Array 1 471571-472819 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOM01000061.1 Escherichia coli strain KG-9 NODE_2_length_601137_cov_8.36122_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 471571 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 471632 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 471693 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 471754 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 471815 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 471876 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 471937 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 471998 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 472059 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 472120 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 472181 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 472242 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 472303 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 472364 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 472425 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 472486 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 472547 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 472608 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 472669 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 472730 29 93.1 32 .A........T.................. GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 472791 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 498519-500194 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOM01000061.1 Escherichia coli strain KG-9 NODE_2_length_601137_cov_8.36122_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 498519 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 498580 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 498641 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 498702 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 498763 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 498824 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 498885 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 498946 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 499007 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 499068 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 499129 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 499190 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 499251 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 499312 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 499373 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 499434 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 499495 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 499556 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 499617 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 499678 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 499739 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 499800 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 499861 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 499922 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 499983 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 500044 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 500105 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 500166 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //