Array 1 111295-114233 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIHN01000005.1 Streptococcus suis strain LSS65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 111295 36 100.0 30 .................................... TATTTGTATTCGAGACCGTGCAAGACCTCA 111361 36 100.0 30 .................................... ATGGTATAGGACGATCCTGTCGGGTATACC 111427 36 100.0 30 .................................... CGCCTCACGCTTTGTGATTTCCTCTGTCTT 111493 36 100.0 30 .................................... TTCGGCTCTAACCCTCCGCCTTGCATGGTT 111559 36 100.0 30 .................................... ACGCTCTAAACAACGTGAGCGAAACGTGCT 111625 36 100.0 30 .................................... AATCTGTTTCATACAACCAAATACAACTTC 111691 36 100.0 30 .................................... TCCCTGTCCAAGAAATCGGACAAGACCTGA 111757 36 100.0 30 .................................... TCTGTTTGGAGTATGGATTTACGACTAAAC 111823 36 100.0 30 .................................... TTGTGAAACAGCTTAGAGAACAGACTTTTG 111889 36 100.0 30 .................................... GATGTAGCAGCAGCCAATGCACTTGATAAT 111955 36 100.0 30 .................................... TTTTAAGACCTTTAATGTTTTCTAGCGCAT 112021 36 100.0 30 .................................... CTTGTCAAAAGCAGACATTATCCGTATCAT 112087 36 100.0 30 .................................... AATTTTACAATATCAACATCAACAGGTATT 112153 36 100.0 30 .................................... GAAAGACTTGTAGGTTGTTATGACAAGACA 112219 36 100.0 30 .................................... TGTAACACAAGTGCTTGTAATAGGTCTTTG 112285 36 100.0 30 .................................... TATACTTGTGTAAGGCTGACAATACAGGTA 112351 36 100.0 30 .................................... AAGTCTATAACCATTGAATAATTGAGTATA 112417 36 100.0 30 .................................... ACAACTGTATTATATGATATGTTCAAATTA 112483 36 100.0 30 .................................... TTACTGACAAGTATTGTAGATATGCAAGAA 112549 36 100.0 30 .................................... TTCAAGTAATGTCACGTATTCGTGAGCATT 112615 36 100.0 30 .................................... TGGCTGAGCTTAGCAAGCTACTTGGAAAGC 112681 36 100.0 30 .................................... TGCGGCCATACGTTGACGGCGACAAAATCC 112747 36 100.0 30 .................................... TTACAATACTATAGGAGACTTATGGGATGC 112813 36 100.0 30 .................................... AAGTTTGAATTTGTTTTACCAAGGAACACA 112879 36 100.0 30 .................................... TCAGCTACAGAGACACCTCTCAGACCTCTT 112945 36 100.0 30 .................................... ACCGTGAAGCTCCAAATGGTGTTTGGGGCG 113011 36 100.0 30 .................................... CGTTAAATGAAATCAAAGGTGACTCAAAAG 113077 36 100.0 30 .................................... ATGAGATATCTTATCCCACGCTCTAAACTT 113143 36 100.0 30 .................................... AATATTTAAATCTATGTTTACCTCATTTTG 113209 36 100.0 30 .................................... GGTATTACGGCAAGGACCATGAGCGGTACT 113275 36 100.0 30 .................................... TTGACATAAGCTGCAAGGTTGGTCTGTATG 113341 36 100.0 30 .................................... GACTTCTTAGCTGTCCACACTGATGTAATT 113407 36 100.0 30 .................................... TATACAAATATATTATGATTCCAAGGAAAT 113473 36 100.0 30 .................................... TCGTTGATAATCTCACCCAGCTCTCGGCCC 113539 36 100.0 30 .................................... AATGAATTTTGCTTTTAGTGAATTAGAGGG 113605 36 100.0 30 .................................... AATTATCAGAAAAATAATTGTCACGCTCTA 113671 36 100.0 30 .................................... GGTATTTTATGTATAAATGACAGGTGGTTC 113737 36 100.0 29 .................................... CTAACCTTGTCTTTGAGATTGCTGATAAT 113802 36 100.0 30 .................................... CTAAGGTAGAATACATTGACGGTTCTGTTA 113868 36 100.0 30 .................................... AACTGCGATCAGACCAAGCCACTTCTGCCA 113934 36 100.0 30 .................................... TTCAATATTAAGTAACGCTGAAAATACCTC 114000 36 100.0 30 .................................... TATTGTTTAGGGCTTTAATGCAGTCTTCTA 114066 36 100.0 30 .................................... GGCTACCCACACAATAAATGCTGTCAGAAA 114132 36 100.0 30 .................................... TAGAGCAGACTGAGCTACTTTCAACTGCTC 114198 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 45 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CCGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //