Array 1 44201-45206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWXW010000022.1 Chromobacterium violaceum strain M23796 cvi23796_uni_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44201 29 100.0 32 ............................. GAACAACCATGACTCAAAATAAGTTCGCGGTG 44262 29 100.0 32 ............................. CGTCAAAAGCAAGAATTGAAAGTGTAGATAAC 44323 29 100.0 32 ............................. ACTTGGTAGAATTGATGTCTGAGATCGAAAGA 44384 29 100.0 32 ............................. GCACTCGCCGTGGTGGACGCAATTGCGCTTAA 44445 29 100.0 32 ............................. AAGAAACAGCATTCGATGCCGATCGTGTTCGG 44506 29 100.0 32 ............................. TGATATGTGGCCGAACGATTTGCGTAAGATAC 44567 29 100.0 32 ............................. CGATCAGGTCGTAGTTTGTCTGCCCGGTGCCG 44628 29 100.0 32 ............................. CTGGAGCAGAACTCGCAGGTTTGCGTGCTGGA 44689 29 100.0 33 ............................. TGGCCGGCCAGTCGTTCGGCACGTCGACCACGG 44751 29 100.0 32 ............................. ACCCAACTGGTGGCCGCCAACTTGCTGAAGTT 44812 29 100.0 32 ............................. TACGAGCTAGACGACGAGGAACTACGCCAGCA 44873 29 100.0 32 ............................. AGCTTATCCGGCTGATCAAGATCACCGGCGAT 44934 29 100.0 32 ............................. CGCATAACGTCCGCCGCGAGCGTGGCGATGAG 44995 29 96.6 32 ..........................T.. CCGTCATGGCATCATTCAACGGCTGGCAAAAA 45056 29 96.6 32 ........T.................... CGCCTTCTGGCGCTCTTGTTTCTCAGCAATAG 45117 29 89.7 32 .........................G.TA AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 45178 29 69.0 0 A.A.........GTT..........GTGA | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.2 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGGTTTTGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACAGGCATGAAAAAAGCGGCAGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTAGGCTATGGCTGCTGGCTTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGAACCCTTGTGCAAGGGACGATTGGCCAAGGCCTGGCGGGGTTTGCCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTTAGATCGGATTTTTGTCTTTAAAAATCAGCAGCTTGAGAATGGT # Right flank : ACGGGGGACGGCTGGAGTGGTGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52482-52694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWXW010000022.1 Chromobacterium violaceum strain M23796 cvi23796_uni_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52482 29 86.2 32 ...........ATG..............A GGACCAACCGTGCCCATCTGGAACTAATCGTG 52543 29 89.7 33 ...........ATG............... TCGTCGTCAATCTCGGCGCACTGCGCGCACCAG 52605 29 100.0 32 ............................. ATCGGCAGCACATACACCGGCTTGCCCGGGGT 52666 29 82.8 0 ....................A...TG.TT | ========== ====== ====== ====== ============================= ================================= ================== 4 29 89.7 33 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : TGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGTTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCTACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCCGCAAACCCGCTTTGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCTCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTTGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCGTGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGAGTGGGTTTTTGTCTTTAAAAAAATCAGCATCTTAAAATTGGT # Right flank : TCTGCCCGTCTATCGCTTGCTTAATCCACGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTCGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTCGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTTAGCGGAGCCGTTGGTTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGG # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //