Array 1 1254356-1253168 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044293.1 Escherichia coli strain P276M chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1254355 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 1254294 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 1254233 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 1254172 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 1254111 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 1254050 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 1253989 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 1253928 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 1253867 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 1253806 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 1253745 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 1253684 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 1253623 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 1253562 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 1253501 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 1253440 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 1253379 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 1253318 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1253257 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1253196 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1280404-1279887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044293.1 Escherichia coli strain P276M chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1280403 29 75.9 32 AGAG.ATT..................... CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 1280342 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 1280281 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1280220 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 1280159 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1280098 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1280037 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1279976 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1279915 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGTACTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTAATCAATGGATTAAGTGCTCTTTAACATAATGTGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTACAC # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACGTAAAAATCAAATTTAATCAAAGTGTTATCGGTAATGATTCAAATCGTTAAGAAATTTTAATCTATTATTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTGAATAACAGTATATTTTGCTTGTTATTCATTGGTTAAGTAATAAATCTGAAGTTTGTCTTTGTTTTGGAGGCTAATGAGTATACAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //