Array 1 403813-404817 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUD01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3292 NODE_1_length_674769_cov_0.39848, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 403813 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 403874 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 403935 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 403996 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 404057 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 404118 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 404179 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 404241 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 404302 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 404363 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 404424 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 404485 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 404546 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 404607 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 404668 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 404729 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 404790 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 421382-422753 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUD01000001.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3292 NODE_1_length_674769_cov_0.39848, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421382 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 421443 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 421504 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 421565 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 421626 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 421687 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 421748 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 421809 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 421870 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 421931 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 421992 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 422053 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 422114 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 422175 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 422236 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 422297 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 422358 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 422419 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 422480 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 422541 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 422602 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 422663 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 422724 29 100.0 0 ............................. | A [422751] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //