Array 1 870856-865655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013677.1 Xanthomonas oryzae pv. oryzae strain PXO524 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 870855 31 100.0 34 ............................... CCGAGTGCCCTCACAATGGTGAGAGTTTGATCCG 870790 31 100.0 35 ............................... GCATTTTACTCGACGTACATTATGTCGGCGGAGCG 870724 31 100.0 34 ............................... AAGGCTACCGGCCAGCTGTCTGGCACGCCAAATG 870659 31 100.0 32 ............................... GACTTGGCTGCGCAAATCTACGACCAATGGGA 870596 31 100.0 35 ............................... ACTGATGTGGATAGTCAGGCTGGCGGCGCCTTACA 870530 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 870463 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 870398 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 870332 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 870268 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 870204 31 100.0 35 ............................... TGGATGTTCGTAGAGTACCCCGAACCGACGCTTAT 870138 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 870073 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 870009 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 869944 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 869880 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 869816 31 100.0 34 ............................... TTTCCAAAGACCCATAGAGTTCAGGTGTGCCGCT 869751 31 100.0 35 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGCA 869685 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 869620 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 869556 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 869489 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 869425 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 869358 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 869293 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 869227 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 869162 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 869098 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 869032 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 868967 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 868902 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 868835 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 868767 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 868702 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 868637 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 868571 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 868506 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 868439 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 868372 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 868307 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 868240 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 868175 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 868110 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 868045 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 867979 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 867914 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 867850 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 867785 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 867720 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 867654 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 867588 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 867521 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 867456 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 867390 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 867324 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 867259 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 867194 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 867127 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 867061 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 866996 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 866930 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 866864 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 866797 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 866731 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 866667 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 866602 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 866537 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 866471 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 866405 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 866340 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 866275 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 866209 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 866143 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 866079 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 866012 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 865947 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 865882 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 865815 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 865750 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 865685 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 80 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //