Array 1 75547-75212 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLTJ01000009.1 Microvirgula sp. AG722 Ga0222385_109, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 75546 29 100.0 32 ............................. GATTGCCAGTTGCTTCGACGCCAGAACAGCGC 75485 29 100.0 32 ............................. CCAAGTACACAGTCCCCGCCGGTTCTTGCATC 75424 29 100.0 32 ............................. AATGCCGATGCGCTGTCGTTCGACGAGCATAT 75363 29 100.0 32 ............................. TCGATGAACCGGTTCTCGGCGCCGATGCGCTG 75302 29 100.0 33 ............................. CACCGTACGCGGGACGCGTTCCGCGAACTGCTG 75240 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : TGCCAGAGAAGATTACTGATCCTAATATATATGCTAAACATGCTTCAATAGATAAATATTTTTCTGTCGGTTTAATAAACCGCATGGTTGCGCATATTCCCATTAAAATGGCACTAGCAGAAACTGGCAGAGACGACTCTTTCAGAGAAAGCCAAAACATAGGCCATGAAAAATATGGCCCTGAGCTTTCGATTAATCCTGCAATTGCTAGAGCAATTGCGGAAAGAATGAATCCTGGGATTGCGAAAAGGAACGAGATCATATCTGATAGTGTTTTTATTAAAATAATTAACATACACTTTCCACGTGCCGCTGTCATCTGCATGTTGCATACCACCCGACCGTCAAGTTGACAGTCTGTGTCCCTGAGCTGGACAGCACGGGGGGCTGGAACCGGATGTGGTAGAACTGCCATGGTGTAGCCACGGTTGCGGTGGCAAAAAGTTGGTAGATTTTCATGGTGCCAATAAGCTATTTTTAATCAATTGGTTATTTTTAGA # Right flank : CCCGTGAGCGGCCCGCCTCACCGCGCTTGAGAGCAGGATGCAGATGCCGCTGCTGCTCGAATGATTCGGCGGCAGATGCCTATGCAGCGTGTTCGGCGTGCTCTTCGATGGCTTCGGCTACCCACTCATTCAGGCTTTTGCCCTGAGCGGCCGCAGAAATGGCGGCGGCGGAGTGAGTGGCCGGATCAATGCGTACGTTGAACCTTCCGGAATAGGACTTGTAGGGCTCGATACCCTTTTCCGCACACATATCCAAGTAGACCCGGAGAGAGGTTTCGCCCTCGGCCTTGAGGCTGGTGACGTCAGCCGCATAAAAGTCGGCTCCACCGCTCAGCCCGATGAACTCGCCGCGGAACATCTCGATTTCGGGATCGTAGGCGATGACGGCCTTCTGGCCGTTGATGATCATGATGTTGTTCATGGCTTGACTCCGTTTTCTTCCAACCACTTGCGGACTGATGCTACGGCACCCTTGTCTGTCTCCGGTGACGGGTGGGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 90947-92074 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLTJ01000004.1 Microvirgula sp. AG722 Ga0222385_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90947 29 100.0 32 ............................. GTGTACAAGCATTGTCCGACTGATCTTCTCGC 91008 29 100.0 32 ............................. ATAAACCCCATCCTGCATGACGATCAGTTCAC 91069 29 100.0 32 ............................. GCTGGGTCATTTTCCTGACCACCCAGAGCGAC 91130 29 100.0 32 ............................. GTGCGGGAATTCGACATCGTGTCGAGTCAGAC 91191 29 96.6 33 ............................T CTTCAACGAATGACATTTTCGGCAGGCAATCGA 91253 29 100.0 32 ............................. TTCGACGTGGTCTACATCGGCACCATCCTGCA 91314 29 100.0 32 ............................. CAATCGAGATAGCTTTCCCGCTTGCCGCCGGG 91375 29 100.0 32 ............................. ACCTCGAGATCGAACACTCGTACAACGGCCCG 91436 29 100.0 32 ............................. TGATCTTGCGGAATGGGACGTGGAAAGAAAAC 91497 29 100.0 32 ............................. GCTGGTGAGTGCGTTACGCCGCTCGCCACGCG 91558 29 100.0 32 ............................. CTCACCGACGGCGGCGGACTCGCCCTCTGGGT 91619 29 100.0 32 ............................. CGCGCCTATCGTGCGACGCTGGTCGCAATCTG 91680 29 100.0 32 ............................. TTGGGAGAACCGGAACGCGGCAGCAGCGCCCT 91741 29 100.0 32 ............................. GACGACACCCACCTGCGCAGCAAGTGCCTGGA 91802 29 100.0 32 ............................. AAATCGCGCGACCGCATTGACGGCATCGTGGC 91863 29 96.6 32 ..............A.............. ACGACATCGAGCATGTCGAGCCGTTCGGTTTT 91924 29 100.0 32 ............................. TTCGTGAAAACCGGGAAAATTTCCTTCGCTGA 91985 29 100.0 32 ............................. AAAACCCTTTCCCGCGCGCAATTCAATCAGCT 92046 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 GTGTTCCCCGCGTACGCGGGGATGAACCG # Left flank : CTGGTCCAGATCGAGACCGCAGGTCATGACACCCCGGCCGACACGGCCGAGACCCCGGCCGCCGAAGCCCGCCGCCGCGCCGACGTGGCCCAGCCCGCCGCTGCCGGCGACGCTGGCCAGAACGGCCTGTCGCAGGTCGAGACGCGCCACTAAGCGGAAGTCCGTCAACCTTCTGCATGCAGGGGGTTGACGGAATCAGCAGGCTTCCGTAGAATCTCTTTTCTCGATTCCCCGATAGCTCAGTTGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGAGCCCAGGTCGGGGAGCCAGAATTCAAACGCCGTGAACGCATGTTCACGGCGTTTTCATTTGTGGGTTGCCGGGAGAAACAGGCCGGATGGCCGCCGGTGTGCGAGGCTGCTATCGTACTGGCTGCGGTGTGCATGAGCCCCCTTGCCGGGTGCTGAAAATCGGTAGATTTTTGCTGTGGCAAATAATCGTTTTTAATCAGGTGGTTATTTTTGA # Right flank : GCTTGCGGGCCTTGCCTGCATCAGCGTCAATGGGGGGTCTTCACCCAGGCGAAGAACGGCCGAACGGACCCCCGCCGGGCCTGCCTGCGATCACGCCAGCCGCTTGACCAGCAGCAGCCCGCAGCCAAATGCCTGGGCGTGGCCGAGGCTGGCGTTCTTTCCCGGGAGCGGCTGGCCCAGCATTGCCTGGGTCAGACGCTCCGGGTCCTGCACGCGCGCCATGCCCTGATAGTCGACGCTGGAGAAGCGCAGTTCCCGGCCCTTGCTGCGCAGAACGTGCTGGCAATAGCCATCGGCCTGGATCTGGTCCGGGTCGATCTGCAGGCCCCAGCTGGCAGCGCGCTTGTCCAGCCAGGCCAGCGCAGCCTGCCGGATTGCCTGCTGCAGTGACTCACCCTGCAGCCCGGCCTGTCTGGCGAGGGTCTTGGCATGCATGAGGACGTCGTGACGCTTGCCGCGCTGGTCGGGGGCGCTGGCGATGGCCACTGTCGGATTGGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100282-101348 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLTJ01000004.1 Microvirgula sp. AG722 Ga0222385_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 100282 29 96.6 32 ............................T CGTTGGCTGTCGGCCGAAGGGATGTCGCATGC 100343 29 100.0 32 ............................. ACGCTGGGCGTCCTGTACGAGTTTCCTGCCGG 100404 29 100.0 32 ............................. CCGTTTGCGCTGCGGCCGTTCGGGAACAAGCC 100465 29 100.0 32 ............................. AAGGAAACGGCTGTGAAAGTGAAAGCCAATGT 100526 29 100.0 32 ............................. CTGGTGAGGTCGACCCAGTCGGCGGACTGGCC 100587 29 100.0 32 ............................. TTGTGCTCGGTATCGGGAGCGGGGGTGCTCGC 100648 29 100.0 32 ............................. CAGGTCGGCCGGATTGGCTGCTGTCCGGGCAT 100709 29 100.0 33 ............................. TACAAGGCGTATTACCCGGCCCGCAGCACGCCC 100771 29 96.6 32 ............................T CGTCCGGGCTGAGCTTCCGCCCGCCGCTGCCG 100832 29 100.0 32 ............................. GCGGATTGACCGGCCAGATTCTCGCCAAGCAC 100893 29 100.0 32 ............................. TCGGAGGTGTGCAGTTCCCGGCGCGCTATCAG 100954 29 100.0 32 ............................. CACAGGCTGCCCAACTGCAGGAACAGCTGCGC 101015 29 100.0 32 ............................. CTCAGCACGGAATCGTTCGTGCGGGAGCTGAT 101076 29 100.0 32 ............................. CCCACTACAGAATCGACGACCGCCGGCGGCGC 101137 29 100.0 32 ............................. AGAGCATCACCCTGAGTGGCGTGTTGTTGCCA 101198 29 100.0 32 ............................. TATCGAGATTGAAATGGAGATTGTCGAAATAG 101259 29 100.0 32 ............................. GTTGGCGGCATTCTGACGCAGGCCAACAACTA 101320 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGGACGCGGGGATGAACCG # Left flank : ATATCGTGCAGGGCGGCAAAGAAGACCAGATGCTCCGCCAGTGCCCGGGGTTGCCAGTTCCAGCGCGCGGCGAGCACTGCCAGCCATTCGGTCTGCTGTTCCAGCAGACAGTGCATGACCGCTGCCACATCCAGCGAGTGCAGGGGCAACAGGTGCCAGGCGGCACTGTCGGCCGTGGCCGGGGAGGCCTTGCCCCAATAGCGCCAGTAGGATGCGGTAGTCTTCAAGACGATCCTGTTCGTACGGCATGGAAGTGAGCGAACAGACTATTCCGTTTGATTAATTTTTTCAAATCATCGACATGGCCATCATGATGCTGGCGATGTGACGTGGTCGAATGGCATGACCTTGTGTAGGGTATTGGTGCCTGTGAACGCTGGCGGTGGGGCCTGAAATACCGGTCATGCTGCGAGACGGAAAGCGCTGCTGCAAGCGTGCTGAAAATCGGTAGATTTTTGAGGTGTTAAATTGTCGTTTTTAATCAGTTGGTTATTTTTAGA # Right flank : GAAAAGCAGCTCATTCTTGTCCGCCTCGGCAATGTGTTCCCCGCGTGAGCGGGATGGTGTCCCATTGGACGCTCAGGCTTTGCGCACCATGCTTTTCGCATGACATACTCATTCCGTCCTGATCAATGCGCGGGAAGGCCATATGGGCGGCGGAGTCATCCAGTCATCAGGTGAAGCTTGGCATTTTGATACGCTGCCGCCGGTGTGCCGGCAGCCATCGGCAGCAGGTGGCGTGCCGAGTCTCCATATATGCGGCATTGGCCGAGGGATGACCCGATGAGCCAGCCTCTCCCCAAACTCAAGCCGATTCCGGTCAGGGAACGGCTGTCGGTGCTGTTTGTCGAGCGCTGTCAGCTGGACGTGCTGGATGGTGCATTTGTCGCCGTCGATACGACCGGGATACGGACGCATATTCCGATCGGCGGTGTTGCCTGTCTGCTGCTGGAGCCCGGGGTTCGCGTGTCGCATGCGGCCTGCAAGCTGGCTGCCGAAGTGGGTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 102916-104043 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLTJ01000004.1 Microvirgula sp. AG722 Ga0222385_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 102916 29 100.0 32 ............................. GACATTCAATAACATCACGGGAAACAACATAA 102977 29 100.0 32 ............................. ATCATGAGCCAGTACCTCAGCAAATCGGCGTT 103038 29 100.0 32 ............................. TACCTGAAATCACTAAACCCAGACTGGCCAGG 103099 29 100.0 33 ............................. AGTCTGAGCCTCTTCCGGCTTCCAGTTATATCT 103161 29 100.0 33 ............................. GAAGTGCCGCCGGCTGACTTCGTCGCCTGGTGC 103223 29 100.0 32 ............................. CCGCGACAGCAAGAACACCGTCGACACCAAAG 103284 29 100.0 32 ............................. AGAACGCGTACATGCTGTTCTCCGAGCAATTC 103345 29 100.0 32 ............................. GTACTGACCAGCACGTTGCGCTTCACTGCGAT 103406 29 100.0 32 ............................. CGTTATGCGCCGGTGCGGTCGCGGCTGGTCGC 103467 29 100.0 32 ............................. TGGACCTGATCGACAAGGACACGTTGCAGCCA 103528 29 100.0 32 ............................. CGGCGAATGAATCTGGCCGCAAACTGGCTGAG 103589 29 100.0 32 ............................. CCGCCTATCTGCGTCGCAAAGCCGCCAGCGTC 103650 29 100.0 32 ............................. TACCGCTTCGCACGCGAGCCGCACATCACCTG 103711 29 100.0 32 ............................. GCAGGGGGGCTAAAACCCGGTATCTACAATCT 103772 29 100.0 32 ............................. ACTGACGGCACGTTCCAGCAGTTTCTTGCCAA 103833 29 100.0 33 ............................. CACTGGCTGGTGGGCGGAGGCTGGGCCTACGAC 103895 29 100.0 32 ............................. CCTTCATTGGTGCCGAGGCCCTGCAAGGCGCA 103956 29 89.7 31 ............TC..............A GATATGCCGGCATTTTGGTCATGACCAAATC 104016 28 75.9 0 .........T.C.G........-...AAT | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.2 32 GTGTTCCCCGCGGACGCGGGGATGAACCG # Left flank : GAGCGGATCATCCCCGATATCGAAGAACTGCTGGCGGCGGGCGGGCTGAGCGTGCCGGTCGTGGACGGGGTGGTCGAGGTGGCGATTCCGGAAGAGAAGGGGCTTGGCGATGCTGGTCATCGTACTTGAGAATGCCCCGCCCAGACTGCGCGGCCGCATGGCCATCTGGCTGCTGGAGGTACGGGCCGGCGTCTACGTTGGCACGTACAATCGCAAGGTGCGTGAATACCTGTGGCAGCAGGTGGAAGAAGGGCTGGAGGACGGCAATGCGGTAATGGCCTGGCAAGCCGCCAATGAGGCCGGTTTTGAGTTTGTCACGCTTGGACGCAATCGACGGATGCCGGTCGAATTCGACGGTGCCAGACTGGTGTCGTTTCATCCTCCGGATGCCGGTGACGTCACAGCCTAGGGTGGTTTGACGCTGGCCTTGGGCAAGGCAAAAAGTTGGTAGATTTTCCGGGTGCAAAATAGTCTTTTGTAATCAATTGACTATTTTTAGT # Right flank : TACCCACTTCCCATGACTGCCGACCCGGTACGGAAGCGACCAGAACAAACGGGCAACCCCGTCCATTCCCTCCCGGGAATGCACCGGATTGCCCGTTCTGGCTTGACGCGACCCTCTACCGTCGTGCCAGCCCCCTGACCACGGCCACCAGCTTGTCGACCTCTTCGCAGGTGTTGTAGAACGCCAGCGACGGCCGCACCGTGGCTTCGACGCCGAAGCGGCGCAGGATCGGCTGTGCGCAATGGTGGCCGGAGCGCACGGCGATGCCTTCGCGGTTCAGCGCGTCGCCGACTTCCTCCGGTTTGTAGCCCTGCAGGACGAAGGATGCGACGCTGGTCTTGTGCTGCGCGGTGCCGATCAGGCGCAGGCCGGGGATGGCGCGCAGGCCGTGGGTCGCGTATTCGAGCAGCGCGTGCTCGTAGGCGGCGATATTGTCCAGGCCCAGCTGCTCGACGTAGTCGATGGCGGCGCCAAGGCCGACGGCGTCGGCGATGTTGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //