TAAGGAATTGAAAGATGATATTAAATCTCAAT # Right flank : TCCGATCAGGAAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATAGAGCATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 221-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADAD01000157.1 Pseudoleptotrichia goodfellowii F0264 contig00068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 220 25 100.0 41 ......................... AAATACAAAGGGATATTTCCATGTTGTAAACGGATTAAATG 154 25 100.0 40 ......................... AAATTTATGAAGATCAGCTTGAAGTAATTTTGACTTTGGA 89 25 100.0 39 ......................... AAATTTGTCAAGTTTTCTCATTGATTAATAACTTTTCAG 25 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 4 25 100.0 40 TTATTAATCGAGCATACTGTAATGT # Left flank : CAATCATAGATGCTATGTTTATAGCAAATGTAGGA # Right flank : T # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTATTAATCGAGCATACTGTAATGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //