Array 1 62522-60094 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHE01000001.1 Moraxella catarrhalis strain COPD_M67 NODE_1_length_347047_cov_22.5679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 62521 28 100.0 32 ............................ AGCGTCTCACACTGCCTTGTTTACCTTGTATA 62461 28 100.0 32 ............................ ATTAAATAGCTGAGCCATGACTTCATCTACAG 62401 28 100.0 32 ............................ GTCGTTGGACGCTTGCCCACCCCAAAATACAT 62341 28 100.0 32 ............................ TACTATACCTGATTCTTATTCTGTGAATTATG 62281 28 100.0 32 ............................ ATCAATGAGCCAAAGAAAATCAACATCGCTGA 62221 28 100.0 33 ............................ AAGTGATGGCGAAAACTGGACAATCATTGATGT 62160 28 100.0 32 ............................ ATCTCCGCCCATGGTGATGACCTCACTTTTTT 62100 28 100.0 32 ............................ ATTGGGCAGTAAGATACCACAGATAACATAAG 62040 28 100.0 33 ............................ ATGCGAATAAGCGGCGATAAGTCAGCTTCGCAC 61979 28 100.0 32 ............................ TAAACCCAATACGAAAAGATGCCAAATTTTAT 61919 28 100.0 32 ............................ GCCTGCATAGCTTAGGCGAGCTAGTGTACGGT 61859 28 100.0 32 ............................ TAATTGCTCCCCTAAGATTACCGAACAACGAA 61799 28 100.0 32 ............................ GTAAAAAGTCGGTAGGTAGGGCGAGTGGTGAC 61739 28 100.0 32 ............................ AGTTAAAAAAATAAGCAGTTTTAAGACTTGCT 61679 28 100.0 32 ............................ TATATAGCGATACAGCAGATTTTATTGCGATT 61619 28 100.0 32 ............................ AAAACCTTGACACGGTCAGGATTTAGCACATA 61559 28 100.0 32 ............................ AAGTTTTCAGCGATTGAGCCGAATGTCCGCCG 61499 28 100.0 32 ............................ TTTAGATGATGATGACTTTGTCAAAGAAGTGC 61439 28 100.0 32 ............................ AAGATGGTAAGATTATTAGTCTAACCAATCAA 61379 28 100.0 32 ............................ AGAATACAACTGCTTAGTGTATTACCCAAGCT 61319 28 100.0 32 ............................ AAAAGGCGGCCAATACTTTGATGCAGGAAACA 61259 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 61199 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 61139 28 100.0 32 ............................ AAGCAAGACAAAACATTTGCTTTAGGTGAGTT 61079 28 100.0 33 ............................ GGCTTTTTAAAGAATTAAACCGTTGGACGATCA 61018 28 100.0 32 ............................ AGGTGGGAAACAAAACAGGGCTTTGTGCAGTA 60958 28 100.0 32 ............................ ATATGGATATAAAGATAAGTATTCTGATAAGT 60898 28 100.0 27 ............................ GAAGATCAGATCTATTATTGAGCGAGC 60843 28 100.0 32 ............................ AAACTTCGGTCGATTTTGACACGGTTGAACGC 60783 28 100.0 32 ............................ GTGATGATGTTGAAAAATATGGCAAGTTATTT 60723 28 100.0 32 ............................ TTATGACACGCTTGGCACTGATTTTAGTGATA 60663 28 100.0 34 ............................ CTGCGAAACTCGGTCATTCGCAAGTTTTGCAAAC 60601 28 100.0 32 ............................ AAACTGCCAGAGGTGTGCACTGGCAAGCCTTT 60541 28 100.0 32 ............................ ATGACGATGCTAACAGAAGAACAAGCAGATTT 60481 28 100.0 32 ............................ TCCAAAAACTCACACAGATAAAACGTGATTAA 60421 28 100.0 32 ............................ TTAGCAAGTCTTAAAACTGCTTATTTTTTTAA 60361 28 100.0 32 ............................ AACTGCTTATGGCTGGATTATACCAGTACCAC 60301 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 60241 28 100.0 32 ............................ GCCCTCAAAACTGGTTTGCAGTAGCTGATGTG 60181 28 100.0 32 ............................ CCGGTTTGGGATTGCGAAAATGGATAGATGTT 60121 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 41 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //