Array 1 5729-2428 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUM01000020.1 Bifidobacterium pseudolongum subsp. globosum strain 2071B Contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 5728 33 100.0 34 ................................. TCAGCGGCAAGCCCGTGGTCTACGAGCCCTACGT 5661 33 100.0 34 ................................. ACGGGGTCGATGGTGCGGTTGCCGGCCGTGACGG 5594 33 100.0 34 ................................. AGCCAGATCTACGGCGGCAGCGACCACACCGACC 5527 33 100.0 35 ................................. CAGTCGATGGTCGCTCTCTGTTTTGTGTCCCACAG 5459 33 100.0 33 ................................. CGTTTTAAACCGGATACGGTGCCGCTGGTGGAA 5393 33 100.0 34 ................................. AACGTGCCCGGCACACCGATACCAAAAGCGCGTC 5326 33 100.0 33 ................................. AAGCAGGCTGAACGTTTGCAGGATGCGCGCAGC 5260 33 100.0 33 ................................. CAGCGTTGGGTCACCCACGAGGTGCTCCCGCAG 5194 33 100.0 34 ................................. ATAGTCTGCGTAGTCCATTGTGTCTCCGTTTCCG 5127 33 100.0 33 ................................. ACGTCGCACGCATACTCGCTCACCCGCAGCGGC 5061 33 100.0 33 ................................. CTCGGGCTGATAGGCGTCGCGCAGCTCACCGAA 4995 33 100.0 34 ................................. ACATAGCCGTCAATCTCCACGCTATCCTCGCGGA 4928 33 100.0 34 ................................. GATACCCATAAGCCGGACGGTGCTGTCACCAATC 4861 33 100.0 33 ................................. AACGGGATCATCACCACGGGCGGCACCGTGCGC 4795 33 100.0 33 ................................. AATTGTCCCGCGCTCTGAGAGCTAAGAGCTGTT 4729 33 100.0 32 ................................. ATCGTTGACGAGCGCGACATTGATAGCTCACC 4664 33 100.0 34 ................................. ACGGACGGAGGGCCGCAGCTGGCACGCCGTTTTT 4597 33 100.0 36 ................................. TCGCCACTATCCCGTCTACGGGCCAGATGCTGCCGG 4528 33 100.0 33 ................................. TGCGGCAGTGGGCAGTTCGACGCCGCCGACGAA 4462 33 100.0 35 ................................. AATTACGAATGAAGCGCGTTCCTCGTACGCAAAAT 4394 33 100.0 35 ................................. AACGCGTCCGCTAACCGCGCGGCTTGCTCTAACGA 4326 33 100.0 35 ................................. ACCGCGGCTACGGGTGAGCTCAAACTCGACGGAGC 4258 33 100.0 33 ................................. TCGGCCGCAGTCATGCCCAACGGATCAGCCCCG 4192 33 100.0 34 ................................. AAAGATGGGCGGCGCGTGCTCTACGACCCCATAG 4125 33 100.0 33 ................................. AACGCAATGCCCGTCGTAAAGTTCGTCGAGCGC 4059 33 100.0 33 ................................. GATGCCCGACCGACCGTCCGACTGTGCAGCCTG 3993 33 100.0 33 ................................. ATCCGGTCGGCGGCCACCGGCCCTGCATGTGTC 3927 33 100.0 34 ................................. ATGTTGAGCGCGTCACGCAGCTCCGTGCGCGCAG 3860 33 100.0 32 ................................. ACCGCACCGACGCCGCCGGTTCGGGCATGGTC 3795 33 100.0 33 ................................. AGCGAACGAACATTCTTGGGGACACGCCGTTCG 3729 33 100.0 34 ................................. ACTGCGGTTGCTGCGCTGAAGACACTGTCGAAAC 3662 33 100.0 33 ................................. GATAACGTTCATGTTCGTGTTCACGACCCTTCC 3596 33 100.0 33 ................................. CAACGGAACGTCTTGCTTGATATTGAAGCTTGA 3530 33 100.0 33 ................................. TTGGCCAGCCAGATCCACGTCATGCAGTTGAGC 3464 33 100.0 32 ................................. GTCCGGCGGGAGGAGAAAAGGCGAAGACCCGC 3399 33 100.0 35 ................................. CATACGAGGGTTTCCTCAACCTCGTCGGTGTGCGT 3331 33 100.0 34 ................................. CAGATGCCTGAGAAGAAACTGCTGATGCTGTTCC 3264 33 100.0 35 ................................. TGCGTACACAATGGTTGCCCTATGGAGAACCGGAA 3196 33 100.0 34 ................................. CCGCAGCAACACAGGGCAATATTCGTCGCAGCAT 3129 33 100.0 33 ................................. AACGTCGACGACATGAGCGACATCGTGAAGAAA 3063 33 100.0 34 ................................. CAGCTCCTCACGGGTCGAACCCTGCAAGCGTGCG 2996 33 100.0 35 ................................. AAAGCATGGTTGCCGATTGCGATGACCGCGCAGAG 2928 33 100.0 35 ................................. CAGCGACGTGCGGTCGCATGGGTTTTCTCGCTTTG 2860 33 100.0 33 ................................. CGCAACCATTGTGACGGGCTAAATATCGATCAA 2794 33 100.0 34 ................................. CGCTGGTGTTTTGAGTGCGCGATTTAACGCGATT 2727 33 100.0 33 ................................. TTTGCAGGGCCTTGACGTTCGCGCCGCTGCTCA 2661 33 100.0 33 ................................. CTTTTGTATCGAACATTTGTTTGGATCATTAGA 2595 32 97.0 36 ................-................ ACCGGCTGCGCGGGCTTCGCCTCGGCCAGCTGCCAG 2527 32 90.9 35 ..........C.....A..-............. GGGTTTGCCGGCCGGTGGGGTCGGGCGTGTGGTGT 2460 33 90.9 0 ........T...T.........C.......... | ========== ====== ====== ====== ================================= ==================================== ================== 50 33 99.6 34 GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Left flank : AACGTCGCCAAGACATGCATGCGATTCGGGCAACGGGTTCAGAATAGTGTATTCGAATGCTCGATTGTGCCAGCTGACTACTTGATGCTGGTTTCAGATTTGCTGGAGATCATCGATAGAGAGAAAGATAATCTGCGCATCTACAAACTCGGCAAGAATTATGCAAGTAAGATTGAGAGTTATGGGCGCAATCTACATATGCCATTCGATGACGTCATGATGATTTAAGCATAGACACTTATGGTTGAGGGGCGTAGTGATGCGAGGGGGATGCTGTCATGATTTCTCCGTAGGCTCGCACTGAAAGCGCTAGATCTATACCAGAGATTTCAACCGTATTGAGCGGATGTTGTTTGATAATTCAATAGTGTTTTCCACAATCCGGATTCAGTTCTGAGATATAGTAGTTAAGCATCATTCAGTATGAGTTTTCTGCGATAGAATTCAGACTGAACGTGAGCAAAGTGTCTGGAATATGGATCATTTTGTTCATTTTTGCA # Right flank : AATAGAGCTTGAACTGCTTGCAAAGATGCAGTCGAATCGCGGAAGATGATGGGCGGTTACACTGATAAGGGGAAAGGTGGTGACATGCACACGACGTTGGACTTGAGTCAATACAATGATGTGACGGCATATGCTGATGCAGTACATTGTCCGGTGGTGCATGGGGATCATCTGCCAACTCCGCAAGCTGTCGCACACCGTGTGCGTGAGGCGATGGATGAACGGCACCTGAGTATGGAGCAGGTCGCAAAGGAAGCACATGTCAGCATCCAGGCTATGTACTCGCTGCGCGATAGTGGCTTGTCGAGTCTGCGCGAGGCTCGCCGTGTGTTCGCTGTACTGGATATTCGTGTGCATGCATACCCAGTGGAAATGGTGCCATTGTCGCTATGAGTGATGTGCTGCATACATGGATGGGCGATTGACATCATGTGGGTGTAATCACTCTTGGCGGGAAAGGCGTGGCCGATTTTGAGTATGATCAGATCTCCCTGACCAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTCCCTTCGGGGAGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //