Array 1 270448-273503 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOKA01000001.1 Xanthomonas axonopodis pv. clitoriae strain LMG9045 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 270448 31 100.0 34 ............................... TCGGCGGTGACGTCCATCCATTCGCGGACCTCAT 270513 31 100.0 36 ............................... GCGCAAGACAGCGGTGTGCCGCCGCTCGGTTATGCC 270580 31 100.0 35 ............................... CTGGAGCCGCGTCCAGCGTTTACCGCCTTCGCGCC 270646 31 100.0 33 ............................... ATCCGGACGATCGACCGCCGCGTGGAGTTCGCA 270710 31 100.0 35 ............................... CACCAGGACACTGATTCGCGCCGCACTCACAAAAG 270776 31 100.0 34 ............................... GAAAGATCGCCGAGACGCCCGCTTCGCCTTCGTC 270841 31 100.0 36 ............................... GCTTGCGCGCACGGTATGGCGCGAACCTGGAGGAGG 270908 31 100.0 35 ............................... AATTGGGGGATGAAGGCCGCGAACGACTACACCGT 270974 31 100.0 34 ............................... GTGGAGGATCAAGTGATGACGCACGCCGAACTGT 271039 31 100.0 34 ............................... TGTTCCTCGCCCACGTCGTAGCTGATATACGATC 271104 31 100.0 35 ............................... ATGGTCACGCGTGCTGACGCCGAGCTTATGTGCGT 271170 31 100.0 34 ............................... TTGTGCAGTTGGTCTCGAAGCTCTGCGACTTGTC 271235 31 100.0 35 ............................... CCTGAACTGGAAAATCACGCTCAAGCACAACACCA 271301 31 100.0 34 ............................... GCTTCGTCGTCGGCCATGACGGAGGGCCGAGCAT 271366 31 100.0 35 ............................... CTGTTCGGCCGCTAACACAACCCCACATAGCCCCG 271432 31 100.0 35 ............................... AAGTCACTGCCAAGGCCATCGCAAAGGCCCAGGGG 271498 31 100.0 34 ............................... AGGAGGAAGAGGTCACAGTCTGCGAGTACTGGTA 271563 31 100.0 34 ............................... ACTGACGCTCAGATCCAGACCCTTCTGCAGGCGG 271628 31 100.0 36 ............................... ACCGGTCCGGATGGCCGCGAGCGCATCGGCGTCATG 271695 31 100.0 35 ............................... TGCCGGAGTACCGACAGGATTTCGCGGGTGATTTT 271761 31 100.0 34 ............................... TTACCAGTAGGGCGCCACGGCGCATTTCGACCGT 271826 31 100.0 35 ............................... ATCTGATTGGTGTTAATCAGCAGCACGGGCACGTC 271892 31 100.0 34 ............................... ACCGCTGACCAAGCGCAATGGCGGCAACCTGCCG 271957 31 100.0 35 ............................... ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC 272023 31 100.0 34 ............................... TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC 272088 31 100.0 34 ............................... TGCAGACGGGGGTAATGCACAACAGCGACCTACT 272153 31 100.0 35 ............................... CCGAAGTTGTTAATGGAGCCAGCCCCCTCGGTGTA 272219 31 100.0 37 ............................... CTACCAATGCAATTCCGGTTGCGTGCAGACCTGGACG 272287 31 100.0 34 ............................... TTACGCGTGTTGCAATCGATGCGCCACTGGATGC 272352 31 100.0 34 ............................... CTGCTGGCGGTGATGCGCCGCAGAGGGTTAGGGA 272417 31 100.0 35 ............................... GCCGTCTTCTTACCGCTGCGAATCAACAGGATGAT 272483 31 100.0 36 ............................... TTCACCGCGCCTGACCCGAACGCCACGATGGGTGGT 272550 31 100.0 35 ............................... AGGCGCGTCAGGCACTCCAAGGGCAGATCACCCAG 272616 31 100.0 37 ............................... TGCAATTTTTGCATTGGCGAGATGGGGCGTCTCGGCG 272684 31 100.0 34 ............................... ACCAATCAAGACTTGTCCGCGATTCGCGTGCGCA 272749 31 100.0 34 ............................... TCTACACCGAGAACCTGGAGACGGAGACCGTCAC 272814 31 100.0 34 ............................... AAGTGCGCCAGGATGCGCAGATAAACCTGCCTCC 272879 31 100.0 34 ............................... GTCATAGGCCGGCGCGTAGTGATACTGCAGTTCC 272944 31 100.0 36 ............................... GCCGCTGCCGGCTGGGGGTGGGTGGCGATGGCGCTG 273011 31 100.0 35 ............................... GATATGGGTCACGATCACACCGATCGAGCCGACGC 273077 31 100.0 34 ............................... ATGCGCACAAGCCTGATCAAGGATCGTGTAGGTC 273142 31 100.0 35 ............................... TTAATAGGGCGCGCACGGCAGGCAATACCTTGACC 273208 31 100.0 35 ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 273274 31 100.0 36 ............................... AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG 273341 31 96.8 34 .........................C..... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 273406 31 93.5 36 T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 273473 31 96.8 0 .G............................. | ========== ====== ====== ====== =============================== ===================================== ================== 47 31 99.7 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGATCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAATAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //