Array 1 2071249-2072138 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMGR01000002.1 Staphylococcus aureus strain AR_0476 AR_476.contig.1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2071249 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 2071321 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 2071393 36 100.0 34 .................................... TTTTTTCCACCCTTTCAGATCATCTATGATCTTG 2071463 36 100.0 34 .................................... AATTTTCTAATTCTATAAGTTCATTAATTCCGAT 2071533 36 100.0 36 .................................... TATACTATTTACATAATTTTTTATGTGTCTGTCTAC 2071605 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 2071678 36 100.0 35 .................................... ATAAACCCGTTCAATTCGTTATCTTTAAATTCTTG 2071749 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 2071821 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 2071893 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 2071964 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 2072033 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 2072104 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ===================================== ================== 13 36 98.9 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 2080863-2081184 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMGR01000002.1 Staphylococcus aureus strain AR_0476 AR_476.contig.1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2080863 36 100.0 35 .................................... CTTCTAAGACGCGATATGATTCTAATTGGTCTTCA 2080934 36 100.0 38 .................................... GATATACTCCTTTACCATGTATTAATTCTGGACCACTA C [2080949] 2081009 36 100.0 33 .................................... CATATTCGATCGTGTATATCAAAACTTTATGCA 2081078 36 91.7 37 ................................G.TC TCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAA 2081151 34 66.7 0 A.......T--..T.......T..A.A.AA..T.T. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 91.7 36 TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Left flank : GAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAATTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTCGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAAAATATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACGGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGCGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGTAAATTTTGCCTTTGAACTATTGATTTGATAGGCTTTAAAGAGCTATCTAAA # Right flank : TAAAAATATATTTGATTTGATAAAATATTCTGCAAAAAAGAGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATTATTGAAATTAATCGACATTCAATTTCTAAATAAACAGAAACAAAAATAACTTTCATATAAATAATTTCTTTGCGATTAAGTTGGAATTAGAAATACTAAATACAAATAACAGCGAATGAAATGCATATTATTGAGGAATTGGATGTGTAGTGCAATTTCGAGAGTTACTACTTAAGAAAATAAAAAGAAGAAAACAAACAATAAGAATTAAATCTGAAGCAAGATATAAAAGCAAATATTTTTGATACAACCACATTAGTAAATACTTTATTAATTAGTATACGACTGAAAGCGAAGTAACAGCTAACAATGCTCCAGATATAGACATTAGTGTTACGAAAGAATAATATTACCATCTAGAAAATGTAATTTTTTAAAAATCTGAAGATAAAGTAGATTACTTTGTGAGTTTTCATGTTAA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGATAACTACCCCGTAGAAGAGGGGACGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //