Array 1 10368-10701 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRUJ01000178.1 Frankia sp. KB5 contig_178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10368 29 100.0 32 ............................. CCGACCGCATCGACGCGACCAGCACGGACCTG 10429 29 100.0 32 ............................. CGGCGCGGAGCTCGGCGGCCTTGTCCTGCTGG 10490 29 100.0 32 ............................. CTGCGCGATGATCGCCCGGAACGTCGACGATT 10551 29 100.0 32 ............................. GAACTCTTCTCAAGATCCTTATTGGGAATGCG 10612 29 100.0 32 ............................. TACGAGGACTAGGGCCACGTCCTGAGCCCCCT 10673 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : GGACCTGAAACCCCGGAATGATCTTACCGATGTCGTGCAGGGCCGCCCAGAAGGCCACCAGCCTACCGGCGTCCTCCGCCGAACAGCCCAAGGCCGCCGCAACCGAAAGCCGCACCGAATCCGGGATGACCTCCCGCCACAGAACCTCAGCCATCGCCCCCGTATCCAGCAGATGCCACACCAGCGGATACGGTTCGTCCAGCCCCCGCGACTTCCCCCACAGCCACAGATCCACCCGATCCGTCGCCGCGCCATCGGCTGCGCCCGGATCCGAGCATCCCCCGAAACTCATCCAGGCAGACTAGCGTTAGCTTCCCAGCACACCCCACGGGGCAGCGCGCGCGGTCAGAGATCGGAACACCACATTCAAACAGCGATGACGATCCGATCAACCTCATCCAGCAGGCCATCATCAACGGAATAGCCCGGACGCTCTCGAGCCACCCTTCCACTCATCACAACGGACGCCGTGCCGCTTACATAAGCCCAGGTCAGCAAGT # Right flank : GCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8733-9067 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRUJ01000077.1 Frankia sp. KB5 contig_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8733 29 100.0 32 ............................. CCGGTGATGAGCGACCCGACCACGGGGATGCT 8794 29 100.0 32 ............................. ACGACCGTGTCGGCGCTCACCGCGCAGCGGAT 8855 29 96.6 32 ............................G GACGAGTCACGAGCACTAGGCGGCCCTGGGGT 8916 29 100.0 32 ............................. CCCACCATCCCGAACCCGGCCAGGGTGTGGGG 8977 29 100.0 32 ............................. GACCTGCGTCCACCCGGACGGCGTGCCCGGTG 9038 29 100.0 0 ............................. | T [9065] ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTCCGCCCCGCACGCGCGGGGATCATCCC # Left flank : ACCGTTGCGGCGGTTCGCTCTTTCCGGAGATACCTCCCCGTATTCGGCGTTACAGATCCCGTCGACCTCGGCGCCCATCAACGTCTCCGCGAACGCCTTCACCATCGAGCCCAGCAGGTCCGGACTCGCTGCCATCAGCTCCTTGCCGAACGACTCCGCGTCGGTCACAGTCGGACGCACGGCCATCGCGTTGCTCCTTCTCGAGTGCTTAGCGGTTTCTCGAAGGATCACGCGGTGGTCGCTCTACGTCACGGACCGCCGCTCCGGCGAGTCGCTAGATCGTTGCTCTTCGTACACCACGTCCGTGGACTCCACTTCGTCCAGCGTTCATGGAGTGTCCGACGGTTCTTCGTGAACGCTGAGGAAGCTTGATCATAGTGGTGCCCTGAGAGGATTCGGTGAAGCATCGGAAGATCGCAACTGCAGGTGTCCCGCTCCAGCGGCTCAGAGGACCGATGCTGTATGCGTACATCGTCGGGTAAAGTGCCAGGTCAGCAAGT # Right flank : CTCGGTGTTTCTGCGACGTGCGCTGAGCTGGCTCGGCGCGGCCGGGGTACCGGTGGTGCTGCTGTCCGCGACGTTGCCGGCCGCCGCGGCACCGTGCGGCGGCAGCACCGCGATGCGCTGGCACCCCGACCACGGCCGGTCGGTGATCCTCTACCGCGACGCAGACGCCCCCTCGGTGCACATGGCGTTCTGGGGACCAGCCTTGCTGTTTCGTTCCGGCGGCTACTGGTGGGACGGTTCCAGTTGGTACCGGCCCTGTCAGGTGTGGGACCCCGCGAGCGAGGTCTACGTGCGCCGGGTCGTGCCGGCAGCGACGATCGTCAGCGCCGCGGACCTCCTCGACGCCGACACGGATCCAGACGCTGGGGTGATGCTGGCGATCGAGGACGTTGTCCTCGACGCAGGCCGAAGCACCACCTGGCTGAACGATCTCGCCGGCTGGGCGGCGCGCCGCTCGCCTGACACCCGGTCGCTGTCGGACTGTGTGGTGCGGGTCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCACGCGCGGGGATCATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRUJ01000179.1 Frankia sp. KB5 contig_179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CGGATTCCTATCGTGACGACGTGGCAGAAAAC 62 29 96.6 32 A............................ CCGATCGGGGACATCGCGCGCGGCGCATGCCG 123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : | # Right flank : GAATGACTGCCGTGACCGAGACCAAACCAAACTCCCACATGTCCACGAAGGGAATAAGGTCAGGGAGCCAGACTCTCGAGCGCTTTGGCAGCACGGGGGTTGATCATGTTCCTGCCCATATAGGAGTCCAGCGTCATCGACGTCTTGGAGTGCCCAAGCTGGTCAGCGATCTCTCTCGCTGACAGCCCATCCTTGTCCATGGCTGTCGCGGCGGTCTTTCGCAGGTGATGGGGAACCAACCATGGGTAGCCCATGTGGTCGAACGCCTTACGAAGTTGTGTATGGGCATTGTCTGGATCCTTGAGTGTCTGCACCGAGGACATGAAGACCGGGTCATAGTCACACCTCGACTCCACACGACTGGCTTTGCGGCGCCGGAAGAGATCGACTCCCCAGCAAGGAAGGAGCAGGGTCCTCTCATGGATCTTCGATGTTGAATCGCTCTTGATCCGAAGCCCCTCGCCCTTTACCCGCACCACGACACCTCCCGTCTTTATGGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //