Array 1 8084-9754 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJW01000190.1 Xanthomonas oryzae pv. oryzae strain HaN1 scaffold189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8084 31 100.0 35 ............................... ATCTGCTCAAGGCGTCCAGCGGCCAGCTGCTCGTC 8150 31 100.0 35 ............................... CGGCTATCTTTTCCAGTGCCTCAAGCATCCTTGCA 8216 31 100.0 34 ............................... AAGTACACACCAGGTACGCCAGATGAGTTGTCAG 8281 31 100.0 37 ............................... AGCTGACCACAGGTAAGATTGTTGATCTGATCACAGT 8349 31 100.0 34 ............................... TGTCTGGTCCATCTGAAACGGGTTGAAGCCGGTC 8414 31 100.0 35 ............................... TTGGTCTTCCGGTATTCCTCGTGCAGCCAGCGTGG 8480 31 100.0 35 ............................... CCAAAGAGCCGCCCAAGCTGTATCGCCAGACGCAC 8546 31 100.0 35 ............................... TTGTCCAACACCTTGCCGTCGATCGCACGCAGATC 8612 31 100.0 34 ............................... AATCAGCGCGCTGTCGGTACGGCCCGAGCCAATC 8677 31 100.0 33 ............................... CCCCGTTGGGTGTATGCAAACAAGATCAAGCTC 8741 31 100.0 35 ............................... AAGACTTTTTGGTACAGGTGCAGGGCGGCCAAAAC 8807 31 100.0 35 ............................... CACTGGCGACTCAAGCACTTGCAGGAGAGCATGCG 8873 31 100.0 34 ............................... GTTTACTTCTGCGATTTTCGCGGTAGGAAGTATG 8938 31 100.0 35 ............................... CTCAAGATTGCAGATTATCCAGCAGAGGTGCGCCA 9004 31 100.0 35 ............................... AAGGGGTCTGCGACGCAGCAGCTCCAAACGCTGTC 9070 31 100.0 35 ............................... AGAGAGACGAGGCGGAGGCTCGGGCACGTGTGGAT 9136 31 100.0 35 ............................... TGTTCTTTACGGTATTTGTAAATTAACTCCTGCAC 9202 31 100.0 34 ............................... AAGGCACAGCAGGAACGCGCGCGCAAGACCGACC 9267 31 100.0 34 ............................... AAATCGATTGCGACCCGTCTAGCATCGTGCCATG 9332 31 100.0 33 ............................... CTCAAGCAACACCCACTGTGCTGCTACTGTGAA 9396 31 100.0 35 ............................... TGGTCTGCTGCTTCTGCCTTAATGGCAGACAGCCT 9462 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 9527 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 9593 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 9659 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 9724 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 26 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : GTTGAAAACTAGGGTCTGTTAACACATCCGAAGCCCATCAACGACCAGAACGAAGCTGAGGAAGCCAAGGAACATGACATCCAGCTTCTCGAAGCGCGTGAAAATCCGTCGGTAGCCCTTCAAGCGACGGAACAGCCTCTCCACTTCGTTGCGCCGCTTGTACATTTCCTTGTCGTACTCCCAAGGATCGACCCGATTGGACTTGGGTGGAACCACCGGCACGAAGCCAAGATCGAGCGCCAACTTGCGGGTTTCATTGTCTTCGTAAGCGCGATCCATCAGCAGATGAACCGGCCGCTCCACTGGCCCCAGGTGTTCAAGCAACGCGCGGCCTGCGGGTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 329-4043 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJW01000308.1 Xanthomonas oryzae pv. oryzae strain HaN1 scaffold307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 329 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 394 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 458 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 524 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 589 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 656 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 721 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 789 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 855 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 921 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 985 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 1050 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 1117 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 1183 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 1249 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 1317 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 1382 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 1448 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 1514 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 1579 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 1645 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 1711 31 96.8 34 .......T....................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 1776 31 100.0 35 ............................... GCCACCCCCGACGGCCATCACACCGTCAAGGGAAA 1842 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 1908 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 1975 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 2040 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 2106 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 2172 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 2236 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 2302 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 2367 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 2433 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 2498 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 2565 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 2632 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 2699 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 2765 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 2832 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 2900 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 2965 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 3030 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 3095 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 3160 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 3226 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 3292 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 3357 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 3422 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 3488 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 3554 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 3618 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 3685 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 3750 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 3816 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 3881 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 3948 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4013 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 57 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TCGATTTTGATGCGCACGATCTGGCAGGTCTGCAATTGGGCGAACATCCGGTCCAGCACACCGGACTTGGCCCAACGGTTAATGCGCGTGTACACCGTATGCCAGTTGCCAAAGCGCTCGGGCAGACCGCGCCATTTGCAGCCATGCTCTGCGACGTAAAGAAGGGCGTTGACTACCTGCAGGTTGGTCATGCTGACATTGCCGCGTTGCAAAGGTAGGCAATGCTCGATGAGTGCAAATTGTGCTGGCGTGATCTCCATGCCCAATAGTTTAATCGCTCGAGACATTAATGTTAACAGGCCCTAGCATGTCACCAAATCCCGAGCGTG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //